Wall clock time and date at job start Sat Apr 11 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00283 * 2 1 4 4 C 1.52988 * 109.47209 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47777 * 305.00180 * 4 3 2 6 6 C 1.53003 * 109.47376 * 65.00169 * 4 3 2 7 7 C 1.50707 * 109.47390 * 185.00311 * 4 3 2 8 8 O 1.21277 * 119.99356 * 359.97438 * 7 4 3 9 9 N 1.34772 * 120.00120 * 180.02562 * 7 4 3 10 10 C 1.46501 * 119.99992 * 179.97438 * 9 7 4 11 11 H 1.09000 * 110.54544 * 43.01559 * 10 9 7 12 12 C 1.54832 * 110.61414 * 280.15202 * 10 9 7 13 13 C 1.55846 * 103.51963 * 241.33626 * 12 10 9 14 14 H 1.08998 * 115.58021 * 159.64333 * 13 12 10 15 15 C 1.55846 * 105.03069 * 288.26944 * 13 12 10 16 16 C 1.54834 * 103.51991 * 71.72617 * 15 13 12 17 17 C 1.55846 * 110.61273 * 165.88093 * 10 9 7 18 18 H 1.09000 * 115.58510 * 319.01726 * 17 10 9 19 19 N 1.50648 * 101.02947 * 32.98756 * 13 12 10 20 20 C 1.46901 * 110.99706 * 62.34981 * 19 13 12 21 21 C 1.50701 * 109.47314 * 76.55936 * 20 19 13 22 22 O 1.21299 * 119.99590 * 359.97438 * 21 20 19 23 23 N 1.34776 * 120.00614 * 179.97438 * 21 20 19 24 24 C 1.37092 * 120.00478 * 179.97438 * 23 21 20 25 25 H 1.08003 * 120.00122 * 359.97438 * 24 23 21 26 26 C 1.38955 * 120.00110 * 180.02562 * 24 23 21 27 27 N 1.31417 * 119.99804 * 180.02562 * 26 24 23 28 28 Si 1.86794 * 119.99971 * 0.02562 * 26 24 23 29 29 H 1.48499 * 109.47514 * 89.99927 * 28 26 24 30 30 H 1.48501 * 109.47003 * 210.00137 * 28 26 24 31 31 H 1.48504 * 109.47234 * 330.00021 * 28 26 24 32 32 H 1.09001 * 109.46977 * 59.99343 * 1 2 3 33 33 H 1.08997 * 109.47292 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47301 * 300.00219 * 1 2 3 35 35 H 1.09004 * 109.46959 * 59.99951 * 3 2 1 36 36 H 1.09001 * 109.47081 * 300.00644 * 3 2 1 37 37 H 1.08996 * 109.47386 * 179.97438 * 6 4 3 38 38 H 1.08999 * 109.47258 * 300.00127 * 6 4 3 39 39 H 1.09005 * 109.46617 * 59.99850 * 6 4 3 40 40 H 0.97001 * 119.99940 * 359.97438 * 9 7 4 41 41 H 1.09002 * 110.61002 * 359.83807 * 12 10 9 42 42 H 1.08997 * 110.61577 * 122.66273 * 12 10 9 43 43 H 1.08998 * 110.61489 * 190.23925 * 15 13 12 44 44 H 1.09002 * 110.61086 * 313.21664 * 15 13 12 45 45 H 1.09001 * 110.60998 * 118.50673 * 16 15 13 46 46 H 1.08998 * 110.61571 * 241.33600 * 16 15 13 47 47 H 1.09001 * 109.47418 * 196.55340 * 20 19 13 48 48 H 1.09005 * 109.47504 * 316.55595 * 20 19 13 49 49 H 0.96999 * 119.99755 * 0.02562 * 23 21 20 50 50 H 0.96995 * 119.99735 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8508 0.5684 0.8427 6 6 3.9963 0.5364 -1.3064 7 6 4.1480 2.5559 0.1246 8 8 3.4348 3.5336 0.2040 9 7 5.4883 2.6959 0.1460 10 6 6.0838 4.0290 0.2659 11 1 5.5526 4.6195 1.0124 12 6 6.0819 4.7520 -1.1032 13 6 7.5948 4.9907 -1.3913 14 1 7.8526 5.1695 -2.4351 15 6 8.0257 6.1056 -0.3912 16 6 8.0275 5.3826 0.9780 17 6 7.5968 3.9238 0.6245 18 1 7.8544 3.1614 1.3596 19 7 8.2063 3.7739 -0.7472 20 6 7.7371 2.5426 -1.3967 21 6 8.4515 2.3645 -2.7116 22 8 9.2707 3.1831 -3.0723 23 7 8.1804 1.2958 -3.4866 24 6 8.8300 1.1341 -4.6830 25 1 9.5588 1.8634 -5.0047 26 6 8.5500 0.0325 -5.4823 27 7 9.1731 -0.1227 -6.6289 28 14 7.2880 -1.2277 -4.9270 29 1 5.9451 -0.8366 -5.4260 30 1 7.6486 -2.5619 -5.4702 31 1 7.2669 -1.2866 -3.4433 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.6887 1.8464 0.8900 36 1 1.6886 1.8464 -0.8899 37 1 5.0829 0.4507 -1.3062 38 1 3.5533 -0.4555 -1.3961 39 1 3.6809 1.1526 -2.1484 40 1 6.0586 1.9138 0.0821 41 1 5.6405 4.1174 -1.8717 42 1 5.5473 5.6995 -1.0361 43 1 9.0231 6.4730 -0.6325 44 1 7.3039 6.9224 -0.3929 45 1 9.0259 5.3916 1.4153 46 1 7.3087 5.8428 1.6559 47 1 7.9456 1.6892 -0.7515 48 1 6.6635 2.6110 -1.5729 49 1 7.5250 0.6414 -3.1983 50 1 8.9779 -0.8919 -7.1867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110380324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:17 Heat of formation + Delta-G solvation = -79.294671 kcal Electronic energy + Delta-G solvation = -31546.049152 eV Core-core repulsion = 27381.533986 eV Total energy + Delta-G solvation = -4164.515166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49239 -39.70877 -38.09483 -37.92322 -34.58244 -34.00175 -33.77221 -32.10309 -31.56694 -29.75434 -28.84083 -27.56258 -26.69767 -25.99322 -24.08643 -23.63533 -21.76949 -20.77534 -20.17229 -19.71256 -19.15181 -18.14420 -17.67012 -16.86519 -16.52570 -16.26530 -15.88634 -15.52936 -15.44108 -15.09608 -15.00350 -14.78974 -14.50170 -13.83865 -13.67231 -13.43477 -13.31876 -12.91613 -12.82001 -12.56588 -12.41499 -12.35020 -12.15110 -12.09651 -11.81415 -11.69952 -11.58086 -11.56829 -11.40767 -11.24726 -11.15069 -11.03332 -10.72678 -10.60646 -10.39987 -9.98629 -9.95559 -9.84869 -9.57355 -9.24482 -8.71755 -8.21807 -8.17348 -6.31715 -3.83121 2.40632 2.75177 2.99506 3.04559 3.13688 3.62576 3.69086 3.76469 4.08811 4.34805 4.42431 4.53019 4.59446 4.62280 4.72485 4.84903 4.99039 5.05324 5.05933 5.08231 5.12331 5.18968 5.22320 5.31914 5.34723 5.36905 5.37951 5.41509 5.44537 5.54827 5.58308 5.64179 5.69200 5.72507 5.88413 5.90665 5.96886 6.02431 6.10029 6.14088 6.31456 6.37067 6.71227 6.83030 7.01377 7.22915 7.57197 7.97658 8.13547 8.59444 8.94841 9.41524 9.82773 10.81534 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007198 B = 0.005031 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3888.989834 B = 5563.959151 C = 9020.350046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.081 3.919 4 C -0.111 4.111 5 H 0.106 0.894 6 C -0.147 4.147 7 C 0.522 3.478 8 O -0.539 6.539 9 N -0.722 5.722 10 C 0.113 3.887 11 H 0.093 0.907 12 C -0.163 4.163 13 C 0.058 3.942 14 H 0.125 0.875 15 C -0.116 4.116 16 C -0.108 4.108 17 C 0.035 3.965 18 H 0.119 0.881 19 N -0.460 5.460 20 C 0.006 3.994 21 C 0.456 3.544 22 O -0.557 6.557 23 N -0.592 5.592 24 C -0.304 4.304 25 H 0.119 0.881 26 C 0.042 3.958 27 N -0.882 5.882 28 Si 0.876 3.124 29 H -0.271 1.271 30 H -0.276 1.276 31 H -0.269 1.269 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.402 0.598 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.368 0.632 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.798 3.274 17.899 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C 0.004 3.996 4 C -0.132 4.132 5 H 0.124 0.876 6 C -0.204 4.204 7 C 0.309 3.691 8 O -0.416 6.416 9 N -0.376 5.376 10 C 0.008 3.992 11 H 0.111 0.889 12 C -0.203 4.203 13 C -0.050 4.050 14 H 0.142 0.858 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.075 4.075 18 H 0.137 0.863 19 N -0.182 5.182 20 C -0.126 4.126 21 C 0.241 3.759 22 O -0.438 6.438 23 N -0.232 5.232 24 C -0.433 4.433 25 H 0.137 0.863 26 C -0.161 4.161 27 N -0.522 5.522 28 Si 0.703 3.297 29 H -0.196 1.196 30 H -0.202 1.202 31 H -0.195 1.195 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.239 0.761 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.088 0.912 49 H 0.200 0.800 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.933 4.199 17.476 22.143 hybrid contribution -1.882 -1.481 0.179 2.401 sum -14.815 2.719 17.655 23.207 Atomic orbital electron populations 1.22729 0.80696 1.02736 1.00135 1.87811 1.19901 1.27805 1.95530 1.22202 0.91443 0.84283 1.01650 1.21197 0.95443 0.94535 1.02006 0.87564 1.21797 1.01547 1.02095 0.94977 1.20431 0.82398 0.90801 0.75505 1.90698 1.60950 1.40711 1.49260 1.46399 1.06651 1.09859 1.74670 1.22891 0.94862 0.83378 0.98107 0.88874 1.23759 0.98757 1.01399 0.96382 1.24487 0.89982 0.90733 0.99802 0.85756 1.22621 1.02063 0.96680 0.94049 1.22547 1.01827 0.92902 0.97356 1.24917 0.89693 0.98982 0.93880 0.86335 1.67533 1.49555 1.00806 1.00316 1.22476 0.99160 0.94349 0.96659 1.19555 0.86590 0.83906 0.85840 1.90564 1.35945 1.43776 1.73558 1.42189 1.38882 1.22239 1.19873 1.19416 1.21033 1.09550 0.93252 0.86297 1.25023 0.97844 0.97551 0.95680 1.69619 1.41536 1.29920 1.11095 0.86723 0.82122 0.82089 0.78785 1.19604 1.20152 1.19454 0.93946 0.89529 0.94063 0.92393 0.92393 0.91960 0.90229 0.91806 0.76086 0.90911 0.90294 0.90670 0.91390 0.90498 0.91297 0.89747 0.91238 0.79960 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.13 10.24 -35.23 -0.36 -4.49 16 3 C 0.08 0.85 4.67 37.15 0.17 1.03 16 4 C -0.11 -1.11 2.96 -91.77 -0.27 -1.38 16 5 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 6 C -0.15 -1.51 8.99 37.16 0.33 -1.18 16 7 C 0.52 6.17 7.08 -10.98 -0.08 6.09 16 8 O -0.54 -8.03 15.75 5.56 0.09 -7.95 16 9 N -0.72 -7.64 3.65 -51.41 -0.19 -7.82 16 10 C 0.11 1.26 2.43 -65.44 -0.16 1.11 16 11 H 0.09 1.06 7.56 -51.93 -0.39 0.66 16 12 C -0.16 -2.10 5.41 -24.25 -0.13 -2.23 16 13 C 0.06 0.84 4.39 -62.56 -0.27 0.56 16 14 H 0.12 2.15 7.55 -51.93 -0.39 1.76 16 15 C -0.12 -1.33 6.43 -24.25 -0.16 -1.48 16 16 C -0.11 -1.07 6.43 -24.07 -0.15 -1.22 16 17 C 0.03 0.38 4.65 -62.27 -0.29 0.09 16 18 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 19 N -0.46 -6.87 5.18 -206.65 -1.07 -7.94 16 20 C 0.01 0.09 3.89 -4.97 -0.02 0.07 16 21 C 0.46 10.07 7.65 -10.99 -0.08 9.99 16 22 O -0.56 -14.69 15.08 5.54 0.08 -14.60 16 23 N -0.59 -13.73 5.09 -10.96 -0.06 -13.79 16 24 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16 25 H 0.12 3.81 7.39 -52.48 -0.39 3.43 16 26 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 27 N -0.88 -25.61 13.96 55.50 0.77 -24.83 16 28 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 29 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 30 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 31 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.61 7.96 -51.93 -0.41 0.20 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.60 7.56 -51.93 -0.39 0.20 16 38 H 0.08 0.81 7.82 -51.93 -0.41 0.40 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.40 3.72 5.91 -40.82 -0.24 3.48 16 41 H 0.07 1.07 6.91 -51.93 -0.36 0.71 16 42 H 0.08 0.96 7.82 -51.93 -0.41 0.56 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.67 7.82 -51.93 -0.41 0.26 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.57 7.82 -51.93 -0.41 0.16 16 47 H 0.08 1.13 7.71 -51.93 -0.40 0.73 16 48 H 0.07 1.00 3.94 -51.93 -0.20 0.80 16 49 H 0.37 7.44 5.76 -40.82 -0.24 7.21 16 50 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 390.19 15.07 5.88 5.88 Total: -1.00 -34.19 390.19 -7.83 -42.01 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -8.02 Total: 13.96 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -0.25 Total: 5.21 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.54 Total: -54.38 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.19 Total: -27.04 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.19 -7.83 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110380324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.283 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds