Wall clock time and date at job start Sat Apr 11 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47330 * 2 1 4 4 C 1.46769 * 124.34720 * 269.95085 * 3 2 1 5 5 C 1.54475 * 105.47422 * 163.00434 * 4 3 2 6 6 H 1.09001 * 110.99929 * 267.28246 * 5 4 3 7 7 C 1.50699 * 110.97002 * 143.53546 * 5 4 3 8 8 O 1.21278 * 119.99925 * 6.16292 * 7 5 4 9 9 N 1.34778 * 119.99964 * 186.44278 * 7 5 4 10 10 C 1.46503 * 120.00050 * 179.72216 * 9 7 5 11 11 C 1.53002 * 109.47160 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.50811 * 60.10358 * 11 10 9 13 13 C 1.53294 * 109.50981 * 180.25154 * 11 10 9 14 14 N 1.47149 * 108.38233 * 172.22292 * 13 11 10 15 15 C 1.36942 * 120.98076 * 129.44330 * 14 13 11 16 16 H 1.07996 * 120.00215 * 206.25538 * 15 14 13 17 17 C 1.38817 * 119.99476 * 26.25525 * 15 14 13 18 18 N 1.31614 * 120.00629 * 16.90433 * 17 15 14 19 19 Si 1.86801 * 119.99562 * 196.89886 * 17 15 14 20 20 H 1.48501 * 109.46773 * 90.00365 * 19 17 15 21 21 H 1.48502 * 109.47248 * 209.99850 * 19 17 15 22 22 H 1.48501 * 109.47478 * 330.00554 * 19 17 15 23 23 C 1.47154 * 118.04096 * 309.47198 * 14 13 11 24 24 C 1.53295 * 108.38381 * 50.52952 * 23 14 13 25 25 O 1.42953 * 109.51282 * 300.00246 * 11 10 9 26 26 C 1.54631 * 101.76525 * 25.41412 * 5 4 3 27 27 C 1.34418 * 124.35484 * 89.97610 * 3 2 1 28 28 O 1.21281 * 124.93623 * 0.41795 * 27 3 2 29 29 H 1.09002 * 109.47091 * 300.00502 * 1 2 3 30 30 H 1.08999 * 109.46817 * 59.99968 * 1 2 3 31 31 H 1.08993 * 109.47052 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47091 * 239.99498 * 2 1 3 33 33 H 1.08999 * 109.46817 * 120.00032 * 2 1 3 34 34 H 1.09005 * 110.24787 * 44.00231 * 4 3 2 35 35 H 1.09001 * 110.24606 * 282.00905 * 4 3 2 36 36 H 0.96999 * 119.99948 * 359.72962 * 9 7 5 37 37 H 1.09004 * 109.47035 * 300.00558 * 10 9 7 38 38 H 1.08999 * 109.46844 * 60.00170 * 10 9 7 39 39 H 1.08995 * 109.47220 * 60.00535 * 12 11 10 40 40 H 1.09006 * 109.46847 * 179.97438 * 12 11 10 41 41 H 1.08998 * 109.47450 * 299.99634 * 12 11 10 42 42 H 1.08998 * 109.68389 * 291.95285 * 13 11 10 43 43 H 1.09005 * 109.67985 * 52.51005 * 13 11 10 44 44 H 0.96997 * 120.00497 * 179.97438 * 18 17 15 45 45 H 1.09004 * 109.67843 * 290.80902 * 23 14 13 46 46 H 1.08993 * 109.68515 * 170.25638 * 23 14 13 47 47 H 1.09001 * 109.51292 * 187.77793 * 24 23 14 48 48 H 1.08997 * 109.51311 * 67.62376 * 24 23 14 49 49 H 1.09002 * 110.48398 * 93.87884 * 26 5 4 50 50 H 1.09000 * 110.48569 * 216.52419 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2955 2.1615 -1.2118 5 6 2.3542 3.6342 -0.7492 6 1 1.3799 4.1132 -0.8460 7 6 3.4057 4.3977 -1.5124 8 8 3.9888 3.8692 -2.4350 9 7 3.7019 5.6661 -1.1659 10 6 4.7284 6.4063 -1.9040 11 6 4.8688 7.8105 -1.3128 12 6 5.2768 7.7071 0.1582 13 6 5.9383 8.5880 -2.0885 14 7 5.9223 9.9852 -1.6271 15 6 7.0767 10.6140 -1.2433 16 1 7.0379 11.4306 -0.5377 17 6 8.2968 10.2017 -1.7614 18 7 8.3334 9.4556 -2.8451 19 14 9.8868 10.7059 -0.9205 20 1 10.2548 9.6862 0.0945 21 1 10.9696 10.8112 -1.9313 22 1 9.7001 12.0208 -0.2561 23 6 4.6293 10.6866 -1.5896 24 6 3.6236 9.8068 -0.8382 25 8 3.6199 8.4985 -1.4147 26 6 2.7507 3.4820 0.7377 27 6 2.2709 2.0965 1.1097 28 8 2.1343 1.6899 2.2441 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.4947 2.0262 -1.9389 35 1 3.2513 1.8630 -1.6424 36 1 3.2356 6.0888 -0.4279 37 1 5.6811 5.8824 -1.8256 38 1 4.4397 6.4803 -2.9524 39 1 6.2300 7.1841 0.2349 40 1 5.3771 8.7078 0.5786 41 1 4.5145 7.1560 0.7089 42 1 6.9188 8.1504 -1.9007 43 1 5.7175 8.5512 -3.1553 44 1 9.1860 9.1678 -3.2072 45 1 4.2767 10.8610 -2.6062 46 1 4.7430 11.6387 -1.0715 47 1 2.6277 10.2426 -0.9180 48 1 3.9102 9.7412 0.2114 49 1 3.8321 3.5551 0.8535 50 1 2.2493 4.2354 1.3452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107982967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:43 Heat of formation + Delta-G solvation = -110.326232 kcal Electronic energy + Delta-G solvation = -30726.936259 eV Core-core repulsion = 26561.075464 eV Total energy + Delta-G solvation = -4165.860796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.90901 -40.86991 -40.00752 -37.46092 -36.51579 -35.89606 -34.93075 -33.23252 -33.07931 -30.76480 -29.54714 -28.76405 -28.03337 -27.32287 -25.00262 -24.71498 -23.75980 -22.74855 -21.24074 -20.42247 -20.23353 -18.94626 -18.59271 -18.00583 -17.42688 -17.01914 -16.82204 -16.77013 -16.21738 -16.07936 -15.87525 -15.56095 -15.26883 -15.03922 -15.00533 -14.69948 -14.66229 -14.61155 -14.28225 -14.05865 -13.75802 -13.36671 -13.30618 -13.16040 -12.90062 -12.85532 -12.78393 -12.53115 -12.47896 -12.42809 -12.39124 -12.12047 -12.00841 -11.92489 -11.81739 -11.23238 -11.07061 -10.80944 -10.68967 -10.47982 -10.09143 -9.77819 -8.70098 -7.88838 -5.35215 1.46341 1.46900 1.48142 1.56230 1.57960 1.86212 2.19951 2.48877 2.82259 3.17257 3.25762 3.33608 3.53320 3.74535 3.87814 3.97372 4.05655 4.11246 4.14631 4.20856 4.25556 4.45794 4.48190 4.49914 4.56552 4.60094 4.62469 4.68274 4.74579 4.76738 4.83956 4.84250 4.94404 4.95605 5.00892 5.08223 5.15918 5.24340 5.27904 5.39833 5.40359 5.54191 5.56571 5.63316 6.04015 6.30831 6.39883 6.54961 7.06746 7.08673 7.22056 7.78073 8.31327 9.16527 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019887 B = 0.002395 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.620535 B =11687.347551 C =11969.348674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.615 5.615 4 C 0.118 3.882 5 C -0.108 4.108 6 H 0.151 0.849 7 C 0.525 3.475 8 O -0.577 6.577 9 N -0.701 5.701 10 C 0.150 3.850 11 C 0.094 3.906 12 C -0.154 4.154 13 C 0.165 3.835 14 N -0.607 5.607 15 C -0.257 4.257 16 H 0.073 0.927 17 C -0.049 4.049 18 N -0.936 5.936 19 Si 0.964 3.036 20 H -0.284 1.284 21 H -0.299 1.299 22 H -0.268 1.268 23 C 0.101 3.899 24 C 0.054 3.946 25 O -0.382 6.382 26 C -0.141 4.141 27 C 0.512 3.488 28 O -0.576 6.576 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.416 0.584 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.066 0.934 43 H -0.007 1.007 44 H 0.250 0.750 45 H 0.012 0.988 46 H 0.070 0.930 47 H 0.118 0.882 48 H 0.061 0.939 49 H 0.108 0.892 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.140 -13.483 5.943 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.348 5.348 4 C -0.005 4.005 5 C -0.129 4.129 6 H 0.169 0.831 7 C 0.311 3.689 8 O -0.457 6.457 9 N -0.353 5.353 10 C 0.025 3.975 11 C 0.053 3.947 12 C -0.212 4.212 13 C 0.039 3.961 14 N -0.331 5.331 15 C -0.387 4.387 16 H 0.090 0.910 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.793 3.207 20 H -0.211 1.211 21 H -0.226 1.226 22 H -0.192 1.192 23 C -0.024 4.024 24 C -0.024 4.024 25 O -0.301 6.301 26 C -0.181 4.181 27 C 0.301 3.699 28 O -0.457 6.457 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.254 0.746 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.011 0.989 44 H 0.059 0.941 45 H 0.030 0.970 46 H 0.088 0.912 47 H 0.136 0.864 48 H 0.079 0.921 49 H 0.126 0.874 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.842 -14.243 5.694 22.781 hybrid contribution 1.466 0.799 0.168 1.678 sum -15.376 -13.444 5.862 21.249 Atomic orbital electron populations 1.22100 0.94612 1.03351 1.01984 1.21543 0.95268 0.80252 1.03718 1.48521 1.64721 1.14537 1.07069 1.22025 1.03704 0.87972 0.86762 1.22188 1.00414 0.96139 0.94166 0.83105 1.20525 0.83206 0.81587 0.83558 1.90727 1.53887 1.69243 1.31807 1.45763 1.40003 1.13249 1.36236 1.21031 0.91879 0.88961 0.95676 1.22179 0.85551 0.90673 0.96309 1.22126 1.01559 1.02669 0.94827 1.21085 0.97129 0.84676 0.93237 1.44252 1.03120 1.08532 1.77233 1.19497 0.84915 1.15686 1.18591 0.90979 1.25756 1.01110 1.01138 0.96476 1.70169 1.25026 1.41592 1.21379 0.85312 0.79541 0.78401 0.77483 1.21096 1.22583 1.19235 1.21827 0.86739 0.96120 0.97756 1.23091 1.00113 0.82596 0.96574 1.87814 1.32016 1.29194 1.81122 1.22384 1.04636 0.95710 0.95344 1.21185 0.75970 0.88620 0.84103 1.90708 1.55621 1.76560 1.22778 0.94099 0.91342 0.89781 0.88045 0.91285 0.87418 0.90430 0.74610 0.90929 0.92441 0.92779 0.92245 0.90014 0.91582 0.98910 0.94087 0.96987 0.91188 0.86409 0.92123 0.87354 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 10.24 71.98 0.74 -1.05 16 2 C 0.11 1.52 6.65 86.38 0.57 2.09 16 3 N -0.62 -10.15 2.93 -817.98 -2.40 -12.54 16 4 C 0.12 1.68 6.66 86.83 0.58 2.26 16 5 C -0.11 -1.46 3.54 -10.48 -0.04 -1.50 16 6 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 7 C 0.52 11.46 7.07 87.66 0.62 12.08 16 8 O -0.58 -17.55 15.57 -3.02 -0.05 -17.60 16 9 N -0.70 -15.51 5.10 -463.05 -2.36 -17.87 16 10 C 0.15 4.59 4.82 86.38 0.42 5.01 16 11 C 0.09 3.18 0.76 -10.69 -0.01 3.17 16 12 C -0.15 -4.62 7.92 71.98 0.57 -4.05 16 13 C 0.17 7.62 4.12 86.35 0.36 7.98 16 14 N -0.61 -28.84 2.57 -697.54 -1.79 -30.63 16 15 C -0.26 -13.42 9.65 84.03 0.81 -12.61 16 16 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 17 C -0.05 -2.66 4.95 84.86 0.42 -2.24 16 18 N -0.94 -54.18 11.14 21.65 0.24 -53.94 16 19 Si 0.96 43.60 29.59 68.60 2.03 45.63 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C 0.10 3.88 6.73 86.35 0.58 4.47 16 24 C 0.05 1.58 6.60 72.08 0.48 2.05 16 25 O -0.38 -12.13 9.97 -148.98 -1.49 -13.62 16 26 C -0.14 -2.03 6.36 30.59 0.19 -1.84 16 27 C 0.51 10.69 8.02 87.90 0.71 11.40 16 28 O -0.58 -16.90 17.59 -3.03 -0.05 -16.95 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 1.12 7.92 -2.39 -0.02 1.10 16 34 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.08 1.41 7.06 -2.39 -0.02 1.39 16 36 H 0.42 7.15 7.20 -92.71 -0.67 6.49 16 37 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 1.98 6.12 -2.38 -0.01 1.97 16 41 H 0.08 1.80 6.87 -2.39 -0.02 1.78 16 42 H 0.07 3.44 6.14 -2.39 -0.01 3.42 16 43 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 44 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 46 H 0.07 2.53 7.96 -2.39 -0.02 2.51 16 47 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.06 1.69 6.25 -2.39 -0.01 1.67 16 49 H 0.11 1.68 7.89 -2.39 -0.02 1.66 16 50 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.49 395.32 1.40 -72.09 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.27 Total: 18.22 kcal Atomic # 6 Polarization: 20.22 SS G_CDS: 6.99 Total: 27.22 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -6.31 Total: -114.99 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -1.59 Total: -48.17 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -73.49 1.40 -72.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107982967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.237 kcal (2) G-P(sol) polarization free energy of solvation -73.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds