Wall clock time and date at job start Sat Apr 11 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47107 * 2 1 4 4 C 1.46760 * 124.34556 * 90.00420 * 3 2 1 5 5 C 1.54487 * 105.47111 * 162.96266 * 4 3 2 6 6 H 1.08999 * 110.96734 * 267.26026 * 5 4 3 7 7 C 1.50703 * 110.96506 * 143.53500 * 5 4 3 8 8 O 1.21275 * 120.00385 * 0.02562 * 7 5 4 9 9 N 1.34782 * 119.99348 * 180.02562 * 7 5 4 10 10 C 1.46503 * 119.99691 * 180.02562 * 9 7 5 11 11 C 1.52993 * 109.47004 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.40772 * 304.99814 * 11 10 9 13 13 C 1.54293 * 109.40755 * 185.16136 * 11 10 9 14 14 N 1.48176 * 110.69775 * 200.57372 * 13 11 10 15 15 C 1.36942 * 118.51760 * 138.77085 * 14 13 11 16 16 H 1.07998 * 119.99491 * 5.15810 * 15 14 13 17 17 C 1.38807 * 120.00237 * 185.16397 * 15 14 13 18 18 N 1.31616 * 119.99989 * 30.12439 * 17 15 14 19 19 Si 1.86796 * 119.99802 * 210.12947 * 17 15 14 20 20 H 1.48499 * 109.47390 * 94.82677 * 19 17 15 21 21 H 1.48504 * 109.47067 * 214.82371 * 19 17 15 22 22 H 1.48500 * 109.47526 * 334.82137 * 19 17 15 23 23 C 1.44463 * 122.97032 * 318.74656 * 14 13 11 24 24 C 1.54877 * 109.32735 * 88.95908 * 23 14 13 25 25 C 1.47684 * 109.67793 * 290.10232 * 24 23 14 26 26 O 1.40530 * 109.34291 * 64.79827 * 11 10 9 27 27 C 1.54625 * 101.76143 * 25.41708 * 5 4 3 28 28 C 1.34421 * 124.34861 * 269.98286 * 3 2 1 29 29 O 1.21276 * 124.94559 * 0.42249 * 28 3 2 30 30 H 1.09008 * 109.46680 * 299.99331 * 1 2 3 31 31 H 1.08996 * 109.47559 * 59.99352 * 1 2 3 32 32 H 1.09003 * 109.46835 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46680 * 240.00669 * 2 1 3 34 34 H 1.08996 * 109.47559 * 120.00648 * 2 1 3 35 35 H 1.09002 * 110.24903 * 43.96529 * 4 3 2 36 36 H 1.08995 * 110.24957 * 281.95913 * 4 3 2 37 37 H 0.97003 * 120.00023 * 359.97438 * 9 7 5 38 38 H 1.08999 * 109.47110 * 59.99440 * 10 9 7 39 39 H 1.09000 * 109.46848 * 299.99953 * 10 9 7 40 40 H 1.09002 * 109.22936 * 320.88695 * 13 11 10 41 41 H 1.08997 * 109.23727 * 80.25530 * 13 11 10 42 42 H 0.97006 * 119.99737 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.49289 * 208.90974 * 23 14 13 44 44 H 1.08992 * 109.49579 * 329.00573 * 23 14 13 45 45 H 1.09007 * 109.43213 * 50.16415 * 24 23 14 46 46 H 1.08997 * 109.43970 * 170.03483 * 24 23 14 47 47 H 1.09005 * 108.64417 * 181.87912 * 25 24 23 48 48 H 1.08992 * 108.64717 * 299.85507 * 25 24 23 49 49 H 1.08999 * 110.48894 * 93.88474 * 27 5 4 50 50 H 1.09005 * 110.48047 * 216.51960 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1618 1.2117 5 6 3.1750 3.3438 0.7488 6 1 4.2336 3.1029 0.8456 7 6 2.8382 4.5986 1.5124 8 8 1.9720 4.5780 2.3610 9 7 3.4997 5.7437 1.2523 10 6 3.1727 6.9634 1.9950 11 6 4.0618 8.1099 1.5094 12 1 5.1084 7.8170 1.5928 13 6 3.8083 9.3590 2.3791 14 7 4.2461 10.5861 1.6733 15 6 3.4568 11.7024 1.7519 16 1 2.5823 11.7017 2.3856 17 6 3.7806 12.8346 1.0171 18 7 4.4071 12.7150 -0.1342 19 14 3.3272 14.5280 1.6622 20 1 4.4822 15.1033 2.3972 21 1 2.9746 15.4135 0.5234 22 1 2.1645 14.4136 2.5788 23 6 5.4683 10.6584 0.9065 24 6 5.1830 10.2300 -0.5542 25 6 4.9005 8.7813 -0.6015 26 8 3.7622 8.3945 0.1662 27 6 2.7701 3.4751 -0.7377 28 6 2.2715 2.0962 -1.1098 29 8 2.1220 1.6943 -2.2442 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.8322 1.5529 1.9384 36 1 1.3639 2.5310 1.6428 37 1 4.1928 5.7600 0.5738 38 1 3.3419 6.7974 3.0589 39 1 2.1265 7.2202 1.8293 40 1 2.7435 9.4325 2.6001 41 1 4.3624 9.2648 3.3130 42 1 4.6337 13.5063 -0.6476 43 1 5.8454 11.6811 0.9186 44 1 6.2114 9.9910 1.3427 45 1 4.3210 10.7802 -0.9317 46 1 6.0526 10.4504 -1.1733 47 1 4.7354 8.4921 -1.6394 48 1 5.7709 8.2440 -0.2251 49 1 1.9755 4.2122 -0.8530 50 1 3.6336 3.7455 -1.3457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073629969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:22 Heat of formation + Delta-G solvation = -97.741900 kcal Electronic energy + Delta-G solvation = -30430.405998 eV Core-core repulsion = 26265.090900 eV Total energy + Delta-G solvation = -4165.315098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -41.88892 -40.65475 -39.95471 -37.47744 -37.01473 -35.87428 -34.93970 -33.64702 -33.02521 -31.04608 -30.07928 -28.76118 -27.16703 -27.07565 -25.02997 -24.07781 -23.32122 -22.34035 -21.63332 -20.93778 -20.39609 -18.77317 -18.49157 -17.93062 -17.67044 -17.29620 -17.01929 -16.60843 -16.31363 -16.19670 -15.92248 -15.59795 -15.34352 -14.96255 -14.79223 -14.54578 -14.47862 -14.38171 -14.23264 -14.06062 -13.77126 -13.51756 -13.37983 -13.22774 -13.14932 -12.93958 -12.69001 -12.50869 -12.37949 -12.32428 -12.06950 -12.00846 -11.87230 -11.76064 -11.36435 -11.21466 -11.06531 -10.80024 -10.38476 -10.16719 -10.09236 -9.78306 -8.78674 -7.78009 -5.05359 1.45389 1.47128 1.51578 1.56861 1.57862 1.86913 2.20762 2.56131 2.97355 3.18323 3.25297 3.34738 3.61120 3.75372 3.88051 4.08852 4.10719 4.13642 4.20146 4.24468 4.32042 4.40576 4.46490 4.54833 4.58807 4.62229 4.65346 4.74521 4.75893 4.80415 4.84866 4.87697 4.92599 4.94624 5.07157 5.12254 5.24360 5.26693 5.39754 5.47346 5.54598 5.64732 5.78841 6.03165 6.26320 6.36302 6.53430 6.66752 7.06006 7.21152 7.27191 8.00172 8.30488 9.19518 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024771 B = 0.002181 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.090725 B =12836.733577 C =13249.532808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.615 5.615 4 C 0.116 3.884 5 C -0.108 4.108 6 H 0.156 0.844 7 C 0.526 3.474 8 O -0.575 6.575 9 N -0.707 5.707 10 C 0.133 3.867 11 C 0.075 3.925 12 H 0.078 0.922 13 C 0.123 3.877 14 N -0.606 5.606 15 C -0.262 4.262 16 H 0.066 0.934 17 C -0.047 4.047 18 N -0.905 5.905 19 Si 0.944 3.056 20 H -0.291 1.291 21 H -0.301 1.301 22 H -0.278 1.278 23 C 0.183 3.817 24 C -0.151 4.151 25 C 0.074 3.926 26 O -0.378 6.378 27 C -0.140 4.140 28 C 0.512 3.488 29 O -0.577 6.577 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.415 0.585 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.244 0.756 43 H 0.044 0.956 44 H 0.027 0.973 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.080 0.920 48 H 0.059 0.941 49 H 0.100 0.900 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 -24.849 3.040 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.348 5.348 4 C -0.006 4.006 5 C -0.130 4.130 6 H 0.173 0.827 7 C 0.313 3.687 8 O -0.455 6.455 9 N -0.358 5.358 10 C 0.009 3.991 11 C 0.014 3.986 12 H 0.096 0.904 13 C -0.003 4.003 14 N -0.329 5.329 15 C -0.392 4.392 16 H 0.084 0.916 17 C -0.242 4.242 18 N -0.552 5.552 19 Si 0.775 3.225 20 H -0.218 1.218 21 H -0.229 1.229 22 H -0.203 1.203 23 C 0.057 3.943 24 C -0.191 4.191 25 C -0.002 4.002 26 O -0.296 6.296 27 C -0.180 4.180 28 C 0.300 3.700 29 O -0.458 6.458 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.251 0.749 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.077 0.923 49 H 0.118 0.882 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.670 -25.068 2.918 25.293 hybrid contribution -0.088 1.722 -0.281 1.747 sum 1.582 -23.346 2.636 23.548 Atomic orbital electron populations 1.22142 0.95773 1.03293 1.01383 1.21558 0.94478 0.80190 1.04265 1.48523 1.64750 1.14484 1.07071 1.22080 1.00355 0.91459 0.86730 1.22222 1.04694 0.92294 0.93766 0.82664 1.20452 0.80659 0.84955 0.82656 1.90720 1.33347 1.85880 1.35536 1.45785 1.40326 1.08542 1.41117 1.21349 0.98857 0.82458 0.96447 1.22701 0.98738 0.93392 0.83728 0.90407 1.22020 0.98465 0.85662 0.94131 1.44245 1.22017 1.08266 1.58376 1.19522 1.07947 0.90773 1.20928 0.91634 1.25224 1.02283 1.00654 0.96081 1.70481 1.46868 1.27301 1.10570 0.85580 0.77446 0.82074 0.77441 1.21830 1.22853 1.20298 1.20591 0.85766 0.98524 0.89415 1.21980 1.01752 0.95901 0.99501 1.21608 0.87612 0.95568 0.95399 1.87455 1.34777 1.86924 1.20449 1.22337 1.04951 0.94944 0.95801 1.21190 0.76441 0.88176 0.84163 1.90707 1.55977 1.76174 1.22899 0.92146 0.94805 0.89421 0.90806 0.87077 0.86796 0.90639 0.74873 0.89061 0.92763 0.93616 0.93620 0.94632 0.93730 0.95467 0.91671 0.93036 0.90234 0.92300 0.88156 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 71.98 0.74 -1.47 16 2 C 0.12 1.45 6.65 86.38 0.57 2.02 16 3 N -0.62 -9.68 2.93 -817.97 -2.40 -12.08 16 4 C 0.12 1.46 6.71 86.84 0.58 2.04 16 5 C -0.11 -1.26 3.54 -10.48 -0.04 -1.30 16 6 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 7 C 0.53 9.98 7.06 87.66 0.62 10.60 16 8 O -0.58 -15.60 15.50 -3.02 -0.05 -15.65 16 9 N -0.71 -13.09 5.49 -463.06 -2.54 -15.63 16 10 C 0.13 3.28 5.23 86.38 0.45 3.73 16 11 C 0.07 2.16 2.35 31.03 0.07 2.24 16 12 H 0.08 1.91 7.20 -2.39 -0.02 1.89 16 13 C 0.12 4.57 6.12 86.50 0.53 5.10 16 14 N -0.61 -28.51 2.61 -696.46 -1.82 -30.33 16 15 C -0.26 -14.06 9.55 84.03 0.80 -13.26 16 16 H 0.07 3.54 7.87 -2.91 -0.02 3.51 16 17 C -0.05 -2.55 4.72 84.86 0.40 -2.15 16 18 N -0.91 -50.29 8.38 21.65 0.18 -50.11 16 19 Si 0.94 44.58 29.65 68.60 2.03 46.62 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 C 0.18 8.19 4.98 87.40 0.44 8.63 16 24 C -0.15 -6.30 5.15 29.57 0.15 -6.15 16 25 C 0.07 2.39 6.05 70.32 0.43 2.81 16 26 O -0.38 -13.04 9.77 -144.95 -1.42 -14.46 16 27 C -0.14 -2.08 6.41 30.59 0.20 -1.88 16 28 C 0.51 10.74 8.02 87.90 0.71 11.44 16 29 O -0.58 -17.22 17.59 -3.02 -0.05 -17.28 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 1.07 7.93 -2.38 -0.02 1.06 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 1.28 6.96 -2.39 -0.02 1.26 16 37 H 0.41 5.77 8.46 -92.71 -0.78 4.99 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.05 1.78 7.67 -2.39 -0.02 1.76 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.24 13.35 8.31 -92.70 -0.77 12.58 16 43 H 0.04 2.31 5.96 -2.38 -0.01 2.30 16 44 H 0.03 1.05 8.10 -2.39 -0.02 1.03 16 45 H 0.06 3.40 6.29 -2.38 -0.01 3.39 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 48 H 0.06 1.50 7.27 -2.39 -0.02 1.49 16 49 H 0.10 1.77 7.89 -2.39 -0.02 1.75 16 50 H 0.13 1.43 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -73.82 393.66 0.74 -73.08 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.15 Total: 13.44 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 6.65 Total: 22.40 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -6.58 Total: -108.15 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -1.52 Total: -47.38 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.62 kcal Total: -73.82 0.74 -73.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073629969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.665 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds