Wall clock time and date at job start Sat Apr 11 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99931 * 2 1 4 4 C 1.53005 * 109.47587 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46637 * 305.00432 * 4 3 2 6 6 C 1.52994 * 109.46657 * 64.99996 * 4 3 2 7 7 C 1.50696 * 109.47144 * 185.00143 * 4 3 2 8 8 O 1.21277 * 120.00341 * 359.97438 * 7 4 3 9 9 N 1.34776 * 119.99927 * 180.02562 * 7 4 3 10 10 C 1.46502 * 120.00317 * 179.97438 * 9 7 4 11 11 H 1.09000 * 110.66706 * 36.93093 * 10 9 7 12 12 C 1.54830 * 110.61293 * 159.88260 * 10 9 7 13 13 C 1.55843 * 103.51844 * 118.51031 * 12 10 9 14 14 H 1.09000 * 116.14839 * 159.22722 * 13 12 10 15 15 C 1.57333 * 105.76226 * 288.79706 * 13 12 10 16 16 C 1.54832 * 103.38385 * 71.10819 * 15 13 12 17 17 C 1.55846 * 110.61246 * 273.98391 * 10 9 7 18 18 H 1.09000 * 115.58472 * 82.59957 * 17 10 9 19 19 N 1.50643 * 101.02851 * 32.99322 * 13 12 10 20 20 C 1.46900 * 110.99939 * 189.76191 * 19 13 12 21 21 C 1.50695 * 109.47322 * 278.09166 * 20 19 13 22 22 O 1.21299 * 119.99917 * 359.97438 * 21 20 19 23 23 N 1.34778 * 120.00225 * 180.02562 * 21 20 19 24 24 C 1.37103 * 119.99945 * 179.97438 * 23 21 20 25 25 H 1.07999 * 120.00153 * 0.27888 * 24 23 21 26 26 C 1.38956 * 119.99543 * 179.97438 * 24 23 21 27 27 N 1.31404 * 120.00461 * 0.02562 * 26 24 23 28 28 Si 1.86801 * 119.99509 * 180.02562 * 26 24 23 29 29 H 1.48499 * 109.46967 * 90.00551 * 28 26 24 30 30 H 1.48499 * 109.47239 * 210.00151 * 28 26 24 31 31 H 1.48499 * 109.47667 * 330.00534 * 28 26 24 32 32 H 1.09000 * 109.47047 * 60.00120 * 1 2 3 33 33 H 1.09003 * 109.46584 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47290 * 300.00173 * 1 2 3 35 35 H 1.09002 * 109.47068 * 59.99883 * 3 2 1 36 36 H 1.09002 * 109.47385 * 299.99780 * 3 2 1 37 37 H 1.09000 * 109.47364 * 179.97438 * 6 4 3 38 38 H 1.09003 * 109.47592 * 300.00348 * 6 4 3 39 39 H 1.08997 * 109.47540 * 60.00397 * 6 4 3 40 40 H 0.97003 * 119.99808 * 359.97438 * 9 7 4 41 41 H 1.09003 * 110.61248 * 359.97438 * 12 10 9 42 42 H 1.09004 * 110.74631 * 237.08014 * 12 10 9 43 43 H 1.09005 * 110.33701 * 312.80512 * 15 13 12 44 44 H 1.09003 * 111.15356 * 189.79919 * 15 13 12 45 45 H 1.09008 * 110.61353 * 241.89350 * 16 15 13 46 46 H 1.09001 * 110.74878 * 118.97735 * 16 15 13 47 47 H 1.09005 * 109.47172 * 158.08926 * 20 19 13 48 48 H 1.09002 * 109.47372 * 38.09495 * 20 19 13 49 49 H 0.96999 * 120.00084 * 359.97438 * 23 21 20 50 50 H 0.97001 * 120.00446 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.8507 0.5687 0.8426 6 6 3.9962 0.5366 -1.3064 7 6 4.1478 2.5562 0.1245 8 8 3.4346 3.5339 0.2039 9 7 5.4881 2.6963 0.1460 10 6 6.0835 4.0295 0.2658 11 1 5.4907 4.6571 0.9313 12 6 7.5448 3.9307 0.7677 13 6 8.3730 4.5505 -0.3979 14 1 9.3705 4.9074 -0.1416 15 6 8.3086 3.5043 -1.5713 16 6 6.8433 3.6053 -2.0613 17 6 6.2239 4.6957 -1.1360 18 1 5.3266 5.1826 -1.5178 19 7 7.4135 5.5922 -0.9110 20 6 7.8873 6.1660 -2.1777 21 6 8.9085 7.2370 -1.8931 22 8 9.2115 7.4972 -0.7478 23 7 9.4844 7.9066 -2.9112 24 6 10.4131 8.8813 -2.6523 25 1 10.6865 9.1096 -1.6327 26 6 11.0073 9.5712 -3.7021 27 7 10.6787 9.2897 -4.9428 28 14 12.2731 10.8988 -3.3493 29 1 13.6281 10.2925 -3.3086 30 1 12.2231 11.9274 -4.4193 31 1 11.9747 11.5321 -2.0396 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.6885 1.8464 0.8900 36 1 1.6886 1.8464 -0.8900 37 1 5.0828 0.4510 -1.3062 38 1 3.5532 -0.4553 -1.3960 39 1 3.6809 1.1527 -2.1484 40 1 6.0585 1.9143 0.0821 41 1 7.8261 2.8898 0.9278 42 1 7.6787 4.5078 1.6827 43 1 8.5201 2.5024 -1.1976 44 1 8.9999 3.7680 -2.3717 45 1 6.3285 2.6534 -1.9305 46 1 6.8057 3.9203 -3.1042 47 1 7.0456 6.6005 -2.7171 48 1 8.3418 5.3825 -2.7840 49 1 9.2419 7.6988 -3.8272 50 1 11.0932 9.7716 -5.6756 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109057677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:01 Heat of formation + Delta-G solvation = -115.085953 kcal Electronic energy + Delta-G solvation = -30318.917259 eV Core-core repulsion = 26152.850067 eV Total energy + Delta-G solvation = -4166.067192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.28495 -40.71439 -39.67666 -38.71370 -36.01636 -35.59861 -34.64008 -33.29034 -32.16660 -31.12807 -29.91741 -28.31932 -27.95055 -26.66787 -25.99237 -24.27447 -22.97564 -21.85563 -21.05709 -20.56826 -20.43176 -19.79665 -18.53027 -17.82585 -17.46887 -17.20509 -17.01050 -16.69029 -16.51417 -16.26506 -16.04411 -15.97724 -15.68023 -15.27350 -15.02387 -14.51689 -14.30328 -14.18856 -13.82800 -13.51312 -13.48896 -13.40672 -13.21468 -13.09740 -12.96589 -12.74497 -12.61190 -12.41994 -12.41171 -12.33785 -12.26520 -12.12511 -11.97697 -11.81741 -11.78375 -11.48587 -11.18718 -10.81084 -10.66223 -10.38433 -10.02196 -10.00333 -9.43448 -8.46228 -5.94879 1.37383 1.40659 1.53652 1.59250 1.93679 2.06825 2.28837 2.73924 3.01709 3.19951 3.31685 3.51072 3.59755 3.65580 3.87462 3.91577 4.01634 4.09747 4.22204 4.25642 4.28792 4.31130 4.35465 4.39300 4.48729 4.50675 4.51233 4.56748 4.66209 4.69053 4.70577 4.85972 4.88633 4.93278 4.98228 5.02342 5.03846 5.12741 5.18411 5.24792 5.35360 5.40627 5.45535 5.77625 5.85610 6.07885 6.14264 6.54089 6.61411 7.13623 7.24117 7.57342 8.13821 8.71331 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030186 B = 0.002024 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.349754 B =13832.525413 C =13998.425649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.080 3.920 4 C -0.101 4.101 5 H 0.126 0.874 6 C -0.137 4.137 7 C 0.521 3.479 8 O -0.582 6.582 9 N -0.697 5.697 10 C 0.161 3.839 11 H 0.073 0.927 12 C -0.103 4.103 13 C 0.044 3.956 14 H 0.090 0.910 15 C -0.148 4.148 16 C -0.142 4.142 17 C 0.034 3.966 18 H 0.098 0.902 19 N -0.498 5.498 20 C 0.042 3.958 21 C 0.444 3.556 22 O -0.616 6.616 23 N -0.576 5.576 24 C -0.332 4.332 25 H 0.078 0.922 26 C -0.014 4.014 27 N -0.921 5.921 28 Si 0.993 3.007 29 H -0.269 1.269 30 H -0.271 1.271 31 H -0.275 1.275 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.418 0.582 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.058 0.942 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.395 0.605 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 -24.506 5.763 28.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.003 3.997 4 C -0.122 4.122 5 H 0.144 0.856 6 C -0.194 4.194 7 C 0.309 3.691 8 O -0.461 6.461 9 N -0.350 5.350 10 C 0.055 3.945 11 H 0.092 0.908 12 C -0.141 4.141 13 C -0.064 4.064 14 H 0.108 0.892 15 C -0.186 4.186 16 C -0.181 4.181 17 C -0.075 4.075 18 H 0.117 0.883 19 N -0.221 5.221 20 C -0.090 4.090 21 C 0.232 3.768 22 O -0.502 6.502 23 N -0.214 5.214 24 C -0.462 4.462 25 H 0.096 0.904 26 C -0.213 4.213 27 N -0.563 5.563 28 Si 0.817 3.183 29 H -0.195 1.195 30 H -0.196 1.196 31 H -0.200 1.200 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.257 0.743 41 H 0.130 0.870 42 H 0.091 0.909 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.116 0.884 46 H 0.083 0.917 47 H 0.111 0.889 48 H 0.100 0.900 49 H 0.228 0.772 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.553 -23.198 6.790 28.214 hybrid contribution 0.631 0.593 -1.151 1.441 sum -13.922 -22.605 5.639 27.140 Atomic orbital electron populations 1.22924 0.79499 1.04005 1.00604 1.87762 1.21285 1.27576 1.95578 1.22164 0.92504 0.84258 1.00765 1.21151 0.94367 0.93199 1.03528 0.85642 1.21740 1.02626 1.01423 0.93644 1.20841 0.82502 0.91131 0.74644 1.90730 1.61981 1.42380 1.51010 1.45880 1.06261 1.09106 1.73751 1.21550 0.94257 0.83595 0.95126 0.90847 1.22768 0.91637 1.02430 0.97250 1.24709 0.96136 0.89720 0.95836 0.89226 1.23528 0.96403 1.00777 0.97913 1.23188 0.95384 1.00353 0.99147 1.24779 0.94047 0.92163 0.96548 0.88346 1.67293 1.04875 1.26824 1.23096 1.21914 0.97464 0.96355 0.93301 1.20773 0.85259 0.85720 0.85095 1.90478 1.66896 1.70203 1.22608 1.41933 1.37568 1.33656 1.08256 1.19650 1.18058 1.14124 0.94320 0.90433 1.26033 1.00334 1.00674 0.94303 1.69671 1.44428 1.43221 0.98933 0.84929 0.77985 0.77495 0.77922 1.19462 1.19554 1.19955 0.93609 0.87805 0.93654 0.93513 0.93425 0.89865 0.90218 0.93001 0.74347 0.86988 0.90860 0.87808 0.92294 0.88370 0.91672 0.88880 0.89982 0.77183 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -6.35 10.24 -148.98 -1.53 -7.88 16 3 C 0.08 1.34 4.67 71.98 0.34 1.67 16 4 C -0.10 -1.32 2.96 -11.54 -0.03 -1.35 16 5 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 6 C -0.14 -1.29 8.99 71.98 0.65 -0.65 16 7 C 0.52 9.74 7.15 87.66 0.63 10.37 16 8 O -0.58 -16.57 15.65 -3.02 -0.05 -16.61 16 9 N -0.70 -10.22 3.56 -434.95 -1.55 -11.76 16 10 C 0.16 3.51 3.07 46.60 0.14 3.65 16 11 H 0.07 2.03 7.70 -2.39 -0.02 2.01 16 12 C -0.10 -2.09 6.22 32.20 0.20 -1.89 16 13 C 0.04 1.22 4.61 46.69 0.22 1.44 16 14 H 0.09 3.05 7.96 -2.39 -0.02 3.03 16 15 C -0.15 -2.96 5.69 32.75 0.19 -2.78 16 16 C -0.14 -2.71 5.53 32.20 0.18 -2.53 16 17 C 0.03 0.87 4.76 46.15 0.22 1.09 16 18 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 19 N -0.50 -16.57 5.09 -805.87 -4.10 -20.67 16 20 C 0.04 1.51 4.80 85.56 0.41 1.93 16 21 C 0.44 21.95 7.72 87.66 0.68 22.63 16 22 O -0.62 -35.24 15.58 -3.09 -0.05 -35.29 16 23 N -0.58 -30.46 5.29 -306.97 -1.62 -32.08 16 24 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 25 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 26 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 27 N -0.92 -50.49 13.05 21.66 0.28 -50.21 16 28 Si 0.99 43.68 29.55 68.60 2.03 45.70 16 29 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 30 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 31 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.05 0.88 7.96 -2.39 -0.02 0.86 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.42 7.56 -2.39 -0.02 0.40 16 38 H 0.08 0.75 7.82 -2.39 -0.02 0.73 16 39 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.42 3.16 7.46 -92.71 -0.69 2.47 16 41 H 0.11 1.38 7.42 -2.39 -0.02 1.36 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.10 1.37 7.89 -2.38 -0.02 1.35 16 44 H 0.06 1.37 6.91 -2.39 -0.02 1.35 16 45 H 0.10 1.34 6.56 -2.38 -0.02 1.33 16 46 H 0.06 1.32 7.63 -2.39 -0.02 1.30 16 47 H 0.09 3.21 8.09 -2.38 -0.02 3.19 16 48 H 0.08 2.63 5.02 -2.39 -0.01 2.62 16 49 H 0.39 19.85 7.90 -92.71 -0.73 19.12 16 50 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -76.50 396.15 -0.71 -77.21 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: -0.46 Total: 35.24 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 6.33 Total: 16.36 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -6.99 Total: -114.73 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -1.62 Total: -59.78 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.50 -0.71 -77.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109057677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.876 kcal (2) G-P(sol) polarization free energy of solvation -76.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds