Wall clock time and date at job start Sat Apr 11 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47697 * 2 1 4 4 C 1.50701 * 109.46977 * 120.00293 * 2 1 3 5 5 O 1.21284 * 120.00370 * 94.79258 * 4 2 1 6 6 N 1.34782 * 119.99787 * 274.79905 * 4 2 1 7 7 C 1.44960 * 117.32026 * 356.30796 * 6 4 2 8 8 C 1.51978 * 111.88357 * 203.66222 * 7 6 4 9 9 O 1.41322 * 111.53399 * 319.33298 * 8 7 6 10 10 C 1.40786 * 118.38886 * 56.95852 * 9 8 7 11 11 H 1.09003 * 109.65233 * 188.46133 * 10 9 8 12 12 C 1.54196 * 110.22175 * 67.66371 * 10 9 8 13 13 N 1.46880 * 106.39332 * 210.33862 * 12 10 9 14 14 C 1.36939 * 125.36245 * 197.80673 * 13 12 10 15 15 H 1.07999 * 119.99931 * 180.02562 * 14 13 12 16 16 C 1.38813 * 120.00276 * 0.03039 * 14 13 12 17 17 N 1.31623 * 119.99915 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 119.99998 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47146 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.47364 * 299.99314 * 18 16 14 21 21 H 1.48500 * 109.47440 * 59.99684 * 18 16 14 22 22 C 1.46785 * 109.26901 * 18.07638 * 13 12 10 23 23 C 1.44541 * 117.31978 * 176.31302 * 6 4 2 24 24 H 1.09009 * 109.48667 * 287.00030 * 23 6 4 25 25 N 1.46900 * 109.46763 * 239.99809 * 2 1 3 26 26 C 1.47017 * 110.99814 * 176.14519 * 25 2 1 27 27 C 1.53104 * 109.25790 * 177.60557 * 26 25 2 28 28 O 1.43015 * 109.25617 * 56.84809 * 27 26 25 29 29 C 1.43017 * 113.73923 * 301.33096 * 28 27 26 30 30 C 1.47007 * 111.00329 * 52.51139 * 25 2 1 31 31 H 1.09000 * 109.46869 * 293.14249 * 1 2 3 32 32 H 1.09004 * 109.46917 * 53.13786 * 1 2 3 33 33 H 1.08996 * 109.47508 * 173.13388 * 1 2 3 34 34 H 1.09001 * 108.99462 * 83.04747 * 7 6 4 35 35 H 1.09001 * 108.99824 * 324.28622 * 7 6 4 36 36 H 1.08993 * 109.06438 * 198.80135 * 8 7 6 37 37 H 1.09005 * 109.06079 * 79.86278 * 8 7 6 38 38 H 1.08994 * 110.07616 * 91.10218 * 12 10 9 39 39 H 1.09000 * 110.11807 * 329.59024 * 12 10 9 40 40 H 0.96994 * 120.00061 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.82740 * 118.17095 * 22 13 12 42 42 H 1.09005 * 109.82307 * 239.12808 * 22 13 12 43 43 H 1.08999 * 109.50816 * 297.54309 * 26 25 2 44 44 H 1.09007 * 109.50758 * 57.67239 * 26 25 2 45 45 H 1.08992 * 109.50649 * 296.91219 * 27 26 25 46 46 H 1.08999 * 109.50641 * 176.78096 * 27 26 25 47 47 H 1.08999 * 109.50483 * 298.73553 * 29 28 27 48 48 H 1.08995 * 109.54054 * 178.62876 * 29 28 27 49 49 H 1.09004 * 109.50245 * 302.32310 * 30 25 2 50 50 H 1.08998 * 109.51025 * 62.40572 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3172 -1.8882 1.1769 6 7 2.1648 -0.0371 2.3905 7 6 1.8865 1.3853 2.3696 8 6 2.5914 2.1171 3.4998 9 8 2.5441 1.3796 4.7044 10 6 3.0672 0.0726 4.7100 11 1 2.8253 -0.4150 5.6545 12 6 4.5973 0.1101 4.5229 13 7 4.9603 -1.1312 3.8265 14 6 6.2193 -1.6664 3.7653 15 1 6.3890 -2.5870 3.2267 16 6 7.2773 -1.0258 4.3954 17 7 7.0705 0.0964 5.0514 18 14 8.9944 -1.7564 4.3124 19 1 9.9388 -0.8874 5.0597 20 1 8.9851 -3.1127 4.9169 21 1 9.4248 -1.8495 2.8941 22 6 3.7622 -1.7040 3.2013 23 6 2.5729 -0.7927 3.5532 24 1 1.7441 -1.4141 3.8923 25 7 2.0196 -0.6926 -1.1994 26 6 3.4863 -0.6328 -1.2805 27 6 3.9564 -1.4155 -2.5094 28 8 3.3274 -0.8817 -3.6776 29 6 1.8986 -0.9247 -3.6328 30 6 1.4077 -0.1371 -2.4152 31 1 -0.3633 0.4039 0.9450 32 1 -0.3633 0.6165 -0.8223 33 1 -0.3634 -1.0202 -0.1228 34 1 0.8114 1.5379 2.4643 35 1 2.2195 1.7981 1.4173 36 1 2.1095 3.0825 3.6541 37 1 3.6330 2.2806 3.2230 38 1 5.0919 0.1530 5.4932 39 1 4.8803 0.9733 3.9206 40 1 7.8099 0.5442 5.4914 41 1 3.8928 -1.7442 2.1199 42 1 3.5852 -2.7065 3.5910 43 1 3.8040 0.4062 -1.3673 44 1 3.9187 -1.0724 -0.3816 45 1 3.6857 -2.4654 -2.3978 46 1 5.0385 -1.3263 -2.6058 47 1 1.5679 -1.9604 -3.5538 48 1 1.4918 -0.4811 -4.5415 49 1 0.3227 -0.2149 -2.3447 50 1 1.6914 0.9101 -2.5198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083293439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:05 Heat of formation + Delta-G solvation = -73.397336 kcal Electronic energy + Delta-G solvation = -32661.425794 eV Core-core repulsion = 28497.166356 eV Total energy + Delta-G solvation = -4164.259438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.37925 -40.77651 -39.61049 -37.78119 -36.93142 -36.19584 -34.37472 -32.59554 -32.03434 -31.64152 -29.58128 -29.04828 -27.72571 -26.70557 -25.47040 -24.71987 -24.11415 -22.56647 -21.59892 -21.05034 -19.91576 -19.18621 -18.43204 -18.31147 -17.72941 -17.13035 -17.05774 -16.83227 -16.34188 -16.30762 -15.98750 -15.92644 -15.73092 -15.64075 -15.13899 -15.06656 -14.78507 -14.45603 -14.18863 -14.03523 -13.77885 -13.43316 -13.22613 -13.09410 -13.00995 -12.85794 -12.79671 -12.58893 -12.39124 -12.32932 -12.26759 -12.17709 -12.10511 -11.85335 -11.68755 -11.53489 -10.85568 -10.78897 -10.72366 -10.33666 -9.60182 -9.40990 -8.91978 -7.86210 -5.28130 1.41799 1.45088 1.50029 1.52098 1.73577 2.43691 2.60566 2.73641 2.89558 3.22635 3.28208 3.52556 3.68590 3.74191 3.78191 3.84278 3.88110 3.96415 3.97636 4.08216 4.12505 4.17440 4.28660 4.30615 4.36264 4.42523 4.46893 4.53082 4.64936 4.66652 4.69487 4.72401 4.79852 4.83678 4.90430 4.96060 4.99410 5.04537 5.20567 5.35203 5.45049 5.57597 5.65157 5.70952 5.88462 6.11814 6.17714 6.24190 6.40462 7.03957 7.15460 7.70496 8.31775 9.17885 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.004316 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.392062 B = 6485.804652 C = 8249.854037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.069 3.931 3 H 0.080 0.920 4 C 0.504 3.496 5 O -0.547 6.547 6 N -0.594 5.594 7 C 0.072 3.928 8 C 0.050 3.950 9 O -0.371 6.371 10 C 0.087 3.913 11 H 0.122 0.878 12 C 0.152 3.848 13 N -0.621 5.621 14 C -0.245 4.245 15 H 0.073 0.927 16 C -0.058 4.058 17 N -0.946 5.946 18 Si 0.980 3.020 19 H -0.288 1.288 20 H -0.276 1.276 21 H -0.281 1.281 22 C 0.127 3.873 23 C 0.125 3.875 24 H 0.084 0.916 25 N -0.530 5.530 26 C 0.023 3.977 27 C 0.073 3.927 28 O -0.400 6.400 29 C 0.057 3.943 30 C 0.018 3.982 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.149 0.851 37 H 0.029 0.971 38 H 0.063 0.937 39 H -0.007 1.007 40 H 0.249 0.751 41 H 0.045 0.955 42 H 0.019 0.981 43 H 0.040 0.960 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.104 0.896 47 H 0.056 0.944 48 H 0.127 0.873 49 H 0.117 0.883 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.754 6.254 -13.293 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.042 4.042 3 H 0.097 0.903 4 C 0.292 3.708 5 O -0.424 6.424 6 N -0.329 5.329 7 C -0.050 4.050 8 C -0.027 4.027 9 O -0.288 6.288 10 C 0.028 3.972 11 H 0.140 0.860 12 C 0.026 3.974 13 N -0.349 5.349 14 C -0.374 4.374 15 H 0.091 0.909 16 C -0.251 4.251 17 N -0.595 5.595 18 Si 0.807 3.193 19 H -0.214 1.214 20 H -0.202 1.202 21 H -0.207 1.207 22 C 0.001 3.999 23 C 0.020 3.980 24 H 0.102 0.898 25 N -0.257 5.257 26 C -0.106 4.106 27 C -0.004 4.004 28 O -0.319 6.319 29 C -0.019 4.019 30 C -0.109 4.109 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.167 0.833 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.011 0.989 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.122 0.878 47 H 0.075 0.925 48 H 0.144 0.856 49 H 0.135 0.865 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.537 5.362 -13.170 22.577 hybrid contribution 1.857 0.023 0.344 1.889 sum -15.680 5.385 -12.826 20.961 Atomic orbital electron populations 1.21829 0.88972 1.03783 1.04603 1.21795 0.99272 0.95740 0.87407 0.90310 1.21160 0.77361 0.87419 0.84823 1.90660 1.48860 1.17927 1.84930 1.46864 1.67656 1.09668 1.08685 1.22042 1.02679 0.79144 1.01111 1.22580 0.99947 0.96061 0.84092 1.86854 1.81474 1.25971 1.34485 1.22679 0.93659 0.82965 0.97940 0.85996 1.21771 0.91026 0.87138 0.97436 1.44527 1.04120 1.25384 1.60840 1.19313 0.84480 1.05402 1.28202 0.90940 1.25598 1.01724 0.97789 1.00027 1.70095 1.30898 1.19042 1.39455 0.85145 0.79039 0.77547 0.77549 1.21351 1.20204 1.20678 1.21823 0.85769 0.94593 0.97672 1.21298 0.96550 0.93195 0.87001 0.89771 1.61922 1.05530 1.56118 1.02111 1.22666 0.88823 0.99405 0.99676 1.22537 0.98083 0.96551 0.83240 1.87951 1.20684 1.83619 1.39608 1.22913 0.79929 1.00467 0.98594 1.22993 1.01803 0.97410 0.88678 0.90125 0.88249 0.91973 0.87628 0.88258 0.83315 0.95299 0.91920 0.98906 0.94142 0.93743 0.96265 0.94139 0.92548 0.92781 0.87834 0.92518 0.85564 0.86528 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.41 71.98 0.61 -1.36 16 2 C 0.07 1.52 1.77 44.17 0.08 1.60 16 3 H 0.08 1.49 5.85 -2.39 -0.01 1.48 16 4 C 0.50 15.95 5.29 87.66 0.46 16.41 16 5 O -0.55 -22.13 12.70 -3.04 -0.04 -22.17 16 6 N -0.59 -18.38 3.09 -806.96 -2.49 -20.87 16 7 C 0.07 1.57 5.71 86.33 0.49 2.07 16 8 C 0.05 1.29 6.74 71.65 0.48 1.77 16 9 O -0.37 -12.40 10.25 -145.86 -1.50 -13.89 16 10 C 0.09 3.39 3.92 30.89 0.12 3.51 16 11 H 0.12 4.49 8.14 -2.39 -0.02 4.47 16 12 C 0.15 7.71 5.26 86.71 0.46 8.17 16 13 N -0.62 -34.00 3.39 -696.22 -2.36 -36.35 16 14 C -0.25 -14.54 10.25 84.03 0.86 -13.68 16 15 H 0.07 4.24 7.83 -2.91 -0.02 4.21 16 16 C -0.06 -3.40 5.48 84.86 0.47 -2.94 16 17 N -0.95 -57.27 10.18 21.65 0.22 -57.04 16 18 Si 0.98 47.02 29.55 68.60 2.03 49.04 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 C 0.13 5.99 6.03 86.63 0.52 6.52 16 23 C 0.12 4.68 3.35 45.56 0.15 4.83 16 24 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 25 N -0.53 -12.82 4.28 -874.37 -3.74 -16.56 16 26 C 0.02 0.65 5.36 86.32 0.46 1.11 16 27 C 0.07 1.89 7.01 72.02 0.50 2.39 16 28 O -0.40 -9.60 10.83 -148.98 -1.61 -11.21 16 29 C 0.06 0.99 7.01 72.01 0.50 1.49 16 30 C 0.02 0.30 5.15 86.31 0.44 0.74 16 31 H 0.08 1.00 7.36 -2.39 -0.02 0.98 16 32 H 0.10 0.84 6.70 -2.38 -0.02 0.83 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 1.57 7.54 -2.39 -0.02 1.55 16 35 H 0.10 1.79 5.83 -2.39 -0.01 1.77 16 36 H 0.15 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.03 0.92 6.73 -2.38 -0.02 0.91 16 38 H 0.06 3.62 6.25 -2.39 -0.01 3.60 16 39 H -0.01 -0.38 6.47 -2.39 -0.02 -0.40 16 40 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.04 2.28 5.19 -2.39 -0.01 2.27 16 42 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.06 2.06 6.56 -2.38 -0.02 2.04 16 45 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.12 1.30 6.22 -2.38 -0.01 1.28 16 50 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -77.56 368.71 -1.92 -79.49 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.94 Total: 16.94 kcal Atomic # 6 Polarization: 26.02 SS G_CDS: 6.62 Total: 32.63 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -8.37 Total: -130.83 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -3.15 Total: -47.27 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -77.56 -1.92 -79.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083293439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.090 kcal (2) G-P(sol) polarization free energy of solvation -77.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds