Wall clock time and date at job start Sat Apr 11 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.47366 * 2 1 4 4 C 1.34775 * 120.00164 * 179.97438 * 3 2 1 5 5 O 1.21275 * 120.00074 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99674 * 179.97438 * 4 3 2 7 7 C 1.53005 * 109.47112 * 60.00700 * 6 4 3 8 8 C 1.53004 * 109.47757 * 300.00539 * 6 4 3 9 9 C 1.52999 * 109.47166 * 180.02562 * 6 4 3 10 10 N 1.46496 * 109.47545 * 180.02562 * 9 6 4 11 11 C 1.34776 * 120.00144 * 180.02562 * 10 9 6 12 12 O 1.21348 * 120.00107 * 359.97438 * 11 10 9 13 13 C 1.49451 * 120.00070 * 179.97438 * 11 10 9 14 14 O 1.21356 * 119.99659 * 355.04234 * 13 11 10 15 15 N 1.34772 * 120.00164 * 174.76323 * 13 11 10 16 16 C 1.46502 * 120.00041 * 186.04828 * 15 13 11 17 17 C 1.52998 * 109.46904 * 183.68273 * 16 15 13 18 18 C 1.50699 * 115.55367 * 306.40045 * 17 16 15 19 19 H 1.07993 * 120.00502 * 145.12178 * 18 17 16 20 20 C 1.37885 * 119.99986 * 325.11939 * 18 17 16 21 21 N 1.31519 * 119.99577 * 350.32469 * 20 18 17 22 22 Si 1.86787 * 120.00231 * 170.32704 * 20 18 17 23 23 H 1.48504 * 109.47075 * 59.99970 * 22 20 18 24 24 H 1.48500 * 109.47095 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47134 * 299.99893 * 22 20 18 26 26 C 1.53003 * 117.49804 * 160.73018 * 17 16 15 27 27 C 1.53007 * 117.49710 * 92.06902 * 17 16 15 28 28 H 1.09000 * 109.47242 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47388 * 300.00177 * 1 2 3 30 30 H 1.09009 * 109.47179 * 60.00162 * 1 2 3 31 31 H 1.09006 * 109.47296 * 240.00205 * 2 1 3 32 32 H 1.09000 * 109.47382 * 119.99996 * 2 1 3 33 33 H 0.97000 * 119.99310 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47304 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.46591 * 299.99626 * 7 6 4 36 36 H 1.09000 * 109.46850 * 59.99318 * 7 6 4 37 37 H 1.08999 * 109.46612 * 300.00014 * 8 6 4 38 38 H 1.09004 * 109.46741 * 59.99737 * 8 6 4 39 39 H 1.09000 * 109.47198 * 180.02562 * 8 6 4 40 40 H 1.08999 * 109.47168 * 60.00008 * 9 6 4 41 41 H 1.09009 * 109.47108 * 300.00201 * 9 6 4 42 42 H 0.97003 * 120.00104 * 359.97438 * 10 9 6 43 43 H 0.96996 * 120.00079 * 6.05621 * 15 13 11 44 44 H 1.08993 * 109.47110 * 303.68289 * 16 15 13 45 45 H 1.09001 * 109.46644 * 63.68530 * 16 15 13 46 46 H 0.97000 * 119.99952 * 185.03313 * 21 20 18 47 47 H 1.09000 * 117.49915 * 359.97438 * 26 17 16 48 48 H 1.08999 * 117.50272 * 145.02157 * 26 17 16 49 49 H 1.09001 * 117.49639 * 214.97598 * 27 17 16 50 50 H 1.08992 * 117.49881 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0483 -0.0001 7 6 3.3351 3.7703 1.2486 8 6 3.3362 3.7690 -1.2499 9 6 5.3757 3.0484 0.0001 10 7 5.8640 4.4296 0.0001 11 6 7.1891 4.6758 -0.0003 12 8 7.9777 3.7535 -0.0002 13 6 7.6873 6.0849 -0.0008 14 8 6.9023 7.0059 -0.0917 15 7 9.0077 6.3328 0.1053 16 6 9.4859 7.7112 0.2382 17 6 11.0158 7.7216 0.2478 18 6 11.6656 6.8199 1.2654 19 1 12.5956 6.3233 1.0312 20 6 11.0729 6.6288 2.4955 21 7 10.0497 7.3728 2.8551 22 14 11.7229 5.3133 3.6513 23 1 13.1431 5.5992 3.9780 24 1 10.9192 5.3104 4.9000 25 1 11.6237 3.9848 2.9951 26 6 11.7153 9.0440 -0.0733 27 6 11.7294 7.9028 -1.0935 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3880 2.1185 0.0004 34 1 3.6988 4.7978 1.2485 35 1 2.2451 3.7702 1.2481 36 1 3.6981 3.2568 2.1390 37 1 3.7000 3.2547 -2.1394 38 1 2.2462 3.7689 -1.2503 39 1 3.6999 4.7965 -1.2505 40 1 5.7391 2.5342 -0.8897 41 1 5.7390 2.5349 0.8904 42 1 5.2337 5.1669 -0.0003 43 1 9.6415 5.5987 0.0935 44 1 9.1237 8.3040 -0.6017 45 1 9.1138 8.1365 1.1703 46 1 9.6790 7.2891 3.7475 47 1 11.0855 9.9064 -0.2917 48 1 12.6457 9.2615 0.4513 49 1 12.6691 7.3701 -1.2396 50 1 11.1089 8.0141 -1.9827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261140382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:09 Heat of formation + Delta-G solvation = -93.875669 kcal Electronic energy + Delta-G solvation = -30001.872817 eV Core-core repulsion = 25836.725372 eV Total energy + Delta-G solvation = -4165.147446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76292 -39.85367 -38.07075 -36.67084 -36.60013 -35.65578 -33.63202 -32.79307 -32.17350 -30.67411 -27.75778 -27.45920 -26.31457 -25.47562 -24.40683 -23.01016 -21.87480 -21.22296 -19.90598 -19.69245 -19.36497 -18.10247 -17.00122 -16.54595 -16.22680 -16.02942 -16.00500 -15.54994 -14.97845 -14.86012 -14.64649 -14.63106 -14.21817 -14.02611 -13.86735 -13.58966 -13.27183 -13.01644 -12.95927 -12.65997 -12.59328 -12.47430 -12.29819 -12.16349 -11.94668 -11.78667 -11.51826 -11.42413 -11.27663 -11.09848 -10.97646 -10.81556 -10.51430 -10.28306 -10.00645 -9.64358 -9.46433 -9.18082 -9.06371 -8.95470 -8.85750 -8.31522 -8.00339 -6.09110 -4.18926 2.02506 2.32420 2.58957 3.05410 3.27653 3.33681 3.38190 3.85408 4.12854 4.24504 4.31867 4.35619 4.44652 4.53024 4.63459 4.72442 4.87280 4.90718 5.15765 5.24663 5.30401 5.34294 5.36674 5.42725 5.44664 5.48490 5.57062 5.60288 5.74006 5.84761 5.86209 5.97340 6.04531 6.26429 6.37583 6.49989 6.56940 6.66243 6.84332 7.01339 7.08165 7.21423 7.28074 7.43853 7.49854 7.87227 7.87684 8.06853 8.28495 8.39950 8.78682 8.82538 9.42878 10.87872 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.002418 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.466268 B =11578.178806 C =12367.961701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.730 5.730 4 C 0.528 3.472 5 O -0.530 6.530 6 C -0.095 4.095 7 C -0.145 4.145 8 C -0.144 4.144 9 C 0.143 3.857 10 N -0.708 5.708 11 C 0.508 3.492 12 O -0.516 6.516 13 C 0.496 3.504 14 O -0.550 6.550 15 N -0.649 5.649 16 C 0.158 3.842 17 C 0.034 3.966 18 C -0.498 4.498 19 H 0.063 0.937 20 C 0.075 3.925 21 N -0.873 5.873 22 Si 0.892 3.108 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.271 1.271 26 C -0.193 4.193 27 C -0.211 4.211 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.400 0.600 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.409 0.591 43 H 0.413 0.587 44 H 0.034 0.966 45 H 0.116 0.884 46 H 0.264 0.736 47 H 0.067 0.933 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.950 -8.628 -5.546 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.383 5.383 4 C 0.314 3.686 5 O -0.406 6.406 6 C -0.098 4.098 7 C -0.202 4.202 8 C -0.201 4.201 9 C 0.019 3.981 10 N -0.365 5.365 11 C 0.289 3.711 12 O -0.390 6.390 13 C 0.275 3.725 14 O -0.431 6.431 15 N -0.297 5.297 16 C 0.036 3.964 17 C 0.033 3.967 18 C -0.535 4.535 19 H 0.081 0.919 20 C -0.129 4.129 21 N -0.509 5.509 22 Si 0.719 3.281 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.196 1.196 26 C -0.232 4.232 27 C -0.248 4.248 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.235 0.765 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.246 0.754 43 H 0.250 0.750 44 H 0.052 0.948 45 H 0.133 0.867 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.095 0.905 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.492 -9.358 -5.438 23.175 hybrid contribution 0.043 -0.290 0.707 0.765 sum -20.449 -9.648 -4.731 23.101 Atomic orbital electron populations 1.22008 0.94367 1.03335 1.02559 1.21320 0.94245 0.82919 1.02589 1.46009 1.07059 1.08970 1.76281 1.20279 0.82253 0.90631 0.75481 1.90753 1.55207 1.46149 1.48472 1.20999 0.96711 0.93233 0.98877 1.21923 1.01162 1.01367 0.95776 1.21917 1.01185 1.01323 0.95714 1.21125 0.90145 0.82644 1.04216 1.45732 1.07050 1.08848 1.74822 1.20587 0.82786 0.90592 0.77157 1.90765 1.55174 1.46018 1.47074 1.19750 0.84355 0.88244 0.80169 1.90667 1.55568 1.45452 1.51384 1.45704 1.05412 1.11979 1.66610 1.21222 0.93676 0.79714 1.01770 1.19180 0.89948 0.95214 0.92324 1.20468 1.07916 1.26964 0.98146 0.91866 1.24973 0.94398 0.95630 0.97921 1.69807 1.23652 1.38124 1.19276 0.86635 0.78815 0.82646 0.79978 1.20195 1.21209 1.19629 1.22928 1.03128 0.92787 1.04338 1.22978 1.02840 1.05133 0.93880 0.90720 0.91914 0.91934 0.91403 0.91396 0.76482 0.90613 0.91726 0.91449 0.91512 0.91736 0.90633 0.90227 0.90219 0.75369 0.75010 0.94787 0.86691 0.92548 0.91427 0.90078 0.90452 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.03 37.15 0.37 -0.21 16 2 C 0.11 0.72 6.39 -4.04 -0.03 0.70 16 3 N -0.73 -5.02 5.34 -60.29 -0.32 -5.35 16 4 C 0.53 5.48 6.48 -10.99 -0.07 5.41 16 5 O -0.53 -7.84 15.98 5.56 0.09 -7.75 16 6 C -0.09 -0.86 0.63 -155.66 -0.10 -0.96 16 7 C -0.14 -1.11 8.20 37.16 0.30 -0.80 16 8 C -0.14 -1.03 8.20 37.16 0.30 -0.72 16 9 C 0.14 1.86 3.85 -4.04 -0.02 1.84 16 10 N -0.71 -10.09 4.95 -60.73 -0.30 -10.39 16 11 C 0.51 9.47 7.89 -11.58 -0.09 9.38 16 12 O -0.52 -10.95 16.49 5.50 0.09 -10.86 16 13 C 0.50 10.30 7.88 -11.59 -0.09 10.21 16 14 O -0.55 -11.88 16.48 5.49 0.09 -11.79 16 15 N -0.65 -14.43 5.27 -60.73 -0.32 -14.75 16 16 C 0.16 3.69 4.74 -4.04 -0.02 3.68 16 17 C 0.03 0.81 2.00 -155.66 -0.31 0.49 16 18 C -0.50 -12.83 8.28 -34.44 -0.29 -13.12 16 19 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 20 C 0.08 1.96 5.14 -17.81 -0.09 1.87 16 21 N -0.87 -23.29 10.71 55.43 0.59 -22.69 16 22 Si 0.89 20.81 29.55 -169.99 -5.02 15.79 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.19 -4.20 9.96 -26.69 -0.27 -4.46 16 27 C -0.21 -4.41 9.92 -26.68 -0.26 -4.68 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.19 8.14 -51.92 -0.42 -0.23 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.40 1.67 7.31 -40.82 -0.30 1.37 16 34 H 0.07 0.60 6.86 -51.93 -0.36 0.24 16 35 H 0.06 0.33 7.56 -51.93 -0.39 -0.07 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.30 7.57 -51.93 -0.39 -0.09 16 39 H 0.07 0.55 6.86 -51.93 -0.36 0.20 16 40 H 0.08 1.14 8.10 -51.93 -0.42 0.71 16 41 H 0.08 1.18 8.10 -51.92 -0.42 0.76 16 42 H 0.41 5.10 5.64 -40.82 -0.23 4.87 16 43 H 0.41 9.43 7.41 -40.82 -0.30 9.13 16 44 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 45 H 0.12 2.99 6.02 -51.93 -0.31 2.68 16 46 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 47 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 49 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 50 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 410.88 15.07 6.19 6.19 Total: -1.00 -31.54 410.88 -7.66 -39.20 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -8.10 Total: 13.78 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -0.65 Total: 8.62 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.35 Total: -53.18 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: 0.27 Total: -30.39 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.54 -7.66 -39.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261140382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.679 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds