Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47078 * 2 1 4 4 C 1.46771 * 124.34636 * 90.00634 * 3 2 1 5 5 C 1.54483 * 105.47147 * 196.99490 * 4 3 2 6 6 H 1.08994 * 110.96704 * 92.73853 * 5 4 3 7 7 C 1.50697 * 110.96512 * 216.46439 * 5 4 3 8 8 O 1.21283 * 120.00339 * 356.91122 * 7 5 4 9 9 N 1.34780 * 119.99837 * 176.91005 * 7 5 4 10 10 C 1.46500 * 119.99949 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.46747 * 180.02562 * 10 9 7 12 12 H 1.09002 * 108.57232 * 57.94648 * 11 10 9 13 13 C 1.46924 * 108.61987 * 175.75674 * 11 10 9 14 14 N 1.50114 * 106.78161 * 177.92105 * 13 11 10 15 15 C 1.36940 * 120.63653 * 111.62102 * 14 13 11 16 16 H 1.07992 * 119.99793 * 155.26887 * 15 14 13 17 17 C 1.38809 * 119.99702 * 335.27521 * 15 14 13 18 18 N 1.31617 * 120.00373 * 341.06644 * 17 15 14 19 19 Si 1.86805 * 119.99790 * 161.07284 * 17 15 14 20 20 H 1.48501 * 109.47449 * 89.99573 * 19 17 15 21 21 H 1.48503 * 109.47002 * 209.99681 * 19 17 15 22 22 H 1.48497 * 109.46835 * 329.99353 * 19 17 15 23 23 C 1.43423 * 118.72568 * 291.35284 * 14 13 11 24 24 C 1.55333 * 116.24116 * 89.35184 * 23 14 13 25 25 C 1.55186 * 108.87373 * 319.46077 * 24 23 14 26 26 O 1.39642 * 110.56569 * 322.14595 * 25 24 23 27 27 C 1.54626 * 101.79830 * 334.60075 * 5 4 3 28 28 C 1.34417 * 124.35463 * 269.97913 * 3 2 1 29 29 O 1.21284 * 124.93726 * 359.63818 * 28 3 2 30 30 H 1.09004 * 109.47537 * 59.99500 * 1 2 3 31 31 H 1.08998 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47079 * 299.99287 * 1 2 3 33 33 H 1.09006 * 109.46929 * 240.00346 * 2 1 3 34 34 H 1.08998 * 109.47112 * 120.00511 * 2 1 3 35 35 H 1.08992 * 110.24531 * 77.99036 * 4 3 2 36 36 H 1.09003 * 110.31772 * 316.02881 * 4 3 2 37 37 H 0.96996 * 119.99773 * 0.02562 * 9 7 5 38 38 H 1.08992 * 109.47098 * 60.00026 * 10 9 7 39 39 H 1.08997 * 109.47149 * 299.99789 * 10 9 7 40 40 H 1.09002 * 109.98850 * 58.60072 * 13 11 10 41 41 H 1.08998 * 109.98628 * 297.24007 * 13 11 10 42 42 H 0.97002 * 120.00369 * 180.02562 * 18 17 15 43 43 H 1.09002 * 108.12465 * 211.10766 * 23 14 13 44 44 H 1.08995 * 108.13044 * 327.80386 * 23 14 13 45 45 H 1.09002 * 109.57093 * 79.27294 * 24 23 14 46 46 H 1.08996 * 109.57110 * 199.64093 * 24 23 14 47 47 H 1.09003 * 109.25876 * 82.42018 * 25 24 23 48 48 H 1.08996 * 109.25946 * 201.90273 * 25 24 23 49 49 H 1.08998 * 110.48738 * 143.45746 * 27 5 4 50 50 H 1.09002 * 110.48989 * 266.10475 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 1.2118 5 6 2.3535 3.6345 0.7488 6 1 1.3790 4.1130 0.8453 7 6 3.4043 4.3982 1.5126 8 8 4.0261 3.8523 2.3994 9 7 3.6533 5.6878 1.2102 10 6 4.6745 6.4304 1.9530 11 6 4.7567 7.8606 1.4160 12 1 3.7747 8.3241 1.5112 13 6 5.7109 8.6166 2.2386 14 7 5.7982 9.9932 1.6465 15 6 5.3060 11.0768 2.3239 16 1 5.6984 12.0627 2.1235 17 6 4.3028 10.9077 3.2683 18 7 3.5692 9.8150 3.2607 19 14 3.9939 12.2313 4.5498 20 1 2.9978 13.2017 4.0291 21 1 3.4730 11.6057 5.7919 22 1 5.2653 12.9384 4.8474 23 6 6.4122 10.1526 0.3602 24 6 5.4719 10.0280 -0.8699 25 6 4.4726 8.8668 -0.6223 26 8 5.1031 7.8090 0.0360 27 6 2.7506 3.4828 -0.7379 28 6 2.2715 2.0962 -1.1097 29 8 2.1349 1.6896 -2.2442 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.2499 1.8634 1.6431 36 1 1.4941 2.0271 1.9394 37 1 3.1558 6.1244 0.5012 38 1 5.6404 5.9402 1.8316 39 1 4.4095 6.4542 3.0100 40 1 6.6890 8.1362 2.2109 41 1 5.3523 8.6750 3.2663 42 1 2.8679 9.6970 3.9204 43 1 6.8833 11.1351 0.3287 44 1 7.1950 9.4005 0.2624 45 1 4.9226 10.9597 -1.0055 46 1 6.0627 9.8174 -1.7613 47 1 3.6454 9.2285 -0.0113 48 1 4.0860 8.5150 -1.5788 49 1 2.2491 4.2360 -1.3455 50 1 3.8320 3.5562 -0.8533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073629972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -84.049307 kcal Electronic energy + Delta-G solvation = -30835.405010 eV Core-core repulsion = 26670.683667 eV Total energy + Delta-G solvation = -4164.721343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.96961 -39.49058 -38.72866 -36.49734 -35.07439 -34.62307 -34.16097 -32.22308 -31.25711 -30.04677 -28.62456 -27.91388 -25.81268 -25.36047 -23.97604 -23.06735 -22.24636 -20.88075 -19.96646 -19.62586 -19.57467 -17.62938 -17.24524 -17.02445 -16.12122 -16.03414 -15.73261 -15.21284 -14.98533 -14.94879 -14.41032 -14.27824 -14.11920 -14.00224 -13.86749 -13.66814 -13.45681 -13.04269 -12.99181 -12.62216 -12.56013 -12.31629 -12.23665 -12.00260 -11.74428 -11.59090 -11.45132 -11.37220 -11.26498 -10.88994 -10.78549 -10.53800 -10.24155 -10.15670 -10.00850 -9.76307 -9.67856 -9.55065 -8.98066 -8.86362 -8.78860 -8.55326 -6.86196 -5.97308 -3.35652 2.36594 2.63321 2.70255 3.29223 3.29566 3.37749 3.40569 4.02235 4.14599 4.39425 4.57099 4.63014 4.66935 4.76558 4.86133 5.04028 5.05391 5.18635 5.22922 5.23906 5.33136 5.40602 5.48196 5.57201 5.65272 5.69519 5.77883 5.84052 5.87448 5.93475 6.08519 6.27316 6.27490 6.34916 6.40872 6.48150 6.62838 6.65713 6.76761 6.84483 6.84552 6.91505 7.06507 7.27045 7.65892 7.67791 7.94007 8.07530 8.27567 8.30690 9.02508 9.70616 10.24793 11.12008 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.002591 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.233030 B =10805.708779 C =11676.543777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.118 3.882 5 C -0.124 4.124 6 H 0.117 0.883 7 C 0.522 3.478 8 O -0.543 6.543 9 N -0.707 5.707 10 C 0.120 3.880 11 C 0.060 3.940 12 H 0.107 0.893 13 C 0.143 3.857 14 N -0.587 5.587 15 C -0.248 4.248 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.908 5.908 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.161 3.839 24 C -0.172 4.172 25 C 0.067 3.933 26 O -0.369 6.369 27 C -0.145 4.145 28 C 0.521 3.479 29 O -0.532 6.532 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.402 0.598 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.019 0.981 41 H 0.104 0.896 42 H 0.255 0.745 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.051 0.949 49 H 0.111 0.889 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 -13.928 -4.968 15.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.355 5.355 4 C -0.005 4.005 5 C -0.146 4.146 6 H 0.135 0.865 7 C 0.306 3.694 8 O -0.421 6.421 9 N -0.357 5.357 10 C -0.004 4.004 11 C 0.001 3.999 12 H 0.125 0.875 13 C 0.018 3.982 14 N -0.308 5.308 15 C -0.377 4.377 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.554 5.554 19 Si 0.734 3.266 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.206 1.206 23 C 0.032 3.968 24 C -0.214 4.214 25 C -0.011 4.011 26 O -0.288 6.288 27 C -0.185 4.185 28 C 0.309 3.691 29 O -0.409 6.409 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.236 0.764 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.037 0.963 41 H 0.122 0.878 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.130 0.870 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.659 -14.758 -4.856 16.220 hybrid contribution -0.785 1.218 0.430 1.511 sum -5.445 -13.540 -4.426 15.250 Atomic orbital electron populations 1.22164 0.95700 1.02378 1.02562 1.21346 0.94385 0.81015 1.03274 1.48376 1.65796 1.13978 1.07315 1.21980 1.03502 0.88237 0.86813 1.22238 1.00576 0.96539 0.95260 0.86460 1.19951 0.83530 0.82280 0.83649 1.90704 1.50852 1.68628 1.31947 1.45906 1.40178 1.11218 1.38372 1.21748 0.90583 0.91935 0.96101 1.22201 1.03297 0.92610 0.81760 0.87505 1.20745 0.94448 0.83731 0.99297 1.44084 1.68992 1.03675 1.14031 1.19251 1.13628 0.88088 1.16744 0.91345 1.24892 0.95668 0.97653 1.01337 1.69851 1.21154 1.27919 1.36461 0.86275 0.77904 0.81106 0.81350 1.21538 1.21523 1.20582 1.20371 0.93363 0.98266 0.84824 1.23582 0.99819 0.98091 0.99863 1.22347 0.95192 0.87701 0.95818 1.87516 1.72705 1.48084 1.20487 1.22362 1.04662 0.96412 0.95075 1.20809 0.76334 0.87622 0.84377 1.90726 1.53568 1.75536 1.21086 0.92212 0.91388 0.92290 0.89973 0.90158 0.88900 0.89774 0.76396 0.91823 0.90206 0.96273 0.87794 0.93497 0.94873 0.95029 0.92496 0.93152 0.91907 0.93042 0.87032 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 37.16 0.38 -0.82 16 2 C 0.12 0.98 6.65 -4.04 -0.03 0.95 16 3 N -0.62 -6.15 2.93 -172.38 -0.51 -6.65 16 4 C 0.12 1.09 6.69 -3.12 -0.02 1.07 16 5 C -0.12 -1.19 3.54 -90.14 -0.32 -1.50 16 6 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 7 C 0.52 6.90 7.06 -10.99 -0.08 6.83 16 8 O -0.54 -9.03 15.53 5.55 0.09 -8.95 16 9 N -0.71 -9.77 5.42 -60.30 -0.33 -10.10 16 10 C 0.12 2.02 5.24 -4.04 -0.02 2.00 16 11 C 0.06 1.14 1.95 -29.64 -0.06 1.08 16 12 H 0.11 2.29 5.25 -51.93 -0.27 2.01 16 13 C 0.14 3.09 4.70 -4.93 -0.02 3.06 16 14 N -0.59 -13.60 2.61 -174.50 -0.46 -14.06 16 15 C -0.25 -6.27 9.62 -15.06 -0.14 -6.42 16 16 H 0.07 1.74 7.87 -52.49 -0.41 1.33 16 17 C 0.00 0.05 4.93 -17.43 -0.09 -0.03 16 18 N -0.91 -22.82 9.57 55.49 0.53 -22.29 16 19 Si 0.90 20.36 29.59 -169.99 -5.03 15.32 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.16 3.29 5.33 -4.43 -0.02 3.26 16 24 C -0.17 -3.10 6.75 -24.34 -0.16 -3.26 16 25 C 0.07 1.19 6.38 38.31 0.24 1.43 16 26 O -0.37 -6.76 9.53 -31.94 -0.30 -7.06 16 27 C -0.14 -1.42 6.40 -26.71 -0.17 -1.59 16 28 C 0.52 6.26 8.02 -10.83 -0.09 6.17 16 29 O -0.53 -8.31 17.59 5.55 0.10 -8.21 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.73 7.92 -51.93 -0.41 0.31 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.99 7.01 -51.93 -0.36 0.62 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.40 4.94 8.33 -40.82 -0.34 4.60 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 2.47 6.03 -51.93 -0.31 2.16 16 42 H 0.25 6.34 8.31 -40.82 -0.34 6.00 16 43 H 0.03 0.67 7.96 -51.93 -0.41 0.26 16 44 H 0.03 0.63 7.98 -51.93 -0.41 0.22 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 1.25 6.66 -51.93 -0.35 0.90 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.11 1.14 7.89 -51.93 -0.41 0.73 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -29.77 394.65 -8.89 -38.66 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.33 Total: 5.16 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -0.60 Total: 12.23 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.76 Total: -53.10 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.12 Total: -24.22 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.77 -8.89 -38.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073629972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.392 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds