Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47078 * 2 1 4 4 C 1.46771 * 124.34636 * 90.00634 * 3 2 1 5 5 C 1.54483 * 105.47147 * 196.99490 * 4 3 2 6 6 H 1.08994 * 110.96704 * 92.73853 * 5 4 3 7 7 C 1.50697 * 110.96512 * 216.46439 * 5 4 3 8 8 O 1.21283 * 120.00339 * 356.91122 * 7 5 4 9 9 N 1.34780 * 119.99837 * 176.91005 * 7 5 4 10 10 C 1.46500 * 119.99949 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.46747 * 180.02562 * 10 9 7 12 12 H 1.09002 * 108.57232 * 57.94648 * 11 10 9 13 13 C 1.46924 * 108.61987 * 175.75674 * 11 10 9 14 14 N 1.50114 * 106.78161 * 177.92105 * 13 11 10 15 15 C 1.36940 * 120.63653 * 111.62102 * 14 13 11 16 16 H 1.07992 * 119.99793 * 155.26887 * 15 14 13 17 17 C 1.38809 * 119.99702 * 335.27521 * 15 14 13 18 18 N 1.31617 * 120.00373 * 341.06644 * 17 15 14 19 19 Si 1.86805 * 119.99790 * 161.07284 * 17 15 14 20 20 H 1.48501 * 109.47449 * 89.99573 * 19 17 15 21 21 H 1.48503 * 109.47002 * 209.99681 * 19 17 15 22 22 H 1.48497 * 109.46835 * 329.99353 * 19 17 15 23 23 C 1.43423 * 118.72568 * 291.35284 * 14 13 11 24 24 C 1.55333 * 116.24116 * 89.35184 * 23 14 13 25 25 C 1.55186 * 108.87373 * 319.46077 * 24 23 14 26 26 O 1.39642 * 110.56569 * 322.14595 * 25 24 23 27 27 C 1.54626 * 101.79830 * 334.60075 * 5 4 3 28 28 C 1.34417 * 124.35463 * 269.97913 * 3 2 1 29 29 O 1.21284 * 124.93726 * 359.63818 * 28 3 2 30 30 H 1.09004 * 109.47537 * 59.99500 * 1 2 3 31 31 H 1.08998 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47079 * 299.99287 * 1 2 3 33 33 H 1.09006 * 109.46929 * 240.00346 * 2 1 3 34 34 H 1.08998 * 109.47112 * 120.00511 * 2 1 3 35 35 H 1.08992 * 110.24531 * 77.99036 * 4 3 2 36 36 H 1.09003 * 110.31772 * 316.02881 * 4 3 2 37 37 H 0.96996 * 119.99773 * 0.02562 * 9 7 5 38 38 H 1.08992 * 109.47098 * 60.00026 * 10 9 7 39 39 H 1.08997 * 109.47149 * 299.99789 * 10 9 7 40 40 H 1.09002 * 109.98850 * 58.60072 * 13 11 10 41 41 H 1.08998 * 109.98628 * 297.24007 * 13 11 10 42 42 H 0.97002 * 120.00369 * 180.02562 * 18 17 15 43 43 H 1.09002 * 108.12465 * 211.10766 * 23 14 13 44 44 H 1.08995 * 108.13044 * 327.80386 * 23 14 13 45 45 H 1.09002 * 109.57093 * 79.27294 * 24 23 14 46 46 H 1.08996 * 109.57110 * 199.64093 * 24 23 14 47 47 H 1.09003 * 109.25876 * 82.42018 * 25 24 23 48 48 H 1.08996 * 109.25946 * 201.90273 * 25 24 23 49 49 H 1.08998 * 110.48738 * 143.45746 * 27 5 4 50 50 H 1.09002 * 110.48989 * 266.10475 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 1.2118 5 6 2.3535 3.6345 0.7488 6 1 1.3790 4.1130 0.8453 7 6 3.4043 4.3982 1.5126 8 8 4.0261 3.8523 2.3994 9 7 3.6533 5.6878 1.2102 10 6 4.6745 6.4304 1.9530 11 6 4.7567 7.8606 1.4160 12 1 3.7747 8.3241 1.5112 13 6 5.7109 8.6166 2.2386 14 7 5.7982 9.9932 1.6465 15 6 5.3060 11.0768 2.3239 16 1 5.6984 12.0627 2.1235 17 6 4.3028 10.9077 3.2683 18 7 3.5692 9.8150 3.2607 19 14 3.9939 12.2313 4.5498 20 1 2.9978 13.2017 4.0291 21 1 3.4730 11.6057 5.7919 22 1 5.2653 12.9384 4.8474 23 6 6.4122 10.1526 0.3602 24 6 5.4719 10.0280 -0.8699 25 6 4.4726 8.8668 -0.6223 26 8 5.1031 7.8090 0.0360 27 6 2.7506 3.4828 -0.7379 28 6 2.2715 2.0962 -1.1097 29 8 2.1349 1.6896 -2.2442 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.2499 1.8634 1.6431 36 1 1.4941 2.0271 1.9394 37 1 3.1558 6.1244 0.5012 38 1 5.6404 5.9402 1.8316 39 1 4.4095 6.4542 3.0100 40 1 6.6890 8.1362 2.2109 41 1 5.3523 8.6750 3.2663 42 1 2.8679 9.6970 3.9204 43 1 6.8833 11.1351 0.3287 44 1 7.1950 9.4005 0.2624 45 1 4.9226 10.9597 -1.0055 46 1 6.0627 9.8174 -1.7613 47 1 3.6454 9.2285 -0.0113 48 1 4.0860 8.5150 -1.5788 49 1 2.2491 4.2360 -1.3455 50 1 3.8320 3.5562 -0.8533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073629972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = -103.246983 kcal Electronic energy + Delta-G solvation = -30836.237483 eV Core-core repulsion = 26670.683667 eV Total energy + Delta-G solvation = -4165.553816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.89064 -40.81571 -40.01493 -37.45729 -36.76762 -35.93863 -34.92753 -33.80110 -32.90972 -30.91877 -30.10292 -28.75910 -27.24020 -27.04101 -25.00858 -24.13674 -23.44962 -22.36713 -21.30841 -21.02420 -20.41679 -18.93749 -18.55386 -18.00027 -17.64822 -17.01039 -16.95947 -16.59793 -16.32012 -16.16322 -15.93345 -15.53673 -15.35578 -15.03880 -14.89408 -14.69435 -14.64911 -14.31744 -14.14165 -14.02126 -13.74170 -13.50940 -13.31108 -13.25690 -12.91998 -12.85447 -12.60188 -12.55057 -12.44377 -12.39387 -12.29424 -12.00928 -11.90762 -11.75025 -11.35030 -11.19377 -11.14494 -10.78096 -10.53748 -10.23887 -10.04341 -9.78187 -8.68530 -7.87970 -5.28036 1.45639 1.48241 1.53146 1.59029 1.59900 1.88163 2.25122 2.53866 3.14542 3.18822 3.29741 3.34186 3.53564 3.76399 3.86562 4.10347 4.15504 4.22723 4.25114 4.31170 4.40265 4.46936 4.47930 4.55889 4.58844 4.60506 4.75780 4.77774 4.81864 4.82596 4.83774 4.93366 4.95008 5.01071 5.11309 5.21092 5.21349 5.27547 5.36362 5.43296 5.46815 5.53893 5.54179 5.70577 6.02534 6.38847 6.55367 6.57691 7.05806 7.13505 7.22804 7.85385 8.38075 9.18103 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.002591 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.233030 B =10805.708779 C =11676.543777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.615 5.615 4 C 0.119 3.881 5 C -0.110 4.110 6 H 0.147 0.853 7 C 0.524 3.476 8 O -0.577 6.577 9 N -0.703 5.703 10 C 0.133 3.867 11 C 0.078 3.922 12 H 0.086 0.914 13 C 0.143 3.857 14 N -0.602 5.602 15 C -0.264 4.264 16 H 0.060 0.940 17 C -0.034 4.034 18 N -0.915 5.915 19 Si 0.957 3.043 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.154 3.846 24 C -0.166 4.166 25 C 0.069 3.931 26 O -0.366 6.366 27 C -0.138 4.138 28 C 0.514 3.486 29 O -0.576 6.576 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.412 0.588 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.079 0.921 42 H 0.252 0.748 43 H 0.028 0.972 44 H 0.034 0.966 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.087 0.913 49 H 0.130 0.870 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.997 -14.535 -5.442 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.348 5.348 4 C -0.003 4.003 5 C -0.132 4.132 6 H 0.164 0.836 7 C 0.311 3.689 8 O -0.458 6.458 9 N -0.353 5.353 10 C 0.008 3.992 11 C 0.019 3.981 12 H 0.104 0.896 13 C 0.019 3.981 14 N -0.323 5.323 15 C -0.394 4.394 16 H 0.078 0.922 17 C -0.230 4.230 18 N -0.560 5.560 19 Si 0.786 3.214 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.026 3.974 24 C -0.207 4.207 25 C -0.009 4.009 26 O -0.284 6.284 27 C -0.179 4.179 28 C 0.302 3.698 29 O -0.456 6.456 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.248 0.752 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.056 0.944 48 H 0.105 0.895 49 H 0.148 0.852 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.617 -15.371 -5.336 17.213 hybrid contribution -0.418 1.396 0.592 1.573 sum -6.034 -13.975 -4.744 15.944 Atomic orbital electron populations 1.22105 0.94686 1.03380 1.01931 1.21554 0.95213 0.80146 1.03817 1.48509 1.64702 1.14574 1.06990 1.22017 1.03787 0.87775 0.86765 1.22189 1.00331 0.96360 0.94303 0.83579 1.20484 0.83505 0.81770 0.83157 1.90697 1.52219 1.69226 1.33617 1.45786 1.39643 1.11492 1.38355 1.21367 0.91308 0.91005 0.95496 1.21754 1.01128 0.93258 0.81935 0.89585 1.20693 0.95137 0.83747 0.98571 1.44201 1.69249 1.03675 1.15180 1.19362 1.13830 0.88487 1.17679 0.92203 1.25427 0.95783 0.99336 1.02502 1.69966 1.21043 1.28625 1.36379 0.85456 0.77390 0.79208 0.79325 1.21568 1.21845 1.20705 1.20475 0.93880 0.98111 0.84888 1.23505 0.99587 0.98224 0.99405 1.22388 0.94219 0.87508 0.96764 1.87518 1.72877 1.48211 1.19829 1.22346 1.04508 0.95712 0.95286 1.21150 0.75961 0.88506 0.84141 1.90701 1.55632 1.76521 1.22729 0.94171 0.89662 0.91436 0.91162 0.87911 0.90195 0.87433 0.75232 0.92274 0.91699 0.95918 0.90274 0.93900 0.95332 0.94770 0.92886 0.90497 0.94367 0.89509 0.85186 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 10.24 71.98 0.74 -1.26 16 2 C 0.11 1.65 6.65 86.38 0.57 2.22 16 3 N -0.61 -11.16 2.93 -817.89 -2.40 -13.56 16 4 C 0.12 1.93 6.69 86.83 0.58 2.51 16 5 C -0.11 -1.83 3.54 -10.48 -0.04 -1.87 16 6 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 7 C 0.52 13.06 7.06 87.66 0.62 13.68 16 8 O -0.58 -18.71 15.53 -3.04 -0.05 -18.76 16 9 N -0.70 -18.45 5.42 -463.07 -2.51 -20.96 16 10 C 0.13 4.44 5.24 86.38 0.45 4.89 16 11 C 0.08 2.94 1.95 28.71 0.06 3.00 16 12 H 0.09 3.69 5.25 -2.39 -0.01 3.67 16 13 C 0.14 6.26 4.70 83.79 0.39 6.65 16 14 N -0.60 -28.00 2.61 -706.00 -1.84 -29.85 16 15 C -0.26 -13.48 9.62 84.03 0.81 -12.67 16 16 H 0.06 3.09 7.87 -2.91 -0.02 3.07 16 17 C -0.03 -1.72 4.93 84.86 0.42 -1.30 16 18 N -0.91 -46.34 9.57 21.65 0.21 -46.13 16 19 Si 0.96 42.04 29.59 68.60 2.03 44.08 16 20 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 C 0.15 6.21 5.33 87.75 0.47 6.68 16 24 C -0.17 -5.67 6.75 32.15 0.22 -5.45 16 25 C 0.07 2.29 6.38 72.73 0.46 2.76 16 26 O -0.37 -12.79 9.53 -137.21 -1.31 -14.10 16 27 C -0.14 -2.43 6.40 30.61 0.20 -2.23 16 28 C 0.51 11.77 8.02 87.92 0.71 12.47 16 29 O -0.58 -17.84 17.59 -3.04 -0.05 -17.90 16 30 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 1.20 7.92 -2.38 -0.02 1.18 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.57 7.01 -2.39 -0.02 1.56 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.41 9.27 8.33 -92.71 -0.77 8.50 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 3.86 6.03 -2.39 -0.01 3.85 16 42 H 0.25 12.57 8.31 -92.71 -0.77 11.80 16 43 H 0.03 1.15 7.96 -2.39 -0.02 1.13 16 44 H 0.03 1.33 7.98 -2.39 -0.02 1.31 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.04 1.48 6.66 -2.39 -0.02 1.46 16 48 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.13 1.81 8.14 -2.39 -0.02 1.80 16 50 H 0.11 2.02 7.89 -2.39 -0.02 2.00 16 Total: -1.00 -64.77 394.65 0.90 -63.88 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.17 Total: 23.21 kcal Atomic # 6 Polarization: 23.44 SS G_CDS: 6.65 Total: 30.09 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -6.54 Total: -110.50 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -1.41 Total: -50.76 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.08 kcal Total: -64.77 0.90 -63.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073629972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.371 kcal (2) G-P(sol) polarization free energy of solvation -64.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds