Wall clock time and date at job start Sat Apr 11 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47330 * 2 1 4 4 C 1.46769 * 124.34720 * 269.95085 * 3 2 1 5 5 C 1.54475 * 105.47422 * 163.00434 * 4 3 2 6 6 H 1.09001 * 110.99929 * 267.28246 * 5 4 3 7 7 C 1.50699 * 110.97002 * 143.53546 * 5 4 3 8 8 O 1.21278 * 119.99925 * 6.16292 * 7 5 4 9 9 N 1.34778 * 119.99964 * 186.44278 * 7 5 4 10 10 C 1.46503 * 120.00050 * 179.72216 * 9 7 5 11 11 C 1.53002 * 109.47160 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.50811 * 60.10358 * 11 10 9 13 13 C 1.53294 * 109.50981 * 180.25154 * 11 10 9 14 14 N 1.47149 * 108.38233 * 172.22292 * 13 11 10 15 15 C 1.36942 * 120.98076 * 129.44330 * 14 13 11 16 16 H 1.07996 * 120.00215 * 206.25538 * 15 14 13 17 17 C 1.38817 * 119.99476 * 26.25525 * 15 14 13 18 18 N 1.31614 * 120.00629 * 16.90433 * 17 15 14 19 19 Si 1.86801 * 119.99562 * 196.89886 * 17 15 14 20 20 H 1.48501 * 109.46773 * 90.00365 * 19 17 15 21 21 H 1.48502 * 109.47248 * 209.99850 * 19 17 15 22 22 H 1.48501 * 109.47478 * 330.00554 * 19 17 15 23 23 C 1.47154 * 118.04096 * 309.47198 * 14 13 11 24 24 C 1.53295 * 108.38381 * 50.52952 * 23 14 13 25 25 O 1.42953 * 109.51282 * 300.00246 * 11 10 9 26 26 C 1.54631 * 101.76525 * 25.41412 * 5 4 3 27 27 C 1.34418 * 124.35484 * 89.97610 * 3 2 1 28 28 O 1.21281 * 124.93623 * 0.41795 * 27 3 2 29 29 H 1.09002 * 109.47091 * 300.00502 * 1 2 3 30 30 H 1.08999 * 109.46817 * 59.99968 * 1 2 3 31 31 H 1.08993 * 109.47052 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47091 * 239.99498 * 2 1 3 33 33 H 1.08999 * 109.46817 * 120.00032 * 2 1 3 34 34 H 1.09005 * 110.24787 * 44.00231 * 4 3 2 35 35 H 1.09001 * 110.24606 * 282.00905 * 4 3 2 36 36 H 0.96999 * 119.99948 * 359.72962 * 9 7 5 37 37 H 1.09004 * 109.47035 * 300.00558 * 10 9 7 38 38 H 1.08999 * 109.46844 * 60.00170 * 10 9 7 39 39 H 1.08995 * 109.47220 * 60.00535 * 12 11 10 40 40 H 1.09006 * 109.46847 * 179.97438 * 12 11 10 41 41 H 1.08998 * 109.47450 * 299.99634 * 12 11 10 42 42 H 1.08998 * 109.68389 * 291.95285 * 13 11 10 43 43 H 1.09005 * 109.67985 * 52.51005 * 13 11 10 44 44 H 0.96997 * 120.00497 * 179.97438 * 18 17 15 45 45 H 1.09004 * 109.67843 * 290.80902 * 23 14 13 46 46 H 1.08993 * 109.68515 * 170.25638 * 23 14 13 47 47 H 1.09001 * 109.51292 * 187.77793 * 24 23 14 48 48 H 1.08997 * 109.51311 * 67.62376 * 24 23 14 49 49 H 1.09002 * 110.48398 * 93.87884 * 26 5 4 50 50 H 1.09000 * 110.48569 * 216.52419 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2955 2.1615 -1.2118 5 6 2.3542 3.6342 -0.7492 6 1 1.3799 4.1132 -0.8460 7 6 3.4057 4.3977 -1.5124 8 8 3.9888 3.8692 -2.4350 9 7 3.7019 5.6661 -1.1659 10 6 4.7284 6.4063 -1.9040 11 6 4.8688 7.8105 -1.3128 12 6 5.2768 7.7071 0.1582 13 6 5.9383 8.5880 -2.0885 14 7 5.9223 9.9852 -1.6271 15 6 7.0767 10.6140 -1.2433 16 1 7.0379 11.4306 -0.5377 17 6 8.2968 10.2017 -1.7614 18 7 8.3334 9.4556 -2.8451 19 14 9.8868 10.7059 -0.9205 20 1 10.2548 9.6862 0.0945 21 1 10.9696 10.8112 -1.9313 22 1 9.7001 12.0208 -0.2561 23 6 4.6293 10.6866 -1.5896 24 6 3.6236 9.8068 -0.8382 25 8 3.6199 8.4985 -1.4147 26 6 2.7507 3.4820 0.7377 27 6 2.2709 2.0965 1.1097 28 8 2.1343 1.6899 2.2441 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.4947 2.0262 -1.9389 35 1 3.2513 1.8630 -1.6424 36 1 3.2356 6.0888 -0.4279 37 1 5.6811 5.8824 -1.8256 38 1 4.4397 6.4803 -2.9524 39 1 6.2300 7.1841 0.2349 40 1 5.3771 8.7078 0.5786 41 1 4.5145 7.1560 0.7089 42 1 6.9188 8.1504 -1.9007 43 1 5.7175 8.5512 -3.1553 44 1 9.1860 9.1678 -3.2072 45 1 4.2767 10.8610 -2.6062 46 1 4.7430 11.6387 -1.0715 47 1 2.6277 10.2426 -0.9180 48 1 3.9102 9.7412 0.2114 49 1 3.8321 3.5551 0.8535 50 1 2.2493 4.2354 1.3452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107982967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:45 Heat of formation + Delta-G solvation = -87.934420 kcal Electronic energy + Delta-G solvation = -30725.965277 eV Core-core repulsion = 26561.075464 eV Total energy + Delta-G solvation = -4164.889814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.06720 -39.63984 -38.78566 -36.57376 -35.04027 -34.39986 -34.23348 -31.84961 -31.30341 -30.05121 -28.03623 -27.98674 -26.61368 -25.78860 -23.96259 -23.29075 -22.94598 -21.24657 -20.24785 -19.65438 -18.75982 -17.76008 -17.27758 -17.03047 -16.16463 -16.00730 -15.68442 -15.26397 -15.19130 -14.88897 -14.39129 -14.34021 -14.09948 -14.05563 -13.84175 -13.57191 -13.53528 -13.48507 -13.04755 -12.77767 -12.66273 -12.50635 -12.27978 -12.04093 -11.79098 -11.69148 -11.61998 -11.43169 -11.24203 -11.06407 -10.86985 -10.72547 -10.36687 -10.28187 -10.27917 -10.03324 -9.81552 -9.58823 -9.12018 -9.04406 -8.93879 -8.58399 -6.79282 -5.89049 -3.32579 2.29582 2.52749 2.61674 3.14832 3.31342 3.38630 3.39840 3.92762 4.03174 4.18940 4.39611 4.50093 4.55102 4.69738 4.80795 4.93295 5.00583 5.08533 5.15740 5.24220 5.29293 5.34054 5.40012 5.41093 5.46103 5.50811 5.59611 5.62855 5.79082 5.86734 5.88332 5.94421 6.02478 6.08271 6.20983 6.24767 6.38192 6.49006 6.60607 6.70225 6.77405 6.78065 7.01666 7.40737 7.51402 7.66830 7.81452 7.87148 8.17574 8.28441 9.06339 9.69267 10.26087 11.18951 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019887 B = 0.002395 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.620535 B =11687.347551 C =11969.348674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.118 3.882 5 C -0.123 4.123 6 H 0.119 0.881 7 C 0.521 3.479 8 O -0.539 6.539 9 N -0.711 5.711 10 C 0.139 3.861 11 C 0.078 3.922 12 C -0.162 4.162 13 C 0.159 3.841 14 N -0.590 5.590 15 C -0.255 4.255 16 H 0.069 0.931 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.384 6.384 26 C -0.147 4.147 27 C 0.521 3.479 28 O -0.531 6.531 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.404 0.596 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.097 0.903 43 H 0.029 0.971 44 H 0.256 0.744 45 H 0.026 0.974 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.048 0.952 49 H 0.111 0.889 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.951 -13.378 4.593 20.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.354 5.354 4 C -0.005 4.005 5 C -0.145 4.145 6 H 0.137 0.863 7 C 0.306 3.694 8 O -0.416 6.416 9 N -0.362 5.362 10 C 0.015 3.985 11 C 0.037 3.963 12 C -0.220 4.220 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.304 6.304 26 C -0.187 4.187 27 C 0.308 3.692 28 O -0.408 6.408 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.239 0.761 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.115 0.885 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.067 0.933 49 H 0.129 0.871 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.603 -14.149 4.336 20.790 hybrid contribution 0.818 0.742 0.668 1.291 sum -13.785 -13.407 5.004 19.870 Atomic orbital electron populations 1.22163 0.95675 1.02422 1.02534 1.21355 0.94396 0.80953 1.03338 1.48379 1.65782 1.14013 1.07275 1.21979 1.03545 0.88145 0.86841 1.22238 1.00545 0.96588 0.95164 0.86327 1.19978 0.83296 0.82049 0.84091 1.90729 1.52443 1.68531 1.29912 1.45955 1.40751 1.13179 1.36290 1.21409 0.91228 0.89528 0.96302 1.22555 0.86991 0.90731 0.96052 1.22212 1.00698 1.03075 0.95995 1.21296 0.96785 0.84212 0.94442 1.43995 1.02277 1.07771 1.77356 1.19168 0.83878 1.16052 1.19295 0.91375 1.25040 0.98252 1.00403 0.95808 1.70005 1.24956 1.39829 1.19761 0.86278 0.83306 0.78359 0.78759 1.21343 1.21664 1.20419 1.21598 0.87514 0.94930 0.97707 1.23038 0.99425 0.83873 0.96830 1.87800 1.32920 1.28810 1.80871 1.22374 1.04622 0.96598 0.95131 1.20765 0.76408 0.87583 0.84408 1.90732 1.53502 1.75495 1.21074 0.92221 0.92297 0.91349 0.90110 0.89940 0.89704 0.88918 0.76110 0.89925 0.90669 0.91864 0.90778 0.93904 0.88528 0.95245 0.93393 0.95646 0.92034 0.90163 0.93344 0.87080 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.24 37.16 0.38 -0.71 16 2 C 0.12 0.90 6.65 -4.04 -0.03 0.87 16 3 N -0.62 -5.66 2.93 -172.41 -0.51 -6.16 16 4 C 0.12 0.98 6.66 -3.12 -0.02 0.96 16 5 C -0.12 -1.03 3.54 -90.14 -0.32 -1.35 16 6 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 7 C 0.52 6.23 7.07 -10.99 -0.08 6.15 16 8 O -0.54 -8.41 15.57 5.56 0.09 -8.32 16 9 N -0.71 -8.67 5.10 -60.29 -0.31 -8.98 16 10 C 0.14 2.16 4.82 -4.04 -0.02 2.14 16 11 C 0.08 1.34 0.76 -90.47 -0.07 1.27 16 12 C -0.16 -2.58 7.92 37.16 0.29 -2.29 16 13 C 0.16 3.55 4.12 -3.54 -0.01 3.54 16 14 N -0.59 -13.88 2.57 -171.83 -0.44 -14.32 16 15 C -0.25 -6.60 9.65 -15.06 -0.15 -6.75 16 16 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 17 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 18 N -0.90 -25.13 11.14 55.49 0.62 -24.51 16 19 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 23 C 0.11 2.15 6.73 -3.53 -0.02 2.12 16 24 C 0.05 0.75 6.60 37.31 0.25 1.00 16 25 O -0.38 -6.55 9.97 -35.23 -0.35 -6.91 16 26 C -0.15 -1.26 6.36 -26.74 -0.17 -1.43 16 27 C 0.52 5.81 8.02 -10.86 -0.09 5.72 16 28 O -0.53 -7.90 17.59 5.56 0.10 -7.80 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.68 7.92 -51.93 -0.41 0.27 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.91 7.06 -51.93 -0.37 0.54 16 36 H 0.40 4.24 7.20 -40.82 -0.29 3.95 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.31 6.12 -51.93 -0.32 1.00 16 41 H 0.04 0.55 6.87 -51.93 -0.36 0.19 16 42 H 0.10 2.39 6.14 -51.93 -0.32 2.08 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 47 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.05 0.76 6.25 -51.93 -0.32 0.44 16 49 H 0.11 0.99 7.89 -51.93 -0.41 0.58 16 50 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -32.30 395.32 -8.27 -40.57 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.26 Total: 3.31 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -0.14 Total: 11.27 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.64 Total: -53.97 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.17 Total: -23.03 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.30 -8.27 -40.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107982967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.361 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds