Wall clock time and date at job start Sat Apr 11 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47325 * 2 1 4 4 C 1.46764 * 124.34786 * 89.99968 * 3 2 1 5 5 C 1.54479 * 105.47630 * 162.98738 * 4 3 2 6 6 H 1.08995 * 110.97095 * 267.30191 * 5 4 3 7 7 C 1.50695 * 110.97237 * 143.56974 * 5 4 3 8 8 O 1.21276 * 120.00053 * 0.02562 * 7 5 4 9 9 N 1.34775 * 119.99935 * 179.97438 * 7 5 4 10 10 C 1.46500 * 120.00158 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.47338 * 179.97438 * 10 9 7 12 12 H 1.09000 * 108.56605 * 60.00206 * 11 10 9 13 13 C 1.46918 * 108.62048 * 177.94797 * 11 10 9 14 14 N 1.50099 * 106.78508 * 178.04487 * 13 11 10 15 15 C 1.36940 * 120.75017 * 111.21885 * 14 13 11 16 16 H 1.08003 * 119.99989 * 155.69401 * 15 14 13 17 17 C 1.38811 * 119.99997 * 335.68728 * 15 14 13 18 18 N 1.31623 * 119.99848 * 340.85514 * 17 15 14 19 19 Si 1.86799 * 119.99806 * 160.85688 * 17 15 14 20 20 H 1.48492 * 109.47312 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47296 * 120.00080 * 19 17 15 22 22 H 1.48499 * 109.46778 * 239.99887 * 19 17 15 23 23 C 1.43424 * 118.61204 * 291.15330 * 14 13 11 24 24 C 1.55334 * 116.23743 * 89.40704 * 23 14 13 25 25 C 1.55190 * 108.87279 * 319.46336 * 24 23 14 26 26 O 1.39650 * 110.56874 * 322.14529 * 25 24 23 27 27 C 1.54628 * 101.76280 * 25.41467 * 5 4 3 28 28 C 1.34419 * 124.35252 * 269.70608 * 3 2 1 29 29 O 1.21279 * 124.93720 * 0.38280 * 28 3 2 30 30 H 1.08995 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47193 * 59.99688 * 1 2 3 32 32 H 1.09001 * 109.46924 * 299.99468 * 1 2 3 33 33 H 1.09000 * 109.47193 * 120.00312 * 2 1 3 34 34 H 1.09004 * 109.47123 * 239.99794 * 2 1 3 35 35 H 1.09006 * 110.24316 * 281.98720 * 4 3 2 36 36 H 1.09003 * 110.24476 * 43.89886 * 4 3 2 37 37 H 0.97005 * 120.00261 * 0.02562 * 9 7 5 38 38 H 1.09001 * 109.47593 * 300.00535 * 10 9 7 39 39 H 1.09009 * 109.46783 * 60.00301 * 10 9 7 40 40 H 1.09008 * 109.98827 * 297.24181 * 13 11 10 41 41 H 1.09003 * 109.99159 * 58.60456 * 13 11 10 42 42 H 0.96996 * 119.99648 * 180.02562 * 18 17 15 43 43 H 1.08998 * 108.12792 * 327.64578 * 23 14 13 44 44 H 1.08998 * 107.96384 * 211.03589 * 23 14 13 45 45 H 1.09003 * 109.56748 * 199.64469 * 24 23 14 46 46 H 1.08999 * 109.66896 * 79.33914 * 24 23 14 47 47 H 1.08992 * 109.25809 * 201.86531 * 25 24 23 48 48 H 1.08998 * 109.25716 * 82.42084 * 25 24 23 49 49 H 1.09004 * 110.49052 * 93.88202 * 27 5 4 50 50 H 1.09001 * 110.49121 * 216.52924 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 3.1745 3.3441 0.7488 6 1 4.2332 3.1033 0.8448 7 6 2.8381 4.5985 1.5131 8 8 1.9724 4.5775 2.3622 9 7 3.5000 5.7435 1.2537 10 6 3.1726 6.9632 1.9963 11 6 4.0633 8.1094 1.5126 12 1 3.8838 8.2631 0.4485 13 6 3.6861 9.3328 2.2334 14 7 4.6139 10.4156 1.7645 15 6 4.1495 11.4541 1.0022 16 1 4.6777 12.3961 0.9937 17 6 3.0000 11.2960 0.2404 18 7 2.5689 10.0886 -0.0576 19 14 2.0649 12.7968 -0.3619 20 1 2.7509 14.0279 0.1056 21 1 2.0188 12.7885 -1.8461 22 1 0.6813 12.7668 0.1765 23 6 5.9981 10.3411 2.1327 24 6 6.9265 9.5629 1.1604 25 6 6.1830 8.2944 0.6638 26 8 5.4248 7.7351 1.6946 27 6 2.7695 3.4754 -0.7377 28 6 2.2766 2.0944 -1.1097 29 8 2.1329 1.6903 -2.2442 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.3637 2.5307 1.6430 36 1 2.8311 1.5525 1.9389 37 1 4.1927 5.7603 0.5748 38 1 2.1265 7.2203 1.8298 39 1 3.3410 6.7970 3.0604 40 1 2.6557 9.6005 1.9994 41 1 3.7986 9.1824 3.3071 42 1 1.7658 9.9781 -0.5903 43 1 6.0632 9.8702 3.1136 44 1 6.3775 11.3590 2.2220 45 1 7.8384 9.2712 1.6813 46 1 7.1785 10.1951 0.3090 47 1 6.9126 7.5629 0.3166 48 1 5.5241 8.5639 -0.1616 49 1 1.9745 4.2122 -0.8529 50 1 3.6327 3.7460 -1.3459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073629970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:29 Heat of formation + Delta-G solvation = -83.954973 kcal Electronic energy + Delta-G solvation = -30843.324123 eV Core-core repulsion = 26678.606871 eV Total energy + Delta-G solvation = -4164.717252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.96219 -39.49224 -38.73023 -36.48301 -35.07915 -34.61615 -34.15448 -32.22371 -31.25290 -30.00926 -28.63055 -27.91090 -25.80852 -25.36313 -23.98778 -23.05375 -22.23222 -20.87487 -20.01644 -19.63420 -19.52219 -17.74208 -17.11473 -16.94977 -16.14609 -16.00386 -15.67458 -15.41234 -14.95464 -14.91806 -14.52473 -14.21935 -14.07322 -13.88796 -13.82541 -13.63651 -13.44117 -13.20963 -12.99338 -12.58177 -12.48657 -12.28437 -12.23934 -12.04520 -11.73629 -11.55038 -11.45403 -11.34019 -11.26767 -10.89863 -10.78929 -10.50283 -10.22813 -10.15020 -10.00888 -9.76481 -9.68403 -9.54914 -8.96872 -8.86632 -8.79030 -8.55531 -6.86746 -5.96871 -3.35175 2.38361 2.62186 2.71996 3.29662 3.30192 3.39813 3.41145 4.03674 4.15379 4.39963 4.58400 4.63642 4.65693 4.78209 4.89678 5.04204 5.08355 5.18761 5.22726 5.24176 5.35766 5.41087 5.50419 5.60134 5.65158 5.70320 5.76922 5.86947 5.90078 5.92765 6.08224 6.27133 6.29051 6.35100 6.40847 6.47727 6.61967 6.65083 6.76347 6.84190 6.85437 6.90965 7.06363 7.27225 7.66250 7.68603 7.95482 8.06760 8.27583 8.30963 9.02826 9.70829 10.24850 11.12415 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.002677 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.801265 B =10455.349747 C =11199.928854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.620 5.620 4 C 0.117 3.883 5 C -0.124 4.124 6 H 0.117 0.883 7 C 0.521 3.479 8 O -0.543 6.543 9 N -0.707 5.707 10 C 0.120 3.880 11 C 0.060 3.940 12 H 0.108 0.892 13 C 0.142 3.858 14 N -0.587 5.587 15 C -0.248 4.248 16 H 0.070 0.930 17 C 0.002 3.998 18 N -0.908 5.908 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.160 3.840 24 C -0.172 4.172 25 C 0.067 3.933 26 O -0.370 6.370 27 C -0.145 4.145 28 C 0.521 3.479 29 O -0.532 6.532 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.402 0.598 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.020 0.980 42 H 0.255 0.745 43 H 0.032 0.968 44 H 0.033 0.967 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.063 0.937 49 H 0.112 0.888 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -16.269 2.078 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.355 5.355 4 C -0.006 4.006 5 C -0.146 4.146 6 H 0.135 0.865 7 C 0.306 3.694 8 O -0.421 6.421 9 N -0.357 5.357 10 C -0.004 4.004 11 C 0.001 3.999 12 H 0.125 0.875 13 C 0.017 3.983 14 N -0.308 5.308 15 C -0.377 4.377 16 H 0.088 0.912 17 C -0.196 4.196 18 N -0.553 5.553 19 Si 0.734 3.266 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.215 1.215 23 C 0.031 3.969 24 C -0.213 4.213 25 C -0.011 4.011 26 O -0.288 6.288 27 C -0.186 4.186 28 C 0.309 3.691 29 O -0.408 6.408 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.236 0.764 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.130 0.870 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.343 -16.664 2.183 16.860 hybrid contribution -0.119 0.935 -0.896 1.300 sum 1.225 -15.729 1.287 15.829 Atomic orbital electron populations 1.22171 0.95680 1.02326 1.02765 1.21346 0.94544 0.80901 1.03095 1.48377 1.65819 1.13996 1.07316 1.21991 1.00727 0.91080 0.86775 1.22235 1.02568 0.94461 0.95331 0.86533 1.19948 0.81829 0.84380 0.83280 1.90701 1.32261 1.85274 1.33882 1.45896 1.39369 1.09530 1.40856 1.21756 0.99821 0.82965 0.95832 1.22214 0.80282 0.92909 1.04445 0.87471 1.20748 0.97805 0.86430 0.93292 1.44110 1.01447 1.25841 1.59388 1.19303 1.08493 0.90746 1.19154 0.91242 1.24894 1.00637 0.96442 0.97590 1.69861 1.24960 1.19928 1.40579 0.86200 0.79907 0.82555 0.77959 1.20392 1.21819 1.21520 1.20380 0.85058 0.96660 0.94757 1.23580 0.98818 0.97844 1.01083 1.22347 0.94647 0.93682 0.90401 1.87509 1.19356 1.71911 1.50068 1.22358 1.04591 0.96619 0.94993 1.20786 0.76649 0.87297 0.84376 1.90727 1.53882 1.75132 1.21082 0.91421 0.92192 0.92149 0.90258 0.90008 0.88884 0.89809 0.76373 0.90226 0.91832 0.87798 0.96228 0.93510 0.95002 0.94895 0.93195 0.92489 0.93074 0.91875 0.86977 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.12 1.00 6.65 -4.04 -0.03 0.98 16 3 N -0.62 -6.25 2.93 -172.41 -0.51 -6.75 16 4 C 0.12 1.09 6.71 -3.12 -0.02 1.07 16 5 C -0.12 -1.18 3.54 -90.14 -0.32 -1.50 16 6 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 7 C 0.52 6.90 7.06 -10.99 -0.08 6.83 16 8 O -0.54 -9.04 15.50 5.56 0.09 -8.96 16 9 N -0.71 -9.76 5.41 -60.29 -0.33 -10.09 16 10 C 0.12 2.02 5.25 -4.04 -0.02 2.00 16 11 C 0.06 1.14 1.98 -29.64 -0.06 1.08 16 12 H 0.11 2.30 5.24 -51.93 -0.27 2.03 16 13 C 0.14 3.07 4.71 -4.94 -0.02 3.05 16 14 N -0.59 -13.59 2.61 -174.51 -0.46 -14.05 16 15 C -0.25 -6.28 9.62 -15.06 -0.14 -6.42 16 16 H 0.07 1.78 7.87 -52.48 -0.41 1.36 16 17 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 18 N -0.91 -22.97 9.56 55.49 0.53 -22.44 16 19 Si 0.90 20.51 29.60 -169.99 -5.03 15.48 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.16 3.26 5.33 -4.43 -0.02 3.24 16 24 C -0.17 -3.07 6.75 -24.33 -0.16 -3.23 16 25 C 0.07 1.18 6.38 38.32 0.24 1.42 16 26 O -0.37 -6.71 9.44 -31.96 -0.30 -7.02 16 27 C -0.15 -1.47 6.41 -26.74 -0.17 -1.64 16 28 C 0.52 6.42 8.02 -10.86 -0.09 6.33 16 29 O -0.53 -8.48 17.59 5.56 0.10 -8.39 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 35 H 0.09 1.01 6.96 -51.93 -0.36 0.65 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.40 4.94 8.26 -40.82 -0.34 4.60 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 40 H 0.10 2.48 6.03 -51.92 -0.31 2.17 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.25 6.39 8.31 -40.82 -0.34 6.05 16 43 H 0.03 0.63 7.98 -51.93 -0.41 0.22 16 44 H 0.03 0.66 7.95 -51.93 -0.41 0.25 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 1.26 6.66 -51.93 -0.35 0.91 16 49 H 0.11 1.22 7.89 -51.93 -0.41 0.81 16 50 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -29.91 394.47 -8.88 -38.80 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.32 Total: 5.29 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -0.60 Total: 12.18 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.76 Total: -53.33 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.12 Total: -24.36 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.91 -8.88 -38.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073629970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.158 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds