Wall clock time and date at job start Sat Apr 11 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99931 * 2 1 4 4 C 1.53005 * 109.47587 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46637 * 305.00432 * 4 3 2 6 6 C 1.52994 * 109.46657 * 64.99996 * 4 3 2 7 7 C 1.50696 * 109.47144 * 185.00143 * 4 3 2 8 8 O 1.21277 * 120.00341 * 359.97438 * 7 4 3 9 9 N 1.34776 * 119.99927 * 180.02562 * 7 4 3 10 10 C 1.46502 * 120.00317 * 179.97438 * 9 7 4 11 11 H 1.09000 * 110.66706 * 36.93093 * 10 9 7 12 12 C 1.54830 * 110.61293 * 159.88260 * 10 9 7 13 13 C 1.55843 * 103.51844 * 118.51031 * 12 10 9 14 14 H 1.09000 * 116.14839 * 159.22722 * 13 12 10 15 15 C 1.57333 * 105.76226 * 288.79706 * 13 12 10 16 16 C 1.54832 * 103.38385 * 71.10819 * 15 13 12 17 17 C 1.55846 * 110.61246 * 273.98391 * 10 9 7 18 18 H 1.09000 * 115.58472 * 82.59957 * 17 10 9 19 19 N 1.50643 * 101.02851 * 32.99322 * 13 12 10 20 20 C 1.46900 * 110.99939 * 189.76191 * 19 13 12 21 21 C 1.50695 * 109.47322 * 278.09166 * 20 19 13 22 22 O 1.21299 * 119.99917 * 359.97438 * 21 20 19 23 23 N 1.34778 * 120.00225 * 180.02562 * 21 20 19 24 24 C 1.37103 * 119.99945 * 179.97438 * 23 21 20 25 25 H 1.07999 * 120.00153 * 0.27888 * 24 23 21 26 26 C 1.38956 * 119.99543 * 179.97438 * 24 23 21 27 27 N 1.31404 * 120.00461 * 0.02562 * 26 24 23 28 28 Si 1.86801 * 119.99509 * 180.02562 * 26 24 23 29 29 H 1.48499 * 109.46967 * 90.00551 * 28 26 24 30 30 H 1.48499 * 109.47239 * 210.00151 * 28 26 24 31 31 H 1.48499 * 109.47667 * 330.00534 * 28 26 24 32 32 H 1.09000 * 109.47047 * 60.00120 * 1 2 3 33 33 H 1.09003 * 109.46584 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47290 * 300.00173 * 1 2 3 35 35 H 1.09002 * 109.47068 * 59.99883 * 3 2 1 36 36 H 1.09002 * 109.47385 * 299.99780 * 3 2 1 37 37 H 1.09000 * 109.47364 * 179.97438 * 6 4 3 38 38 H 1.09003 * 109.47592 * 300.00348 * 6 4 3 39 39 H 1.08997 * 109.47540 * 60.00397 * 6 4 3 40 40 H 0.97003 * 119.99808 * 359.97438 * 9 7 4 41 41 H 1.09003 * 110.61248 * 359.97438 * 12 10 9 42 42 H 1.09004 * 110.74631 * 237.08014 * 12 10 9 43 43 H 1.09005 * 110.33701 * 312.80512 * 15 13 12 44 44 H 1.09003 * 111.15356 * 189.79919 * 15 13 12 45 45 H 1.09008 * 110.61353 * 241.89350 * 16 15 13 46 46 H 1.09001 * 110.74878 * 118.97735 * 16 15 13 47 47 H 1.09005 * 109.47172 * 158.08926 * 20 19 13 48 48 H 1.09002 * 109.47372 * 38.09495 * 20 19 13 49 49 H 0.96999 * 120.00084 * 359.97438 * 23 21 20 50 50 H 0.97001 * 120.00446 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.8507 0.5687 0.8426 6 6 3.9962 0.5366 -1.3064 7 6 4.1478 2.5562 0.1245 8 8 3.4346 3.5339 0.2039 9 7 5.4881 2.6963 0.1460 10 6 6.0835 4.0295 0.2658 11 1 5.4907 4.6571 0.9313 12 6 7.5448 3.9307 0.7677 13 6 8.3730 4.5505 -0.3979 14 1 9.3705 4.9074 -0.1416 15 6 8.3086 3.5043 -1.5713 16 6 6.8433 3.6053 -2.0613 17 6 6.2239 4.6957 -1.1360 18 1 5.3266 5.1826 -1.5178 19 7 7.4135 5.5922 -0.9110 20 6 7.8873 6.1660 -2.1777 21 6 8.9085 7.2370 -1.8931 22 8 9.2115 7.4972 -0.7478 23 7 9.4844 7.9066 -2.9112 24 6 10.4131 8.8813 -2.6523 25 1 10.6865 9.1096 -1.6327 26 6 11.0073 9.5712 -3.7021 27 7 10.6787 9.2897 -4.9428 28 14 12.2731 10.8988 -3.3493 29 1 13.6281 10.2925 -3.3086 30 1 12.2231 11.9274 -4.4193 31 1 11.9747 11.5321 -2.0396 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.6885 1.8464 0.8900 36 1 1.6886 1.8464 -0.8900 37 1 5.0828 0.4510 -1.3062 38 1 3.5532 -0.4553 -1.3960 39 1 3.6809 1.1527 -2.1484 40 1 6.0585 1.9143 0.0821 41 1 7.8261 2.8898 0.9278 42 1 7.6787 4.5078 1.6827 43 1 8.5201 2.5024 -1.1976 44 1 8.9999 3.7680 -2.3717 45 1 6.3285 2.6534 -1.9305 46 1 6.8057 3.9203 -3.1042 47 1 7.0456 6.6005 -2.7171 48 1 8.3418 5.3825 -2.7840 49 1 9.2419 7.6988 -3.8272 50 1 11.0932 9.7716 -5.6756 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109057677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:01 Heat of formation + Delta-G solvation = -89.191454 kcal Electronic energy + Delta-G solvation = -30317.794390 eV Core-core repulsion = 26152.850067 eV Total energy + Delta-G solvation = -4164.944323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25309 -39.77912 -38.12657 -37.73677 -34.73944 -34.02072 -33.78467 -31.34774 -30.83523 -30.16761 -28.89525 -27.71958 -26.45944 -26.07217 -24.26977 -23.44157 -22.07942 -20.65381 -20.02112 -19.48500 -18.91911 -17.87758 -17.72404 -16.57609 -16.32102 -16.28889 -16.22641 -15.67458 -15.33447 -15.22290 -15.00087 -14.45151 -14.25309 -13.97911 -13.78257 -13.51358 -13.24414 -12.98221 -12.82171 -12.58815 -12.50295 -12.25141 -11.97793 -11.88245 -11.80290 -11.69197 -11.66610 -11.41352 -11.27402 -11.19349 -11.02436 -10.91263 -10.75592 -10.37154 -10.22722 -10.18376 -10.04537 -9.95103 -9.45898 -9.18141 -8.53560 -8.03822 -7.91693 -6.38008 -3.78564 2.39301 2.71700 3.19823 3.28149 3.34353 3.53733 3.93921 4.01050 4.23369 4.29596 4.45906 4.53289 4.55932 4.65973 4.78651 4.89803 4.96900 4.97975 5.03421 5.14617 5.20255 5.23419 5.26218 5.27830 5.28594 5.30083 5.32815 5.39309 5.41133 5.55158 5.63723 5.69499 5.76449 5.83356 5.86880 5.97868 5.99372 6.04728 6.15787 6.29987 6.35153 6.35975 6.73565 6.86602 7.19586 7.26314 7.58455 7.99037 8.10486 8.66667 9.22509 9.59519 10.12083 10.79951 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030186 B = 0.002024 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.349754 B =13832.525413 C =13998.425649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.394 6.394 3 C 0.079 3.921 4 C -0.110 4.110 5 H 0.105 0.895 6 C -0.141 4.141 7 C 0.521 3.479 8 O -0.536 6.536 9 N -0.715 5.715 10 C 0.150 3.850 11 H 0.099 0.901 12 C -0.116 4.116 13 C 0.057 3.943 14 H 0.122 0.878 15 C -0.158 4.158 16 C -0.153 4.153 17 C 0.036 3.964 18 H 0.113 0.887 19 N -0.463 5.463 20 C 0.025 3.975 21 C 0.448 3.552 22 O -0.577 6.577 23 N -0.568 5.568 24 C -0.297 4.297 25 H 0.102 0.898 26 C 0.021 3.979 27 N -0.904 5.904 28 Si 0.929 3.071 29 H -0.279 1.279 30 H -0.284 1.284 31 H -0.270 1.270 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.399 0.601 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.061 0.939 49 H 0.391 0.609 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.467 -21.864 6.187 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.313 6.313 3 C 0.003 3.997 4 C -0.131 4.131 5 H 0.123 0.877 6 C -0.198 4.198 7 C 0.306 3.694 8 O -0.412 6.412 9 N -0.367 5.367 10 C 0.046 3.954 11 H 0.117 0.883 12 C -0.154 4.154 13 C -0.052 4.052 14 H 0.140 0.860 15 C -0.197 4.197 16 C -0.192 4.192 17 C -0.074 4.074 18 H 0.131 0.869 19 N -0.186 5.186 20 C -0.107 4.107 21 C 0.233 3.767 22 O -0.460 6.460 23 N -0.205 5.205 24 C -0.426 4.426 25 H 0.120 0.880 26 C -0.180 4.180 27 N -0.545 5.545 28 Si 0.756 3.244 29 H -0.205 1.205 30 H -0.210 1.210 31 H -0.194 1.194 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.234 0.766 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.079 0.921 49 H 0.224 0.776 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.692 -20.500 7.236 26.239 hybrid contribution 0.745 -0.229 -1.331 1.543 sum -13.947 -20.729 5.905 25.672 Atomic orbital electron populations 1.22732 0.80624 1.02703 1.00264 1.87788 1.19975 1.27934 1.95566 1.22227 0.91481 0.84201 1.01837 1.21180 0.95422 0.94744 1.01783 0.87683 1.21737 1.01190 1.01755 0.95132 1.20370 0.82498 0.90670 0.75833 1.90736 1.60889 1.40647 1.48974 1.46107 1.06443 1.09607 1.74531 1.21885 0.94225 0.82673 0.96664 0.88251 1.22835 0.92891 1.00594 0.99103 1.24729 0.97593 0.89402 0.93442 0.86026 1.23592 0.96570 0.99977 0.99569 1.23235 0.95811 1.00108 1.00015 1.24808 0.95708 0.92049 0.94824 0.86940 1.67347 1.02946 1.24424 1.23855 1.22122 0.99017 0.97652 0.91897 1.19737 0.85336 0.85553 0.86098 1.90515 1.65555 1.68910 1.21014 1.41864 1.37416 1.33526 1.07709 1.19691 1.15982 1.12038 0.94918 0.87983 1.25241 0.98979 0.99121 0.94685 1.69610 1.43916 1.42612 0.98391 0.85873 0.80283 0.80078 0.78142 1.20503 1.20973 1.19445 0.93935 0.89561 0.93945 0.92244 0.92372 0.92109 0.90598 0.92045 0.76551 0.90941 0.89664 0.91412 0.90964 0.91131 0.91446 0.89698 0.92070 0.77604 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.41 10.24 -35.23 -0.36 -3.77 16 3 C 0.08 0.70 4.67 37.16 0.17 0.87 16 4 C -0.11 -0.85 2.96 -91.77 -0.27 -1.12 16 5 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 6 C -0.14 -0.90 8.99 37.15 0.33 -0.56 16 7 C 0.52 5.32 7.15 -10.99 -0.08 5.24 16 8 O -0.54 -7.66 15.65 5.56 0.09 -7.57 16 9 N -0.72 -6.26 3.56 -51.41 -0.18 -6.44 16 10 C 0.15 1.74 3.07 -65.45 -0.20 1.54 16 11 H 0.10 1.36 7.70 -51.93 -0.40 0.96 16 12 C -0.12 -1.28 6.22 -24.25 -0.15 -1.43 16 13 C 0.06 0.80 4.61 -61.73 -0.28 0.52 16 14 H 0.12 2.00 7.96 -51.93 -0.41 1.59 16 15 C -0.16 -1.81 5.69 -23.41 -0.13 -1.94 16 16 C -0.15 -1.68 5.53 -24.25 -0.13 -1.81 16 17 C 0.04 0.48 4.76 -62.56 -0.30 0.18 16 18 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 19 N -0.46 -7.65 5.09 -206.07 -1.05 -8.70 16 20 C 0.03 0.45 4.80 -4.98 -0.02 0.43 16 21 C 0.45 10.68 7.72 -10.99 -0.08 10.59 16 22 O -0.58 -15.75 15.58 5.54 0.09 -15.67 16 23 N -0.57 -14.54 5.29 -10.96 -0.06 -14.60 16 24 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 25 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 26 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 27 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 28 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 31 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.56 7.96 -51.93 -0.41 0.15 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.30 7.56 -51.93 -0.39 -0.09 16 38 H 0.08 0.48 7.82 -51.93 -0.41 0.07 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.40 2.47 7.46 -40.82 -0.30 2.16 16 41 H 0.07 0.60 7.42 -51.93 -0.39 0.21 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 44 H 0.07 0.92 6.91 -51.93 -0.36 0.56 16 45 H 0.07 0.64 6.56 -51.92 -0.34 0.30 16 46 H 0.07 0.77 7.63 -51.93 -0.40 0.38 16 47 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 48 H 0.06 1.00 5.02 -51.93 -0.26 0.74 16 49 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 50 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -33.65 396.15 -8.20 -41.86 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -8.12 Total: 10.96 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.28 Total: 5.80 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.57 Total: -53.81 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.19 Total: -27.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.65 -8.20 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109057677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.336 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds