Wall clock time and date at job start Sat Apr 11 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99828 * 2 1 4 4 H 1.09005 * 109.47336 * 330.00316 * 3 2 1 5 5 C 1.53008 * 109.47159 * 89.99741 * 3 2 1 6 6 C 1.50691 * 109.47473 * 209.99644 * 3 2 1 7 7 O 1.21284 * 119.99946 * 346.70276 * 6 3 2 8 8 N 1.34773 * 120.00589 * 166.69797 * 6 3 2 9 9 C 1.46921 * 120.63554 * 184.59234 * 8 6 3 10 10 C 1.53627 * 108.54866 * 126.36546 * 9 8 6 11 11 C 1.53038 * 109.23860 * 54.85730 * 10 9 8 12 12 C 1.53040 * 109.53999 * 298.51317 * 11 10 9 13 13 H 1.08998 * 109.49791 * 301.41496 * 12 11 10 14 14 N 1.46499 * 109.52740 * 181.33349 * 12 11 10 15 15 C 1.45650 * 117.70561 * 119.88159 * 14 12 11 16 16 C 1.53183 * 110.66573 * 157.95727 * 15 14 12 17 17 N 1.47270 * 108.06357 * 47.05676 * 16 15 14 18 18 C 1.36942 * 121.34922 * 118.32194 * 17 16 15 19 19 H 1.07998 * 120.00140 * 337.02175 * 18 17 16 20 20 C 1.38811 * 120.00102 * 157.02612 * 18 17 16 21 21 N 1.31625 * 119.99768 * 343.65559 * 20 18 17 22 22 Si 1.86801 * 120.00131 * 163.65675 * 20 18 17 23 23 H 1.48499 * 109.47007 * 60.00015 * 22 20 18 24 24 H 1.48498 * 109.46997 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46886 * 299.99892 * 22 20 18 26 26 C 1.47045 * 117.29790 * 298.33532 * 17 16 15 27 27 C 1.33382 * 117.70469 * 300.14494 * 14 12 11 28 28 O 1.21280 * 118.48970 * 4.31735 * 27 14 12 29 29 C 1.46928 * 120.62746 * 4.86912 * 8 6 3 30 30 H 1.08995 * 109.47537 * 300.00070 * 1 2 3 31 31 H 1.09004 * 109.46992 * 60.00240 * 1 2 3 32 32 H 1.09009 * 109.47011 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46926 * 63.78673 * 5 3 2 34 34 H 1.08998 * 109.46947 * 183.78901 * 5 3 2 35 35 H 1.09000 * 109.46867 * 303.78798 * 5 3 2 36 36 H 1.09002 * 109.58753 * 246.20407 * 9 8 6 37 37 H 1.09000 * 109.58779 * 6.62303 * 9 8 6 38 38 H 1.08995 * 109.63371 * 294.87114 * 10 9 8 39 39 H 1.08996 * 109.43307 * 174.72418 * 10 9 8 40 40 H 1.08995 * 109.46457 * 178.49080 * 11 10 9 41 41 H 1.09007 * 109.46046 * 58.53104 * 11 10 9 42 42 H 1.09001 * 109.21651 * 278.45325 * 15 14 12 43 43 H 1.09000 * 109.21729 * 37.78514 * 15 14 12 44 44 H 1.09001 * 109.90982 * 287.34783 * 16 15 14 45 45 H 1.08999 * 109.68409 * 166.63912 * 16 15 14 46 46 H 0.96998 * 119.99846 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.56898 * 282.92454 * 26 17 16 48 48 H 1.09000 * 109.56475 * 162.56371 * 26 17 16 49 49 H 1.09000 * 109.58917 * 353.37289 * 29 8 6 50 50 H 1.09001 * 109.58582 * 113.80114 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4426 6 6 3.3386 1.2640 -0.7103 7 8 3.8612 0.1977 -0.9573 8 7 3.9460 2.4117 -1.0712 9 6 5.1904 2.3867 -1.8519 10 6 5.0005 3.2591 -3.1021 11 6 4.5538 4.6596 -2.6767 12 6 3.2129 4.5690 -1.9448 13 1 2.4708 4.1129 -2.6001 14 7 2.7701 5.9130 -1.5657 15 6 1.4983 6.3824 -2.0983 16 6 0.9274 7.5040 -1.2251 17 7 2.0078 8.4678 -0.9556 18 6 1.9213 9.7697 -1.3715 19 1 1.2737 10.0316 -2.1951 20 6 2.6661 10.7527 -0.7345 21 7 3.1965 10.5149 0.4465 22 14 2.9154 12.4132 -1.5531 23 1 1.5961 13.0549 -1.7827 24 1 3.7404 13.2798 -0.6736 25 1 3.6074 12.2250 -2.8534 26 6 3.1834 7.9754 -0.2222 27 6 3.5624 6.6231 -0.7613 28 8 4.6382 6.1572 -0.4505 29 6 3.3795 3.7115 -0.6863 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 2.9350 1.1161 1.9364 34 1 2.5980 2.7929 1.4433 35 1 1.2674 1.7372 1.9756 36 1 6.0082 2.7810 -1.2486 37 1 5.4143 1.3625 -2.1499 38 1 4.2416 2.8153 -3.7465 39 1 5.9440 3.3269 -3.6437 40 1 4.4439 5.2895 -3.5594 41 1 5.3015 5.0931 -2.0124 42 1 1.6490 6.7538 -3.1120 43 1 0.7914 5.5531 -2.1223 44 1 0.5593 7.0920 -0.2855 45 1 0.1135 8.0017 -1.7523 46 1 3.7166 11.2019 0.8917 47 1 2.9436 7.8917 0.8378 48 1 4.0141 8.6681 -0.3569 49 1 2.4081 3.5617 -0.2150 50 1 4.0526 4.2117 0.0101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071257115.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:18 Heat of formation + Delta-G solvation = -70.705750 kcal Electronic energy + Delta-G solvation = -31870.485148 eV Core-core repulsion = 27706.342425 eV Total energy + Delta-G solvation = -4164.142722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86755 -39.79236 -38.00707 -36.87817 -36.09972 -34.52253 -33.26646 -31.93253 -31.11289 -29.73775 -28.90229 -27.09357 -26.45050 -25.92308 -23.87434 -23.71573 -23.16997 -21.75048 -20.77675 -19.25168 -18.22376 -17.70155 -16.96943 -16.93298 -16.22301 -16.10550 -15.56699 -15.44901 -15.12416 -14.84316 -14.71896 -14.67266 -14.06090 -13.93516 -13.62689 -13.46176 -13.40837 -13.13620 -13.13138 -12.76759 -12.53512 -12.43444 -12.38595 -12.04157 -11.82029 -11.68449 -11.55911 -11.41483 -11.05517 -10.94043 -10.89861 -10.80783 -10.59712 -10.57801 -10.30542 -10.17625 -10.04279 -9.58989 -9.07497 -8.79245 -8.72197 -8.19623 -7.02703 -5.98872 -3.40834 2.46236 2.58375 3.24638 3.29346 3.33657 3.36607 3.37937 3.72572 4.30960 4.32727 4.54844 4.69436 4.74107 4.81384 4.95673 4.99904 5.03349 5.09381 5.10956 5.20621 5.21271 5.25957 5.33250 5.40752 5.41816 5.44750 5.52920 5.59364 5.75617 5.77009 5.81654 5.85902 5.89498 5.93027 5.95360 6.16436 6.26089 6.34532 6.46454 6.49640 6.77349 6.80260 6.97605 7.14127 7.27413 7.58743 7.98619 8.06101 8.11120 8.70874 8.97819 9.57283 10.10130 11.11043 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.003074 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.115306 B = 9107.079917 C = 9797.476693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.071 3.929 4 H 0.084 0.916 5 C -0.175 4.175 6 C 0.519 3.481 7 O -0.526 6.526 8 N -0.603 5.603 9 C 0.113 3.887 10 C -0.128 4.128 11 C -0.140 4.140 12 C 0.131 3.869 13 H 0.080 0.920 14 N -0.598 5.598 15 C 0.100 3.900 16 C 0.129 3.871 17 N -0.594 5.594 18 C -0.261 4.261 19 H 0.074 0.926 20 C 0.005 3.995 21 N -0.905 5.905 22 Si 0.909 3.091 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.282 1.282 26 C 0.165 3.835 27 C 0.504 3.496 28 O -0.566 6.566 29 C 0.087 3.913 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.032 0.968 45 H 0.076 0.924 46 H 0.259 0.741 47 H 0.063 0.937 48 H 0.117 0.883 49 H 0.081 0.919 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.660 -15.097 -3.160 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.279 6.279 3 C 0.009 3.991 4 H 0.102 0.898 5 C -0.233 4.233 6 C 0.305 3.695 7 O -0.402 6.402 8 N -0.338 5.338 9 C -0.009 4.009 10 C -0.166 4.166 11 C -0.178 4.178 12 C 0.026 3.974 13 H 0.098 0.902 14 N -0.331 5.331 15 C -0.025 4.025 16 C 0.002 3.998 17 N -0.318 5.318 18 C -0.389 4.389 19 H 0.092 0.908 20 C -0.194 4.194 21 N -0.549 5.549 22 Si 0.738 3.262 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.209 1.209 26 C 0.038 3.962 27 C 0.295 3.705 28 O -0.446 6.446 29 C -0.036 4.036 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.094 0.906 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.134 0.866 49 H 0.100 0.900 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.643 -15.895 -3.002 16.581 hybrid contribution -0.286 1.277 -0.451 1.384 sum -3.929 -14.618 -3.453 15.526 Atomic orbital electron populations 1.22893 0.80610 1.03186 1.00187 1.88034 1.19649 1.25238 1.94985 1.21933 0.93525 0.86586 0.97032 0.89786 1.22329 1.03695 1.02554 0.94707 1.20326 0.86430 0.83664 0.79048 1.90689 1.65678 1.29173 1.54615 1.47989 1.25789 1.05488 1.54569 1.21729 0.85505 1.01521 0.92139 1.21953 1.02023 0.95651 0.97006 1.22047 0.98331 0.96496 1.00971 1.21330 0.97065 0.83778 0.95243 0.90175 1.47436 1.21932 1.14543 1.49188 1.22120 0.83725 0.97844 0.98774 1.21287 0.91887 0.90047 0.96593 1.44169 1.14210 1.07252 1.66209 1.19125 1.26123 0.82427 1.11273 0.90824 1.25032 1.01033 0.98088 0.95238 1.69944 1.37820 1.34561 1.12584 0.86270 0.77997 0.83156 0.78762 1.20755 1.21453 1.20881 1.21028 0.92815 0.87513 0.94891 1.22158 0.83150 0.88677 0.76561 1.90518 1.22924 1.71244 1.59927 1.22417 1.00162 0.82855 0.98215 0.93687 0.93818 0.89147 0.91002 0.90340 0.90979 0.90966 0.89111 0.91930 0.90440 0.91811 0.88168 0.92310 0.92105 0.94958 0.90556 0.93046 0.91940 0.86571 0.90048 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.32 16 2 O -0.36 -4.53 9.92 -54.78 -0.54 -5.07 16 3 C 0.07 0.81 2.28 -27.88 -0.06 0.75 16 4 H 0.08 0.80 6.84 -51.93 -0.35 0.44 16 5 C -0.18 -1.76 9.17 37.16 0.34 -1.42 16 6 C 0.52 7.35 7.03 -10.99 -0.08 7.27 16 7 O -0.53 -9.31 15.99 -14.00 -0.22 -9.53 16 8 N -0.60 -7.81 2.97 -172.50 -0.51 -8.32 16 9 C 0.11 1.39 6.45 -3.49 -0.02 1.37 16 10 C -0.13 -1.43 6.10 -26.39 -0.16 -1.59 16 11 C -0.14 -1.91 5.02 -26.69 -0.13 -2.04 16 12 C 0.13 1.74 2.61 -67.81 -0.18 1.56 16 13 H 0.08 0.94 7.73 -51.93 -0.40 0.53 16 14 N -0.60 -9.38 2.79 -167.04 -0.47 -9.84 16 15 C 0.10 1.42 6.46 -4.41 -0.03 1.39 16 16 C 0.13 2.20 6.61 -3.53 -0.02 2.17 16 17 N -0.59 -13.27 3.02 -173.58 -0.52 -13.79 16 18 C -0.26 -6.50 9.71 -15.06 -0.15 -6.64 16 19 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 20 C 0.01 0.13 5.00 -17.43 -0.09 0.05 16 21 N -0.91 -24.59 11.06 55.49 0.61 -23.97 16 22 Si 0.91 20.47 29.58 -169.99 -5.03 15.44 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.17 3.72 5.15 -5.02 -0.03 3.70 16 27 C 0.50 9.76 6.96 -11.73 -0.08 9.68 16 28 O -0.57 -11.64 12.49 5.56 0.07 -11.57 16 29 C 0.09 1.12 4.59 -3.71 -0.02 1.10 16 30 H 0.04 0.30 7.80 -51.93 -0.41 -0.10 16 31 H 0.04 0.31 8.09 -51.93 -0.42 -0.11 16 32 H 0.09 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.78 6.00 -51.93 -0.31 0.47 16 35 H 0.07 0.60 7.80 -51.93 -0.41 0.19 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.15 7.03 -51.93 -0.37 0.78 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.65 5.79 -51.92 -0.30 1.35 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.08 1.22 7.96 -51.93 -0.41 0.81 16 46 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 47 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 48 H 0.12 3.00 6.38 -51.93 -0.33 2.67 16 49 H 0.08 0.91 4.62 -51.93 -0.24 0.67 16 50 H 0.10 1.56 5.98 -51.93 -0.31 1.25 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -30.96 382.53 -8.49 -39.44 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.03 Total: 2.80 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: 0.39 Total: 18.66 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.89 Total: -55.93 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.70 Total: -26.18 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.96 -8.49 -39.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071257115.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.261 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds