Wall clock time and date at job start Sat Apr 11 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47697 * 2 1 4 4 C 1.50701 * 109.46977 * 120.00293 * 2 1 3 5 5 O 1.21284 * 120.00370 * 94.79258 * 4 2 1 6 6 N 1.34782 * 119.99787 * 274.79905 * 4 2 1 7 7 C 1.44960 * 117.32026 * 356.30796 * 6 4 2 8 8 C 1.51978 * 111.88357 * 203.66222 * 7 6 4 9 9 O 1.41322 * 111.53399 * 319.33298 * 8 7 6 10 10 C 1.40786 * 118.38886 * 56.95852 * 9 8 7 11 11 H 1.09003 * 109.65233 * 188.46133 * 10 9 8 12 12 C 1.54196 * 110.22175 * 67.66371 * 10 9 8 13 13 N 1.46880 * 106.39332 * 210.33862 * 12 10 9 14 14 C 1.36939 * 125.36245 * 197.80673 * 13 12 10 15 15 H 1.07999 * 119.99931 * 180.02562 * 14 13 12 16 16 C 1.38813 * 120.00276 * 0.03039 * 14 13 12 17 17 N 1.31623 * 119.99915 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 119.99998 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47146 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.47364 * 299.99314 * 18 16 14 21 21 H 1.48500 * 109.47440 * 59.99684 * 18 16 14 22 22 C 1.46785 * 109.26901 * 18.07638 * 13 12 10 23 23 C 1.44541 * 117.31978 * 176.31302 * 6 4 2 24 24 H 1.09009 * 109.48667 * 287.00030 * 23 6 4 25 25 N 1.46900 * 109.46763 * 239.99809 * 2 1 3 26 26 C 1.47017 * 110.99814 * 176.14519 * 25 2 1 27 27 C 1.53104 * 109.25790 * 177.60557 * 26 25 2 28 28 O 1.43015 * 109.25617 * 56.84809 * 27 26 25 29 29 C 1.43017 * 113.73923 * 301.33096 * 28 27 26 30 30 C 1.47007 * 111.00329 * 52.51139 * 25 2 1 31 31 H 1.09000 * 109.46869 * 293.14249 * 1 2 3 32 32 H 1.09004 * 109.46917 * 53.13786 * 1 2 3 33 33 H 1.08996 * 109.47508 * 173.13388 * 1 2 3 34 34 H 1.09001 * 108.99462 * 83.04747 * 7 6 4 35 35 H 1.09001 * 108.99824 * 324.28622 * 7 6 4 36 36 H 1.08993 * 109.06438 * 198.80135 * 8 7 6 37 37 H 1.09005 * 109.06079 * 79.86278 * 8 7 6 38 38 H 1.08994 * 110.07616 * 91.10218 * 12 10 9 39 39 H 1.09000 * 110.11807 * 329.59024 * 12 10 9 40 40 H 0.96994 * 120.00061 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.82740 * 118.17095 * 22 13 12 42 42 H 1.09005 * 109.82307 * 239.12808 * 22 13 12 43 43 H 1.08999 * 109.50816 * 297.54309 * 26 25 2 44 44 H 1.09007 * 109.50758 * 57.67239 * 26 25 2 45 45 H 1.08992 * 109.50649 * 296.91219 * 27 26 25 46 46 H 1.08999 * 109.50641 * 176.78096 * 27 26 25 47 47 H 1.08999 * 109.50483 * 298.73553 * 29 28 27 48 48 H 1.08995 * 109.54054 * 178.62876 * 29 28 27 49 49 H 1.09004 * 109.50245 * 302.32310 * 30 25 2 50 50 H 1.08998 * 109.51025 * 62.40572 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3172 -1.8882 1.1769 6 7 2.1648 -0.0371 2.3905 7 6 1.8865 1.3853 2.3696 8 6 2.5914 2.1171 3.4998 9 8 2.5441 1.3796 4.7044 10 6 3.0672 0.0726 4.7100 11 1 2.8253 -0.4150 5.6545 12 6 4.5973 0.1101 4.5229 13 7 4.9603 -1.1312 3.8265 14 6 6.2193 -1.6664 3.7653 15 1 6.3890 -2.5870 3.2267 16 6 7.2773 -1.0258 4.3954 17 7 7.0705 0.0964 5.0514 18 14 8.9944 -1.7564 4.3124 19 1 9.9388 -0.8874 5.0597 20 1 8.9851 -3.1127 4.9169 21 1 9.4248 -1.8495 2.8941 22 6 3.7622 -1.7040 3.2013 23 6 2.5729 -0.7927 3.5532 24 1 1.7441 -1.4141 3.8923 25 7 2.0196 -0.6926 -1.1994 26 6 3.4863 -0.6328 -1.2805 27 6 3.9564 -1.4155 -2.5094 28 8 3.3274 -0.8817 -3.6776 29 6 1.8986 -0.9247 -3.6328 30 6 1.4077 -0.1371 -2.4152 31 1 -0.3633 0.4039 0.9450 32 1 -0.3633 0.6165 -0.8223 33 1 -0.3634 -1.0202 -0.1228 34 1 0.8114 1.5379 2.4643 35 1 2.2195 1.7981 1.4173 36 1 2.1095 3.0825 3.6541 37 1 3.6330 2.2806 3.2230 38 1 5.0919 0.1530 5.4932 39 1 4.8803 0.9733 3.9206 40 1 7.8099 0.5442 5.4914 41 1 3.8928 -1.7442 2.1199 42 1 3.5852 -2.7065 3.5910 43 1 3.8040 0.4062 -1.3673 44 1 3.9187 -1.0724 -0.3816 45 1 3.6857 -2.4654 -2.3978 46 1 5.0385 -1.3263 -2.6058 47 1 1.5679 -1.9604 -3.5538 48 1 1.4918 -0.4811 -4.5415 49 1 0.3227 -0.2149 -2.3447 50 1 1.6914 0.9101 -2.5198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083293439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:06 Heat of formation + Delta-G solvation = -47.393997 kcal Electronic energy + Delta-G solvation = -32660.298205 eV Core-core repulsion = 28497.166356 eV Total energy + Delta-G solvation = -4163.131849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08719 -39.68553 -38.35048 -36.28917 -35.66272 -34.88085 -32.49665 -31.59825 -31.05826 -30.04804 -27.96662 -27.43993 -26.82873 -24.96425 -24.28924 -23.41376 -23.00010 -21.06784 -20.33634 -19.74221 -18.55535 -17.59493 -17.18283 -16.70326 -16.55326 -16.18982 -15.70331 -15.34704 -15.15121 -15.10809 -14.82745 -14.66717 -14.49179 -14.09090 -13.92170 -13.77425 -13.46097 -13.09184 -12.77458 -12.62365 -12.35464 -12.18431 -12.05541 -11.95566 -11.85620 -11.49178 -11.38487 -11.27231 -11.09626 -10.84839 -10.75107 -10.62244 -10.46136 -10.34738 -10.10872 -9.84793 -9.75742 -9.32416 -8.97669 -8.61265 -8.45290 -8.25220 -6.80468 -5.68170 -3.06428 2.71361 2.92990 3.41147 3.45198 3.46590 3.57926 3.77460 4.03593 4.35371 4.50090 4.66637 4.72982 4.78950 4.83414 4.86725 5.01154 5.06866 5.12744 5.14453 5.19716 5.25247 5.33135 5.40171 5.42859 5.52180 5.54136 5.55614 5.63501 5.64582 5.70872 5.80443 5.83943 5.85306 5.89799 5.94131 6.09902 6.22638 6.54293 6.65820 6.76996 6.83800 7.02317 7.14110 7.34310 7.46224 7.59976 7.71700 7.86490 8.28700 8.39758 9.21792 9.82338 10.44968 11.38610 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.004316 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.392062 B = 6485.804652 C = 8249.854037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.063 3.937 3 H 0.063 0.937 4 C 0.510 3.490 5 O -0.502 6.502 6 N -0.589 5.589 7 C 0.076 3.924 8 C 0.058 3.942 9 O -0.369 6.369 10 C 0.069 3.931 11 H 0.113 0.887 12 C 0.141 3.859 13 N -0.603 5.603 14 C -0.221 4.221 15 H 0.078 0.922 16 C -0.010 4.010 17 N -0.925 5.925 18 Si 0.914 3.086 19 H -0.290 1.290 20 H -0.284 1.284 21 H -0.286 1.286 22 C 0.125 3.875 23 C 0.112 3.888 24 H 0.070 0.930 25 N -0.514 5.514 26 C 0.016 3.984 27 C 0.068 3.932 28 O -0.388 6.388 29 C 0.065 3.935 30 C 0.016 3.984 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.020 0.980 40 H 0.252 0.748 41 H 0.061 0.939 42 H 0.032 0.968 43 H 0.040 0.960 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.100 0.900 47 H 0.060 0.940 48 H 0.096 0.904 49 H 0.090 0.910 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.320 4.695 -11.844 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 H 0.081 0.919 4 C 0.297 3.703 5 O -0.376 6.376 6 N -0.324 5.324 7 C -0.048 4.048 8 C -0.019 4.019 9 O -0.286 6.286 10 C 0.009 3.991 11 H 0.131 0.869 12 C 0.016 3.984 13 N -0.331 5.331 14 C -0.349 4.349 15 H 0.096 0.904 16 C -0.206 4.206 17 N -0.573 5.573 18 Si 0.744 3.256 19 H -0.216 1.216 20 H -0.211 1.211 21 H -0.213 1.213 22 C -0.001 4.001 23 C 0.008 3.992 24 H 0.087 0.913 25 N -0.240 5.240 26 C -0.112 4.112 27 C -0.009 4.009 28 O -0.307 6.307 29 C -0.012 4.012 30 C -0.112 4.112 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.038 0.962 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.118 0.882 47 H 0.078 0.922 48 H 0.114 0.886 49 H 0.108 0.892 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.060 3.774 -11.701 19.442 hybrid contribution 1.107 0.483 -0.053 1.208 sum -13.954 4.256 -11.754 18.734 Atomic orbital electron populations 1.21802 0.91814 1.03714 1.02541 1.21729 0.97323 0.96026 0.89751 0.91946 1.20329 0.78451 0.87683 0.83877 1.90685 1.46914 1.15726 1.84274 1.46720 1.67995 1.08157 1.09496 1.21730 1.00478 0.81679 1.00877 1.22223 1.00725 0.94363 0.84615 1.86848 1.82268 1.27075 1.32424 1.23043 0.97479 0.81348 0.97181 0.86906 1.22037 0.87441 0.88711 1.00241 1.44274 1.03736 1.24772 1.60337 1.19023 0.82886 1.05138 1.27863 0.90422 1.24781 0.98105 0.97325 1.00350 1.69852 1.30237 1.18114 1.39098 0.86159 0.83802 0.78110 0.77483 1.21586 1.21082 1.21256 1.21819 0.85136 0.94148 0.99011 1.21612 0.97979 0.93484 0.86114 0.91253 1.61950 1.06549 1.54892 1.00599 1.22863 0.87490 0.99776 1.01069 1.22646 0.97673 0.97264 0.83302 1.87967 1.18876 1.83714 1.40115 1.22631 0.81428 1.00129 0.97038 1.22874 1.00584 0.97298 0.90459 0.91397 0.91436 0.90718 0.91650 0.90292 0.87899 0.92298 0.88365 0.96191 0.93702 0.92165 0.95037 0.94153 0.88517 0.91855 0.88205 0.92176 0.88582 0.89174 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.41 37.16 0.31 -1.01 16 2 C 0.06 0.77 1.77 -68.86 -0.12 0.65 16 3 H 0.06 0.70 5.85 -51.93 -0.30 0.40 16 4 C 0.51 8.24 5.29 -10.98 -0.06 8.18 16 5 O -0.50 -9.87 12.70 5.55 0.07 -9.80 16 6 N -0.59 -9.46 3.09 -168.99 -0.52 -9.98 16 7 C 0.08 0.95 5.71 -5.39 -0.03 0.92 16 8 C 0.06 0.82 6.74 36.64 0.25 1.06 16 9 O -0.37 -6.42 10.25 -34.36 -0.35 -6.78 16 10 C 0.07 1.33 3.92 -26.27 -0.10 1.22 16 11 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 12 C 0.14 3.43 5.26 -3.21 -0.02 3.41 16 13 N -0.60 -15.73 3.39 -171.41 -0.58 -16.31 16 14 C -0.22 -6.26 10.25 -15.06 -0.15 -6.42 16 15 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.29 5.48 -17.43 -0.10 -0.38 16 17 N -0.92 -26.98 10.18 55.49 0.56 -26.42 16 18 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.12 2.81 6.03 -3.42 -0.02 2.79 16 23 C 0.11 2.10 3.35 -68.67 -0.23 1.87 16 24 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 25 N -0.51 -6.58 4.28 -227.72 -0.97 -7.56 16 26 C 0.02 0.22 5.36 -3.71 -0.02 0.20 16 27 C 0.07 0.87 7.01 37.21 0.26 1.13 16 28 O -0.39 -4.90 10.83 -35.23 -0.38 -5.28 16 29 C 0.06 0.64 7.01 37.21 0.26 0.90 16 30 C 0.02 0.16 5.15 -3.72 -0.02 0.14 16 31 H 0.07 0.59 7.36 -51.93 -0.38 0.21 16 32 H 0.07 0.48 6.70 -51.93 -0.35 0.13 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.67 7.54 -51.93 -0.39 0.27 16 35 H 0.08 0.85 5.83 -51.93 -0.30 0.55 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.95 6.73 -51.93 -0.35 0.60 16 38 H 0.10 2.69 6.25 -51.93 -0.32 2.37 16 39 H 0.02 0.53 6.47 -51.93 -0.34 0.19 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.06 1.45 5.19 -51.93 -0.27 1.18 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 1.65 6.56 -51.92 -0.34 1.31 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.09 0.71 6.22 -51.93 -0.32 0.39 16 50 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -33.26 368.71 -9.30 -42.55 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.87 Total: 2.02 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 0.21 Total: 14.67 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -1.51 Total: -60.26 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.66 Total: -21.86 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.26 -9.30 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083293439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.840 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds