Wall clock time and date at job start Sat Apr 11 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00003 * 2 1 4 4 H 1.09001 * 109.47369 * 330.00696 * 3 2 1 5 5 C 1.53002 * 109.46784 * 90.00646 * 3 2 1 6 6 C 1.50698 * 109.47391 * 210.00194 * 3 2 1 7 7 O 1.21280 * 119.99969 * 354.22061 * 6 3 2 8 8 N 1.34774 * 120.00153 * 174.21633 * 6 3 2 9 9 C 1.46927 * 120.63108 * 2.99559 * 8 6 3 10 10 C 1.53188 * 108.77584 * 233.60954 * 9 8 6 11 11 C 1.53038 * 109.31488 * 305.36337 * 10 9 8 12 12 C 1.53042 * 109.53643 * 61.36418 * 11 10 9 13 13 H 1.09000 * 109.49405 * 58.62245 * 12 11 10 14 14 N 1.46499 * 109.49627 * 178.68518 * 12 11 10 15 15 C 1.45654 * 117.70353 * 240.00151 * 14 12 11 16 16 C 1.52990 * 110.77352 * 158.07757 * 15 14 12 17 17 N 1.47274 * 108.18728 * 46.72702 * 16 15 14 18 18 C 1.36929 * 121.35660 * 118.51934 * 17 16 15 19 19 H 1.08003 * 120.00174 * 332.38805 * 18 17 16 20 20 C 1.38812 * 120.00241 * 152.38901 * 18 17 16 21 21 N 1.31612 * 120.00161 * 160.40912 * 20 18 17 22 22 Si 1.86798 * 119.99710 * 340.40552 * 20 18 17 23 23 H 1.48501 * 109.47043 * 95.00750 * 22 20 18 24 24 H 1.48509 * 109.46917 * 215.00314 * 22 20 18 25 25 H 1.48498 * 109.47708 * 335.00527 * 22 20 18 26 26 C 1.47056 * 117.28793 * 298.49501 * 17 16 15 27 27 C 1.33564 * 117.64938 * 59.88865 * 14 12 11 28 28 O 1.21278 * 118.62504 * 4.34768 * 27 14 12 29 29 C 1.46926 * 120.63199 * 182.99437 * 8 6 3 30 30 H 1.09000 * 109.46772 * 299.99531 * 1 2 3 31 31 H 1.09000 * 109.47781 * 59.99539 * 1 2 3 32 32 H 1.09006 * 109.46939 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47201 * 181.95521 * 5 3 2 34 34 H 1.09009 * 109.46994 * 301.95201 * 5 3 2 35 35 H 1.08997 * 109.47315 * 61.95407 * 5 3 2 36 36 H 1.09002 * 109.58597 * 113.82236 * 9 8 6 37 37 H 1.09003 * 109.70180 * 353.47063 * 9 8 6 38 38 H 1.09004 * 109.49938 * 185.41110 * 10 9 8 39 39 H 1.09000 * 109.52783 * 65.33324 * 10 9 8 40 40 H 1.08999 * 109.45878 * 301.34982 * 11 10 9 41 41 H 1.08998 * 109.46411 * 181.38935 * 11 10 9 42 42 H 1.09001 * 109.21702 * 37.74610 * 15 14 12 43 43 H 1.09002 * 109.21508 * 278.41147 * 15 14 12 44 44 H 1.09006 * 109.72004 * 287.05471 * 16 15 14 45 45 H 1.08995 * 109.75857 * 166.42072 * 16 15 14 46 46 H 0.97003 * 120.00755 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.56358 * 162.56306 * 26 17 16 48 48 H 1.08994 * 109.56834 * 282.79549 * 26 17 16 49 49 H 1.09000 * 109.58550 * 6.60931 * 29 8 6 50 50 H 1.08995 * 109.59083 * 246.17627 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7712 1.4425 6 6 3.3386 1.2640 -0.7104 7 8 3.7963 0.2030 -1.0789 8 7 4.0179 2.4058 -0.9364 9 6 3.5084 3.6910 -0.4388 10 6 3.4298 4.6765 -1.6089 11 6 4.7976 4.7639 -2.2899 12 6 5.1836 3.3894 -2.8411 13 1 4.4247 3.0550 -3.5486 14 7 6.4785 3.4809 -3.5201 15 6 6.5280 3.1334 -4.9337 16 6 7.7443 3.7719 -5.6072 17 7 8.9199 3.5358 -4.7520 18 6 9.9951 2.8170 -5.2015 19 1 9.8597 2.0594 -5.9593 20 6 11.2594 3.0619 -4.6833 21 7 12.2068 2.1563 -4.8040 22 14 11.6159 4.6767 -3.8146 23 1 11.4378 4.5012 -2.3508 24 1 13.0134 5.0925 -4.0969 25 1 10.6803 5.7201 -4.3056 26 6 8.8921 4.1040 -3.3960 27 6 7.5297 3.8795 -2.7989 28 8 7.3810 4.0672 -1.6100 29 6 5.2820 2.3892 -1.6850 30 1 -0.3633 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.6288 2.7807 1.4428 34 1 1.2618 1.7680 1.9665 35 1 2.9103 1.0968 1.9461 36 1 4.1832 4.0813 0.3230 37 1 2.5156 3.5518 -0.0109 38 1 3.1450 5.6608 -1.2371 39 1 2.6871 4.3304 -2.3277 40 1 5.5444 5.0869 -1.5645 41 1 4.7510 5.4831 -3.1075 42 1 5.6203 3.4878 -5.4222 43 1 6.5894 2.0499 -5.0348 44 1 7.5814 4.8437 -5.7208 45 1 7.9041 3.3184 -6.5854 46 1 13.0904 2.3275 -4.4422 47 1 9.6460 3.6142 -2.7796 48 1 9.0981 5.1732 -3.4438 49 1 5.4590 1.3892 -2.0810 50 1 6.1014 2.6734 -1.0248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071257114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:12 Heat of formation + Delta-G solvation = -86.983742 kcal Electronic energy + Delta-G solvation = -31626.853969 eV Core-core repulsion = 27462.005380 eV Total energy + Delta-G solvation = -4164.848589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.13321 -41.13773 -38.95437 -38.14426 -37.88082 -36.28204 -34.24604 -33.38211 -32.75546 -31.29379 -30.60116 -28.25561 -27.76843 -26.94377 -25.67705 -24.70934 -24.24304 -23.25349 -21.84638 -20.36194 -20.25179 -18.78420 -18.53865 -18.15146 -17.81515 -17.27170 -16.99584 -16.74893 -16.43021 -16.32688 -16.11232 -15.71921 -15.45863 -15.30509 -15.10692 -14.78074 -14.63904 -14.50380 -14.24959 -14.13684 -14.03731 -13.87109 -13.44428 -13.37978 -13.15258 -12.99964 -12.80712 -12.77349 -12.56982 -12.26891 -12.19491 -12.11583 -11.86021 -11.80226 -11.74755 -11.67305 -11.04790 -10.99927 -10.64515 -10.52759 -10.02194 -9.49596 -9.08596 -8.23365 -5.60273 1.30042 1.35607 1.38546 1.44369 1.47085 1.60055 2.05817 2.35733 2.87530 2.89213 3.21849 3.36768 3.48912 3.76758 3.83146 3.86263 3.90167 3.96637 4.01663 4.09506 4.18616 4.30237 4.35701 4.40788 4.42617 4.45192 4.51658 4.55753 4.58952 4.63591 4.68268 4.77804 4.79455 4.86591 4.88939 4.92667 5.01666 5.09665 5.14407 5.19307 5.20287 5.39360 5.61662 5.73683 6.04406 6.06180 6.32636 6.39163 6.70874 7.03266 7.07707 7.47459 7.87082 8.95618 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.002885 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.026625 B = 9703.395796 C = 9946.837694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.077 3.923 4 H 0.125 0.875 5 C -0.176 4.176 6 C 0.503 3.497 7 O -0.582 6.582 8 N -0.599 5.599 9 C 0.090 3.910 10 C -0.120 4.120 11 C -0.133 4.133 12 C 0.135 3.865 13 H 0.106 0.894 14 N -0.589 5.589 15 C 0.101 3.899 16 C 0.127 3.873 17 N -0.617 5.617 18 C -0.249 4.249 19 H 0.066 0.934 20 C -0.029 4.029 21 N -0.951 5.951 22 Si 0.932 3.068 23 H -0.286 1.286 24 H -0.303 1.303 25 H -0.247 1.247 26 C 0.109 3.891 27 C 0.516 3.484 28 O -0.576 6.576 29 C 0.100 3.900 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.263 0.737 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.054 0.946 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.806 8.673 8.031 32.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.016 3.984 4 H 0.142 0.858 5 C -0.233 4.233 6 C 0.292 3.708 7 O -0.461 6.461 8 N -0.333 5.333 9 C -0.031 4.031 10 C -0.159 4.159 11 C -0.172 4.172 12 C 0.031 3.969 13 H 0.124 0.876 14 N -0.320 5.320 15 C -0.023 4.023 16 C 0.003 3.997 17 N -0.343 5.343 18 C -0.379 4.379 19 H 0.084 0.916 20 C -0.225 4.225 21 N -0.596 5.596 22 Si 0.760 3.240 23 H -0.213 1.213 24 H -0.231 1.231 25 H -0.171 1.171 26 C -0.019 4.019 27 C 0.304 3.696 28 O -0.457 6.457 29 C -0.024 4.024 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.143 0.857 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.072 0.928 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -29.365 7.984 8.410 31.571 hybrid contribution 1.400 0.103 0.248 1.425 sum -27.965 8.087 8.658 30.371 Atomic orbital electron populations 1.23115 0.78360 1.04185 1.01748 1.88028 1.22220 1.26501 1.95186 1.22028 0.91453 0.87112 0.97790 0.85806 1.22470 1.04621 1.02823 0.93376 1.21347 0.87431 0.83022 0.78992 1.90702 1.70494 1.31599 1.53342 1.48078 1.22585 1.08071 1.54530 1.22405 1.01634 0.81665 0.97386 1.21897 0.95824 1.00821 0.97317 1.21929 0.98778 0.94958 1.01506 1.21556 0.84666 0.96776 0.93870 0.87577 1.47359 1.07939 1.65185 1.11503 1.22142 1.01135 1.00087 0.78908 1.21593 0.84176 0.99438 0.94522 1.44530 1.18218 1.62718 1.08873 1.18817 0.85317 1.12188 1.21536 0.91626 1.25906 0.95697 1.00345 1.00546 1.69939 1.04500 1.34852 1.50298 0.86142 0.76781 0.82891 0.78187 1.21283 1.23120 1.17059 1.21539 0.93620 0.99286 0.87473 1.20779 0.86952 0.75523 0.86354 1.90538 1.84995 1.53986 1.16140 1.21861 0.86559 0.99149 0.94871 0.91459 0.92474 0.88924 0.88272 0.88355 0.93498 0.90745 0.85664 0.87209 0.89824 0.91733 0.90359 0.86395 0.92866 0.92150 0.88835 0.92757 0.90978 0.91223 0.92768 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.47 16 2 O -0.40 -8.94 9.89 -130.01 -1.29 -10.22 16 3 C 0.08 1.34 2.30 29.85 0.07 1.40 16 4 H 0.12 1.14 7.18 -2.39 -0.02 1.12 16 5 C -0.18 -2.16 9.09 71.98 0.65 -1.50 16 6 C 0.50 13.85 7.12 87.66 0.62 14.48 16 7 O -0.58 -23.08 15.93 15.94 0.25 -22.83 16 8 N -0.60 -14.28 2.97 -818.91 -2.43 -16.71 16 9 C 0.09 1.22 5.09 86.36 0.44 1.66 16 10 C -0.12 -1.38 6.08 30.67 0.19 -1.19 16 11 C -0.13 -2.69 5.03 30.62 0.15 -2.54 16 12 C 0.14 3.45 2.61 45.07 0.12 3.57 16 13 H 0.11 2.26 7.73 -2.39 -0.02 2.24 16 14 N -0.59 -18.44 2.79 -801.66 -2.24 -20.68 16 15 C 0.10 2.75 6.45 86.54 0.56 3.31 16 16 C 0.13 4.13 6.60 86.23 0.57 4.70 16 17 N -0.62 -27.69 2.77 -703.45 -1.95 -29.64 16 18 C -0.25 -13.65 10.11 84.03 0.85 -12.80 16 19 H 0.07 3.86 8.06 -2.91 -0.02 3.83 16 20 C -0.03 -1.69 5.25 84.86 0.45 -1.24 16 21 N -0.95 -59.51 13.97 21.65 0.30 -59.20 16 22 Si 0.93 45.75 24.30 68.60 1.67 47.42 16 23 H -0.29 -14.03 6.84 99.48 0.68 -13.35 16 24 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 25 H -0.25 -11.09 6.23 99.48 0.62 -10.47 16 26 C 0.11 4.78 4.31 85.44 0.37 5.15 16 27 C 0.52 20.09 6.98 87.76 0.61 20.71 16 28 O -0.58 -23.83 12.49 -3.02 -0.04 -23.87 16 29 C 0.10 3.12 5.65 86.36 0.49 3.61 16 30 H 0.07 0.43 7.83 -2.39 -0.02 0.42 16 31 H 0.06 0.48 8.09 -2.39 -0.02 0.46 16 32 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.10 0.81 5.29 -2.39 -0.01 0.80 16 34 H 0.10 0.68 7.83 -2.38 -0.02 0.67 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.13 0.77 4.48 -2.39 -0.01 0.76 16 38 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 1.72 6.10 -2.39 -0.01 1.70 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.12 2.12 7.94 -2.39 -0.02 2.10 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 45 H 0.09 2.91 7.96 -2.39 -0.02 2.89 16 46 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 47 H 0.07 3.62 5.60 -2.39 -0.01 3.61 16 48 H 0.07 2.94 6.10 -2.39 -0.01 2.93 16 49 H 0.05 2.06 7.02 -2.39 -0.02 2.04 16 50 H 0.07 2.72 5.65 -2.39 -0.01 2.71 16 Total: -1.00 -83.35 375.11 2.47 -80.88 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.83 Total: 14.06 kcal Atomic # 6 Polarization: 33.43 SS G_CDS: 7.36 Total: 40.80 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -6.32 Total: -126.23 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -1.07 Total: -56.92 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.67 Total: 47.42 kcal Total: -83.35 2.47 -80.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071257114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.105 kcal (2) G-P(sol) polarization free energy of solvation -83.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds