Wall clock time and date at job start Sat Apr 11 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47325 * 2 1 4 4 C 1.46764 * 124.34786 * 89.99968 * 3 2 1 5 5 C 1.54479 * 105.47630 * 162.98738 * 4 3 2 6 6 H 1.08995 * 110.97095 * 267.30191 * 5 4 3 7 7 C 1.50695 * 110.97237 * 143.56974 * 5 4 3 8 8 O 1.21276 * 120.00053 * 0.02562 * 7 5 4 9 9 N 1.34775 * 119.99935 * 179.97438 * 7 5 4 10 10 C 1.46500 * 120.00158 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.47338 * 179.97438 * 10 9 7 12 12 H 1.09000 * 108.56605 * 60.00206 * 11 10 9 13 13 C 1.46918 * 108.62048 * 177.94797 * 11 10 9 14 14 N 1.50099 * 106.78508 * 178.04487 * 13 11 10 15 15 C 1.36940 * 120.75017 * 111.21885 * 14 13 11 16 16 H 1.08003 * 119.99989 * 155.69401 * 15 14 13 17 17 C 1.38811 * 119.99997 * 335.68728 * 15 14 13 18 18 N 1.31623 * 119.99848 * 340.85514 * 17 15 14 19 19 Si 1.86799 * 119.99806 * 160.85688 * 17 15 14 20 20 H 1.48492 * 109.47312 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47296 * 120.00080 * 19 17 15 22 22 H 1.48499 * 109.46778 * 239.99887 * 19 17 15 23 23 C 1.43424 * 118.61204 * 291.15330 * 14 13 11 24 24 C 1.55334 * 116.23743 * 89.40704 * 23 14 13 25 25 C 1.55190 * 108.87279 * 319.46336 * 24 23 14 26 26 O 1.39650 * 110.56874 * 322.14529 * 25 24 23 27 27 C 1.54628 * 101.76280 * 25.41467 * 5 4 3 28 28 C 1.34419 * 124.35252 * 269.70608 * 3 2 1 29 29 O 1.21279 * 124.93720 * 0.38280 * 28 3 2 30 30 H 1.08995 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47193 * 59.99688 * 1 2 3 32 32 H 1.09001 * 109.46924 * 299.99468 * 1 2 3 33 33 H 1.09000 * 109.47193 * 120.00312 * 2 1 3 34 34 H 1.09004 * 109.47123 * 239.99794 * 2 1 3 35 35 H 1.09006 * 110.24316 * 281.98720 * 4 3 2 36 36 H 1.09003 * 110.24476 * 43.89886 * 4 3 2 37 37 H 0.97005 * 120.00261 * 0.02562 * 9 7 5 38 38 H 1.09001 * 109.47593 * 300.00535 * 10 9 7 39 39 H 1.09009 * 109.46783 * 60.00301 * 10 9 7 40 40 H 1.09008 * 109.98827 * 297.24181 * 13 11 10 41 41 H 1.09003 * 109.99159 * 58.60456 * 13 11 10 42 42 H 0.96996 * 119.99648 * 180.02562 * 18 17 15 43 43 H 1.08998 * 108.12792 * 327.64578 * 23 14 13 44 44 H 1.08998 * 107.96384 * 211.03589 * 23 14 13 45 45 H 1.09003 * 109.56748 * 199.64469 * 24 23 14 46 46 H 1.08999 * 109.66896 * 79.33914 * 24 23 14 47 47 H 1.08992 * 109.25809 * 201.86531 * 25 24 23 48 48 H 1.08998 * 109.25716 * 82.42084 * 25 24 23 49 49 H 1.09004 * 110.49052 * 93.88202 * 27 5 4 50 50 H 1.09001 * 110.49121 * 216.52924 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 3.1745 3.3441 0.7488 6 1 4.2332 3.1033 0.8448 7 6 2.8381 4.5985 1.5131 8 8 1.9724 4.5775 2.3622 9 7 3.5000 5.7435 1.2537 10 6 3.1726 6.9632 1.9963 11 6 4.0633 8.1094 1.5126 12 1 3.8838 8.2631 0.4485 13 6 3.6861 9.3328 2.2334 14 7 4.6139 10.4156 1.7645 15 6 4.1495 11.4541 1.0022 16 1 4.6777 12.3961 0.9937 17 6 3.0000 11.2960 0.2404 18 7 2.5689 10.0886 -0.0576 19 14 2.0649 12.7968 -0.3619 20 1 2.7509 14.0279 0.1056 21 1 2.0188 12.7885 -1.8461 22 1 0.6813 12.7668 0.1765 23 6 5.9981 10.3411 2.1327 24 6 6.9265 9.5629 1.1604 25 6 6.1830 8.2944 0.6638 26 8 5.4248 7.7351 1.6946 27 6 2.7695 3.4754 -0.7377 28 6 2.2766 2.0944 -1.1097 29 8 2.1329 1.6903 -2.2442 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.3637 2.5307 1.6430 36 1 2.8311 1.5525 1.9389 37 1 4.1927 5.7603 0.5748 38 1 2.1265 7.2203 1.8298 39 1 3.3410 6.7970 3.0604 40 1 2.6557 9.6005 1.9994 41 1 3.7986 9.1824 3.3071 42 1 1.7658 9.9781 -0.5903 43 1 6.0632 9.8702 3.1136 44 1 6.3775 11.3590 2.2220 45 1 7.8384 9.2712 1.6813 46 1 7.1785 10.1951 0.3090 47 1 6.9126 7.5629 0.3166 48 1 5.5241 8.5639 -0.1616 49 1 1.9745 4.2122 -0.8529 50 1 3.6327 3.7460 -1.3459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073629970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:28 Heat of formation + Delta-G solvation = -103.435795 kcal Electronic energy + Delta-G solvation = -30844.168875 eV Core-core repulsion = 26678.606871 eV Total energy + Delta-G solvation = -4165.562004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.89616 -40.82073 -40.01677 -37.46453 -36.77265 -35.93126 -34.94262 -33.80225 -32.91468 -30.91394 -30.10899 -28.77642 -27.24204 -27.04111 -25.02868 -24.16952 -23.42926 -22.36239 -21.31514 -21.05151 -20.40179 -18.95753 -18.63993 -17.87275 -17.59092 -17.06122 -16.92634 -16.57117 -16.41754 -16.18444 -15.94391 -15.55221 -15.46181 -14.96980 -14.84354 -14.68695 -14.45067 -14.44237 -14.26554 -14.10985 -13.67376 -13.53752 -13.27860 -13.23646 -12.94918 -12.92424 -12.64932 -12.51577 -12.46618 -12.37632 -12.25592 -12.00662 -11.91543 -11.74691 -11.35213 -11.20330 -11.14345 -10.79345 -10.54891 -10.24120 -10.04219 -9.78873 -8.69749 -7.88979 -5.28680 1.44149 1.46577 1.52380 1.58408 1.59114 1.88404 2.24962 2.52804 3.14133 3.18847 3.28824 3.34884 3.53807 3.76259 3.86251 4.10274 4.15238 4.22413 4.24388 4.31136 4.40916 4.46140 4.46678 4.53803 4.58707 4.61773 4.74104 4.77663 4.80171 4.82694 4.83127 4.92192 4.93612 5.01194 5.11462 5.21304 5.21894 5.24512 5.37111 5.43110 5.46980 5.53999 5.54421 5.70089 6.01450 6.37712 6.54971 6.58063 7.04877 7.12659 7.23175 7.84967 8.37246 9.16906 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.002677 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.801265 B =10455.349747 C =11199.928854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.614 5.614 4 C 0.118 3.882 5 C -0.108 4.108 6 H 0.152 0.848 7 C 0.524 3.476 8 O -0.578 6.578 9 N -0.702 5.702 10 C 0.133 3.867 11 C 0.079 3.921 12 H 0.085 0.915 13 C 0.143 3.857 14 N -0.602 5.602 15 C -0.260 4.260 16 H 0.061 0.939 17 C -0.035 4.035 18 N -0.915 5.915 19 Si 0.955 3.045 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.293 1.293 23 C 0.154 3.846 24 C -0.166 4.166 25 C 0.068 3.932 26 O -0.364 6.364 27 C -0.141 4.141 28 C 0.514 3.486 29 O -0.576 6.576 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.412 0.588 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.025 0.975 42 H 0.250 0.750 43 H 0.036 0.964 44 H 0.028 0.972 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.089 0.911 48 H 0.036 0.964 49 H 0.101 0.899 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 -17.820 2.693 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.347 5.347 4 C -0.005 4.005 5 C -0.130 4.130 6 H 0.170 0.830 7 C 0.310 3.690 8 O -0.458 6.458 9 N -0.352 5.352 10 C 0.008 3.992 11 C 0.020 3.980 12 H 0.102 0.898 13 C 0.018 3.982 14 N -0.323 5.323 15 C -0.390 4.390 16 H 0.079 0.921 17 C -0.232 4.232 18 N -0.561 5.561 19 Si 0.785 3.215 20 H -0.201 1.201 21 H -0.222 1.222 22 H -0.220 1.220 23 C 0.026 3.974 24 C -0.207 4.207 25 C -0.009 4.009 26 O -0.283 6.283 27 C -0.181 4.181 28 C 0.302 3.698 29 O -0.456 6.456 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.248 0.752 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.107 0.893 48 H 0.054 0.946 49 H 0.119 0.881 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.984 -18.231 2.823 18.688 hybrid contribution -0.619 1.435 -1.014 1.863 sum 2.365 -16.796 1.810 17.058 Atomic orbital electron populations 1.22139 0.95682 1.03328 1.01397 1.21573 0.94553 0.80063 1.04311 1.48512 1.64652 1.14594 1.06972 1.22058 1.00324 0.91324 0.86746 1.22200 1.04561 0.92330 0.93894 0.83044 1.20499 0.80738 0.84969 0.82780 1.90695 1.33649 1.85846 1.35608 1.45777 1.39831 1.08819 1.40813 1.21368 0.98232 0.83637 0.95943 1.21746 0.81169 0.92660 1.02454 0.89775 1.20691 0.96354 0.87352 0.93801 1.44230 1.02820 1.25953 1.59333 1.19405 1.08935 0.91263 1.19429 0.92078 1.25422 1.01277 0.98289 0.98164 1.69981 1.24705 1.20714 1.40688 0.85396 0.78501 0.80519 0.77044 1.20105 1.22171 1.22022 1.20494 0.84222 0.97040 0.95654 1.23501 0.99189 0.97528 1.00456 1.22393 0.94672 0.94581 0.89283 1.87508 1.18722 1.71641 1.50397 1.22342 1.04942 0.95165 0.95697 1.21113 0.76374 0.88081 0.84189 1.90701 1.56020 1.76108 1.22801 0.89311 0.94768 0.92185 0.87082 0.90698 0.90558 0.86811 0.75192 0.92057 0.92010 0.90469 0.95674 0.94029 0.94570 0.95362 0.90344 0.92958 0.89345 0.94568 0.88107 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.24 71.98 0.74 -1.75 16 2 C 0.12 1.68 6.65 86.38 0.57 2.25 16 3 N -0.61 -11.32 2.93 -817.97 -2.40 -13.72 16 4 C 0.12 1.89 6.71 86.83 0.58 2.48 16 5 C -0.11 -1.78 3.54 -10.48 -0.04 -1.82 16 6 H 0.15 1.53 8.14 -2.39 -0.02 1.52 16 7 C 0.52 13.05 7.06 87.66 0.62 13.67 16 8 O -0.58 -18.80 15.50 -3.02 -0.05 -18.85 16 9 N -0.70 -18.44 5.41 -463.06 -2.51 -20.94 16 10 C 0.13 4.45 5.25 86.38 0.45 4.91 16 11 C 0.08 2.96 1.98 28.71 0.06 3.02 16 12 H 0.08 3.65 5.24 -2.39 -0.01 3.64 16 13 C 0.14 6.24 4.71 83.79 0.39 6.64 16 14 N -0.60 -27.97 2.61 -706.03 -1.84 -29.81 16 15 C -0.26 -13.35 9.62 84.03 0.81 -12.54 16 16 H 0.06 3.17 7.87 -2.91 -0.02 3.14 16 17 C -0.04 -1.79 4.93 84.86 0.42 -1.38 16 18 N -0.92 -47.14 9.56 21.65 0.21 -46.93 16 19 Si 0.96 42.64 29.60 68.60 2.03 44.67 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 C 0.15 6.12 5.33 87.75 0.47 6.59 16 24 C -0.17 -5.56 6.75 32.15 0.22 -5.35 16 25 C 0.07 2.25 6.38 72.73 0.46 2.71 16 26 O -0.36 -12.52 9.44 -137.29 -1.30 -13.82 16 27 C -0.14 -2.65 6.41 30.59 0.20 -2.45 16 28 C 0.51 12.22 8.02 87.90 0.70 12.92 16 29 O -0.58 -18.48 17.59 -3.03 -0.05 -18.54 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 1.22 7.92 -2.39 -0.02 1.20 16 35 H 0.08 1.55 6.96 -2.38 -0.02 1.53 16 36 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.41 9.25 8.26 -92.70 -0.77 8.48 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 39 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.08 3.80 6.03 -2.38 -0.01 3.79 16 41 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.25 12.77 8.31 -92.71 -0.77 12.00 16 43 H 0.04 1.39 7.98 -2.39 -0.02 1.37 16 44 H 0.03 1.13 7.95 -2.39 -0.02 1.11 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.04 1.40 6.66 -2.39 -0.02 1.39 16 49 H 0.10 2.16 7.89 -2.39 -0.02 2.14 16 50 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -66.01 394.47 0.92 -65.09 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.17 Total: 22.93 kcal Atomic # 6 Polarization: 23.26 SS G_CDS: 6.66 Total: 29.91 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -6.54 Total: -111.41 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -1.40 Total: -51.20 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -66.01 0.92 -65.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073629970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.345 kcal (2) G-P(sol) polarization free energy of solvation -66.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds