Wall clock time and date at job start Sat Apr 11 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.47366 * 2 1 4 4 C 1.34775 * 120.00164 * 179.97438 * 3 2 1 5 5 O 1.21275 * 120.00074 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99674 * 179.97438 * 4 3 2 7 7 C 1.53005 * 109.47112 * 60.00700 * 6 4 3 8 8 C 1.53004 * 109.47757 * 300.00539 * 6 4 3 9 9 C 1.52999 * 109.47166 * 180.02562 * 6 4 3 10 10 N 1.46496 * 109.47545 * 180.02562 * 9 6 4 11 11 C 1.34776 * 120.00144 * 180.02562 * 10 9 6 12 12 O 1.21348 * 120.00107 * 359.97438 * 11 10 9 13 13 C 1.49451 * 120.00070 * 179.97438 * 11 10 9 14 14 O 1.21356 * 119.99659 * 355.04234 * 13 11 10 15 15 N 1.34772 * 120.00164 * 174.76323 * 13 11 10 16 16 C 1.46502 * 120.00041 * 186.04828 * 15 13 11 17 17 C 1.52998 * 109.46904 * 183.68273 * 16 15 13 18 18 C 1.50699 * 115.55367 * 306.40045 * 17 16 15 19 19 H 1.07993 * 120.00502 * 145.12178 * 18 17 16 20 20 C 1.37885 * 119.99986 * 325.11939 * 18 17 16 21 21 N 1.31519 * 119.99577 * 350.32469 * 20 18 17 22 22 Si 1.86787 * 120.00231 * 170.32704 * 20 18 17 23 23 H 1.48504 * 109.47075 * 59.99970 * 22 20 18 24 24 H 1.48500 * 109.47095 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47134 * 299.99893 * 22 20 18 26 26 C 1.53003 * 117.49804 * 160.73018 * 17 16 15 27 27 C 1.53007 * 117.49710 * 92.06902 * 17 16 15 28 28 H 1.09000 * 109.47242 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47388 * 300.00177 * 1 2 3 30 30 H 1.09009 * 109.47179 * 60.00162 * 1 2 3 31 31 H 1.09006 * 109.47296 * 240.00205 * 2 1 3 32 32 H 1.09000 * 109.47382 * 119.99996 * 2 1 3 33 33 H 0.97000 * 119.99310 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47304 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.46591 * 299.99626 * 7 6 4 36 36 H 1.09000 * 109.46850 * 59.99318 * 7 6 4 37 37 H 1.08999 * 109.46612 * 300.00014 * 8 6 4 38 38 H 1.09004 * 109.46741 * 59.99737 * 8 6 4 39 39 H 1.09000 * 109.47198 * 180.02562 * 8 6 4 40 40 H 1.08999 * 109.47168 * 60.00008 * 9 6 4 41 41 H 1.09009 * 109.47108 * 300.00201 * 9 6 4 42 42 H 0.97003 * 120.00104 * 359.97438 * 10 9 6 43 43 H 0.96996 * 120.00079 * 6.05621 * 15 13 11 44 44 H 1.08993 * 109.47110 * 303.68289 * 16 15 13 45 45 H 1.09001 * 109.46644 * 63.68530 * 16 15 13 46 46 H 0.97000 * 119.99952 * 185.03313 * 21 20 18 47 47 H 1.09000 * 117.49915 * 359.97438 * 26 17 16 48 48 H 1.08999 * 117.50272 * 145.02157 * 26 17 16 49 49 H 1.09001 * 117.49639 * 214.97598 * 27 17 16 50 50 H 1.08992 * 117.49881 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0483 -0.0001 7 6 3.3351 3.7703 1.2486 8 6 3.3362 3.7690 -1.2499 9 6 5.3757 3.0484 0.0001 10 7 5.8640 4.4296 0.0001 11 6 7.1891 4.6758 -0.0003 12 8 7.9777 3.7535 -0.0002 13 6 7.6873 6.0849 -0.0008 14 8 6.9023 7.0059 -0.0917 15 7 9.0077 6.3328 0.1053 16 6 9.4859 7.7112 0.2382 17 6 11.0158 7.7216 0.2478 18 6 11.6656 6.8199 1.2654 19 1 12.5956 6.3233 1.0312 20 6 11.0729 6.6288 2.4955 21 7 10.0497 7.3728 2.8551 22 14 11.7229 5.3133 3.6513 23 1 13.1431 5.5992 3.9780 24 1 10.9192 5.3104 4.9000 25 1 11.6237 3.9848 2.9951 26 6 11.7153 9.0440 -0.0733 27 6 11.7294 7.9028 -1.0935 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3880 2.1185 0.0004 34 1 3.6988 4.7978 1.2485 35 1 2.2451 3.7702 1.2481 36 1 3.6981 3.2568 2.1390 37 1 3.7000 3.2547 -2.1394 38 1 2.2462 3.7689 -1.2503 39 1 3.6999 4.7965 -1.2505 40 1 5.7391 2.5342 -0.8897 41 1 5.7390 2.5349 0.8904 42 1 5.2337 5.1669 -0.0003 43 1 9.6415 5.5987 0.0935 44 1 9.1237 8.3040 -0.6017 45 1 9.1138 8.1365 1.1703 46 1 9.6790 7.2891 3.7475 47 1 11.0855 9.9064 -0.2917 48 1 12.6457 9.2615 0.4513 49 1 12.6691 7.3701 -1.2396 50 1 11.1089 8.0141 -1.9827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261140382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:09 Heat of formation + Delta-G solvation = -116.895644 kcal Electronic energy + Delta-G solvation = -30002.871038 eV Core-core repulsion = 25836.725372 eV Total energy + Delta-G solvation = -4166.145667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85872 -41.16737 -39.64917 -38.43419 -37.66267 -36.38330 -35.10553 -34.25198 -34.06977 -31.23161 -28.88245 -28.36019 -27.82670 -27.29962 -25.26383 -24.10294 -22.96209 -22.73773 -21.36982 -21.20637 -20.57301 -19.66008 -18.11641 -18.05216 -17.48680 -17.13954 -17.11826 -16.73281 -16.57744 -16.33272 -16.11939 -15.78286 -15.42928 -15.08546 -15.00909 -14.84501 -14.54150 -14.35604 -14.30528 -13.61889 -13.41877 -13.33718 -13.30734 -13.29128 -12.92266 -12.89601 -12.74249 -12.69616 -12.68684 -12.39049 -12.32849 -12.17118 -12.05655 -12.04944 -11.45156 -11.09033 -10.87634 -10.70518 -10.59423 -10.40520 -10.16194 -10.13863 -9.82042 -8.06341 -6.20187 0.42850 1.34140 1.39478 1.45116 1.49011 1.51320 2.13149 2.24995 2.38957 2.78748 3.04887 3.30409 3.55258 3.63767 3.68458 3.69197 3.94858 4.15319 4.22215 4.22826 4.47684 4.50695 4.51788 4.56516 4.66729 4.71325 4.76051 4.76863 4.79045 4.85031 4.93652 4.98022 5.06147 5.07073 5.08890 5.19403 5.22911 5.27540 5.27677 5.42494 5.47165 5.56675 5.59551 5.89799 5.99871 6.34991 6.46683 6.52815 6.77345 6.84587 7.09390 7.16386 7.42396 8.88115 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.002418 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.466268 B =11578.178806 C =12367.961701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.108 3.892 3 N -0.710 5.710 4 C 0.526 3.474 5 O -0.583 6.583 6 C -0.084 4.084 7 C -0.144 4.144 8 C -0.142 4.142 9 C 0.143 3.857 10 N -0.681 5.681 11 C 0.509 3.491 12 O -0.547 6.547 13 C 0.496 3.504 14 O -0.558 6.558 15 N -0.655 5.655 16 C 0.170 3.830 17 C 0.001 3.999 18 C -0.506 4.506 19 H 0.056 0.944 20 C 0.040 3.960 21 N -0.891 5.891 22 Si 0.938 3.062 23 H -0.271 1.271 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.188 4.188 27 C -0.189 4.189 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.417 0.583 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.421 0.579 43 H 0.409 0.591 44 H 0.042 0.958 45 H 0.087 0.913 46 H 0.261 0.739 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.081 0.919 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.222 -8.265 -6.251 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.015 4.015 3 N -0.363 5.363 4 C 0.312 3.688 5 O -0.463 6.463 6 C -0.088 4.088 7 C -0.202 4.202 8 C -0.200 4.200 9 C 0.019 3.981 10 N -0.337 5.337 11 C 0.290 3.710 12 O -0.424 6.424 13 C 0.276 3.724 14 O -0.439 6.439 15 N -0.303 5.303 16 C 0.048 3.952 17 C 0.000 4.000 18 C -0.543 4.543 19 H 0.074 0.926 20 C -0.162 4.162 21 N -0.528 5.528 22 Si 0.764 3.236 23 H -0.196 1.196 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.227 4.227 27 C -0.226 4.226 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.255 0.745 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.260 0.740 43 H 0.245 0.755 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.095 0.905 49 H 0.100 0.900 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.848 -8.958 -6.149 25.300 hybrid contribution 0.697 -0.413 0.890 1.204 sum -22.151 -9.370 -5.259 24.619 Atomic orbital electron populations 1.21957 0.91600 1.04214 1.03518 1.21410 0.96392 0.82261 1.01430 1.45894 1.06103 1.09995 1.74321 1.20474 0.83007 0.90406 0.74887 1.90738 1.56729 1.47608 1.51224 1.20916 0.93574 0.93270 1.01044 1.21970 1.03420 1.00677 0.94108 1.21962 1.03374 1.00718 0.93926 1.21156 0.93297 0.81103 1.02536 1.45594 1.05662 1.10007 1.72419 1.20262 0.83964 0.89237 0.77531 1.90756 1.56213 1.46335 1.49080 1.20066 0.83867 0.89132 0.79354 1.90649 1.55579 1.46032 1.51599 1.45693 1.05951 1.11461 1.67185 1.20946 0.93539 0.80214 1.00532 1.19259 0.90228 0.96547 0.93927 1.20654 1.07722 1.27201 0.98772 0.92596 1.25462 0.94789 0.96877 0.99060 1.69929 1.24490 1.39167 1.19220 0.85918 0.78556 0.80587 0.78510 1.19581 1.21332 1.20257 1.22932 1.02716 0.92783 1.04242 1.22982 1.02596 1.03719 0.93288 0.89966 0.90980 0.90837 0.92554 0.92764 0.74462 0.90586 0.88201 0.92794 0.92318 0.88310 0.90445 0.91596 0.92331 0.73978 0.75499 0.93991 0.89533 0.92971 0.89960 0.90521 0.90028 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 10.03 71.98 0.72 0.03 16 2 C 0.11 1.26 6.39 86.38 0.55 1.81 16 3 N -0.71 -8.36 5.34 -463.06 -2.47 -10.84 16 4 C 0.53 10.53 6.48 87.66 0.57 11.10 16 5 O -0.58 -17.77 15.98 -3.01 -0.05 -17.82 16 6 C -0.08 -1.44 0.63 -52.93 -0.03 -1.47 16 7 C -0.14 -1.89 8.20 71.98 0.59 -1.30 16 8 C -0.14 -1.67 8.20 71.98 0.59 -1.08 16 9 C 0.14 3.77 3.85 86.38 0.33 4.10 16 10 N -0.68 -19.20 4.95 -464.41 -2.30 -21.50 16 11 C 0.51 19.17 7.89 87.27 0.69 19.86 16 12 O -0.55 -23.75 16.49 -3.24 -0.05 -23.81 16 13 C 0.50 20.62 7.88 87.27 0.69 21.31 16 14 O -0.56 -23.75 16.48 -3.26 -0.05 -23.80 16 15 N -0.66 -29.36 5.27 -464.41 -2.45 -31.81 16 16 C 0.17 7.94 4.74 86.38 0.41 8.35 16 17 C 0.00 0.05 2.00 -52.93 -0.11 -0.06 16 18 C -0.51 -26.15 8.28 25.60 0.21 -25.94 16 19 H 0.06 2.90 7.83 -2.91 -0.02 2.88 16 20 C 0.04 2.10 5.14 84.66 0.44 2.54 16 21 N -0.89 -48.13 10.71 21.45 0.23 -47.90 16 22 Si 0.94 43.08 29.55 68.60 2.03 45.10 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 C -0.19 -7.93 9.96 30.62 0.30 -7.62 16 27 C -0.19 -7.56 9.92 30.62 0.30 -7.26 16 28 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.07 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.42 1.99 7.31 -92.71 -0.68 1.31 16 34 H 0.08 1.02 6.86 -2.39 -0.02 1.00 16 35 H 0.10 0.61 7.56 -2.39 -0.02 0.59 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 0.50 7.57 -2.39 -0.02 0.48 16 39 H 0.08 0.92 6.86 -2.39 -0.02 0.90 16 40 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 41 H 0.06 1.82 8.10 -2.38 -0.02 1.80 16 42 H 0.42 9.94 5.64 -92.71 -0.52 9.42 16 43 H 0.41 19.00 7.41 -92.71 -0.69 18.31 16 44 H 0.04 1.85 8.06 -2.39 -0.02 1.83 16 45 H 0.09 4.56 6.02 -2.39 -0.01 4.55 16 46 H 0.26 13.78 8.32 -92.71 -0.77 13.01 16 47 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 48 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 49 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 50 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -69.59 410.88 0.22 -69.36 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.92 Total: 38.62 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 6.26 Total: 24.38 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -6.99 Total: -112.03 kcal Atomic # 8 Polarization: -65.28 SS G_CDS: -0.16 Total: -65.43 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -69.59 0.22 -69.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261140382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.531 kcal (2) G-P(sol) polarization free energy of solvation -69.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds