Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46793 * 2 1 4 4 C 1.34775 * 119.99600 * 83.55565 * 3 2 1 5 5 O 1.21286 * 119.99843 * 175.46416 * 4 3 2 6 6 C 1.50693 * 120.00395 * 355.46771 * 4 3 2 7 7 H 1.08999 * 110.43531 * 325.01181 * 6 4 3 8 8 C 1.54811 * 110.49029 * 202.32288 * 6 4 3 9 9 C 1.55001 * 102.09272 * 220.44153 * 8 6 4 10 10 O 1.44378 * 103.48846 * 37.02264 * 9 8 6 11 11 C 1.43742 * 106.97824 * 319.93824 * 10 9 8 12 12 C 1.46499 * 119.99998 * 263.54754 * 3 2 1 13 13 H 1.09004 * 110.28586 * 183.83639 * 12 3 2 14 14 C 1.54255 * 110.32799 * 305.96839 * 12 3 2 15 15 C 1.54378 * 105.06056 * 118.89471 * 14 12 3 16 16 N 1.48555 * 104.59425 * 23.85462 * 15 14 12 17 17 C 1.46899 * 111.00298 * 200.95680 * 16 15 14 18 18 C 1.50694 * 109.47513 * 175.00786 * 17 16 15 19 19 O 1.21295 * 119.99773 * 5.87627 * 18 17 16 20 20 N 1.34780 * 120.00509 * 185.87509 * 18 17 16 21 21 C 1.37093 * 120.00319 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99842 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99981 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99790 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99942 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46849 * 60.00121 * 25 23 21 27 27 H 1.48502 * 109.46856 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46924 * 299.99760 * 25 23 21 29 29 C 1.48561 * 104.22319 * 320.51352 * 16 15 14 30 30 H 1.09003 * 109.47217 * 183.14730 * 1 2 3 31 31 H 1.09004 * 109.46950 * 63.15109 * 1 2 3 32 32 H 1.08989 * 109.47282 * 303.14827 * 1 2 3 33 33 H 1.08994 * 109.47259 * 120.00037 * 2 1 3 34 34 H 1.08999 * 109.47387 * 240.00284 * 2 1 3 35 35 H 1.08999 * 110.90690 * 338.63522 * 8 6 4 36 36 H 1.09003 * 110.90786 * 102.24256 * 8 6 4 37 37 H 1.08997 * 110.61643 * 278.51950 * 9 8 6 38 38 H 1.08998 * 110.74850 * 155.58976 * 9 8 6 39 39 H 1.09000 * 109.88062 * 267.09492 * 11 10 9 40 40 H 1.09003 * 110.00481 * 146.00927 * 11 10 9 41 41 H 1.09001 * 110.32642 * 237.79310 * 14 12 3 42 42 H 1.08999 * 110.32369 * 359.90057 * 14 12 3 43 43 H 1.08999 * 110.41067 * 142.63164 * 15 14 12 44 44 H 1.08999 * 110.41090 * 264.95715 * 15 14 12 45 45 H 1.08991 * 109.47522 * 295.01233 * 17 16 15 46 46 H 1.09010 * 109.47001 * 55.01221 * 17 16 15 47 47 H 0.97002 * 119.99536 * 0.02562 * 20 18 17 48 48 H 0.97004 * 119.99666 * 179.97438 * 24 23 21 49 49 H 1.08994 * 110.41514 * 280.71036 * 29 16 15 50 50 H 1.09005 * 110.41003 * 158.25853 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1193 2.0602 1.1599 5 8 2.6002 3.1736 1.1709 6 6 1.6349 1.4361 2.4430 7 1 0.7536 0.8218 2.2585 8 6 1.3262 2.5294 3.4947 9 6 1.8781 1.8932 4.7960 10 8 3.0656 1.2006 4.3549 11 6 2.7527 0.5950 3.0894 12 6 2.3968 2.0244 -1.2607 13 1 2.7989 3.0197 -1.0714 14 6 3.4318 1.1623 -2.0124 15 6 2.7533 0.7961 -3.3498 16 7 1.7416 1.8632 -3.5608 17 6 0.6960 1.4205 -4.4928 18 6 -0.3734 2.4781 -4.5873 19 8 -0.2241 3.5433 -4.0267 20 7 -1.4957 2.2404 -5.2948 21 6 -2.4683 3.2028 -5.3811 22 1 -2.3353 4.1512 -4.8819 23 6 -3.6255 2.9575 -6.1101 24 7 -3.7875 1.8032 -6.7170 25 14 -4.9511 4.2685 -6.2271 26 1 -4.3849 5.4903 -6.8532 27 1 -6.0749 3.7634 -7.0561 28 1 -5.4469 4.5940 -4.8658 29 6 1.1799 2.1065 -2.2072 30 1 -0.3634 -1.0261 0.0564 31 1 -0.3633 0.4642 -0.9169 32 1 -0.3633 0.5619 0.8603 33 1 1.8933 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8531 3.4543 3.2603 36 1 0.2529 2.7033 3.5716 37 1 1.1576 1.1910 5.2154 38 1 2.1311 2.6630 5.5250 39 1 2.4059 -0.4269 3.2432 40 1 3.6341 0.5945 2.4482 41 1 4.3414 1.7350 -2.1936 42 1 3.6596 0.2615 -1.4425 43 1 3.4831 0.7986 -4.1595 44 1 2.2709 -0.1786 -3.2769 45 1 1.1328 1.2566 -5.4778 46 1 0.2566 0.4909 -4.1310 47 1 -1.6152 1.3884 -5.7428 48 1 -4.5955 1.6319 -7.2256 49 1 0.4496 1.3378 -1.9548 50 1 0.7250 3.0958 -2.1566 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269313517.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = -96.212809 kcal Electronic energy + Delta-G solvation = -30944.781821 eV Core-core repulsion = 26779.533030 eV Total energy + Delta-G solvation = -4165.248792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.00105 -39.51740 -38.48410 -37.48776 -35.74863 -33.94890 -32.79849 -31.71383 -31.20491 -30.31347 -29.70399 -28.32655 -26.60969 -24.48750 -24.07843 -23.25006 -22.62594 -21.20588 -20.57812 -19.18809 -19.04235 -17.97795 -17.75066 -16.97687 -16.65324 -16.11597 -15.99227 -15.44665 -15.27264 -14.80582 -14.63757 -14.49837 -14.23263 -14.14289 -13.99429 -13.56740 -13.39412 -13.20728 -12.91303 -12.68197 -12.41089 -12.34865 -12.16899 -11.88346 -11.81421 -11.73758 -11.56739 -11.49342 -11.37601 -11.29063 -11.20244 -11.06928 -10.92591 -10.54654 -10.45710 -10.23890 -10.19385 -9.76385 -9.50622 -8.82676 -8.48069 -8.07336 -7.96014 -6.44521 -3.85274 2.37852 2.71057 3.18065 3.23925 3.28492 3.54895 3.87110 4.02847 4.04738 4.21402 4.27762 4.52521 4.54981 4.67888 4.69921 4.74712 4.81838 4.89223 4.92706 5.06803 5.09154 5.10934 5.21461 5.22475 5.27186 5.29574 5.36371 5.41518 5.49798 5.51425 5.58191 5.65156 5.70518 5.80054 5.85681 5.88774 5.96835 6.04885 6.20668 6.25357 6.37322 6.45648 6.52381 7.09440 7.16988 7.22201 7.52567 8.00470 8.03119 8.58755 9.15361 9.50989 10.02954 10.73126 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.002628 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.030925 B =10653.466753 C =11585.932547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.101 3.899 3 N -0.603 5.603 4 C 0.526 3.474 5 O -0.529 6.529 6 C -0.151 4.151 7 H 0.109 0.891 8 C -0.144 4.144 9 C 0.048 3.952 10 O -0.373 6.373 11 C 0.065 3.935 12 C 0.134 3.866 13 H 0.111 0.889 14 C -0.132 4.132 15 C 0.029 3.971 16 N -0.483 5.483 17 C 0.036 3.964 18 C 0.441 3.559 19 O -0.577 6.577 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.023 3.977 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.051 0.949 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.693 -10.159 16.684 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.022 4.022 3 N -0.336 5.336 4 C 0.313 3.687 5 O -0.405 6.405 6 C -0.172 4.172 7 H 0.127 0.873 8 C -0.182 4.182 9 C -0.028 4.028 10 O -0.292 6.292 11 C -0.013 4.013 12 C 0.030 3.970 13 H 0.129 0.871 14 C -0.171 4.171 15 C -0.099 4.099 16 N -0.208 5.208 17 C -0.096 4.096 18 C 0.226 3.774 19 O -0.461 6.461 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.105 4.105 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.069 0.931 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.319 -8.439 16.799 21.944 hybrid contribution -1.599 -0.919 -0.461 1.901 sum 9.720 -9.357 16.338 21.189 Atomic orbital electron populations 1.22513 0.95410 1.02670 1.03561 1.21575 0.94878 0.82540 1.03171 1.48047 1.64988 1.13966 1.06593 1.20252 0.78201 0.85609 0.84629 1.90701 1.44188 1.19564 1.86054 1.22892 1.00741 0.99183 0.94427 0.87312 1.23190 1.02768 0.99400 0.92838 1.23594 0.87092 0.95585 0.96578 1.88893 1.34744 1.70292 1.35258 1.23007 0.97310 0.95526 0.85413 1.21961 0.94939 0.98007 0.82087 0.87116 1.22671 0.98863 0.99981 0.95574 1.23177 0.95820 0.93455 0.97468 1.65173 1.11708 1.36208 1.07677 1.22076 0.92922 0.96415 0.98155 1.19708 0.83777 0.89155 0.84726 1.90508 1.79409 1.26532 1.49652 1.41854 1.15695 1.17168 1.45264 1.19647 0.95827 0.97407 1.29972 0.87976 1.25254 0.98701 0.97444 0.96473 1.69604 1.28657 1.22672 1.33433 0.85928 0.79623 0.80351 0.78397 1.19843 1.20961 1.19917 1.23750 0.95119 1.04489 0.87151 0.91223 0.90908 0.92143 0.90685 0.89668 0.88222 0.89634 0.91977 0.88525 0.91350 0.89696 0.90185 0.90897 0.89931 0.94087 0.88977 0.93522 0.77517 0.91815 0.93081 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.71 37.16 0.36 -1.25 16 2 C 0.10 0.83 4.92 -4.04 -0.02 0.81 16 3 N -0.60 -6.88 2.43 -164.54 -0.40 -7.28 16 4 C 0.53 6.66 6.59 -10.99 -0.07 6.59 16 5 O -0.53 -8.84 14.95 5.55 0.08 -8.76 16 6 C -0.15 -1.40 2.47 -90.24 -0.22 -1.62 16 7 H 0.11 0.80 5.30 -51.93 -0.28 0.52 16 8 C -0.14 -1.33 6.64 -24.72 -0.16 -1.49 16 9 C 0.05 0.38 7.72 38.21 0.29 0.68 16 10 O -0.37 -3.96 11.52 -35.23 -0.41 -4.36 16 11 C 0.06 0.56 6.50 37.73 0.25 0.80 16 12 C 0.13 1.81 3.46 -66.55 -0.23 1.58 16 13 H 0.11 1.78 6.97 -51.93 -0.36 1.42 16 14 C -0.13 -1.45 6.10 -25.35 -0.15 -1.60 16 15 C 0.03 0.35 6.49 -2.19 -0.01 0.33 16 16 N -0.48 -7.91 5.21 -231.42 -1.21 -9.12 16 17 C 0.04 0.63 5.41 -4.98 -0.03 0.60 16 18 C 0.44 10.26 7.42 -10.99 -0.08 10.18 16 19 O -0.58 -15.45 13.88 5.54 0.08 -15.37 16 20 N -0.56 -14.07 5.29 -10.97 -0.06 -14.13 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 25 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 C 0.02 0.38 5.14 -2.18 -0.01 0.37 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.84 5.45 -51.93 -0.28 0.56 16 32 H 0.06 0.52 6.30 -51.94 -0.33 0.19 16 33 H 0.07 0.45 6.48 -51.93 -0.34 0.11 16 34 H 0.08 0.66 6.63 -51.93 -0.34 0.31 16 35 H 0.10 1.16 6.83 -51.93 -0.35 0.81 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.77 7.69 -51.93 -0.40 0.37 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.66 6.77 -51.93 -0.35 0.31 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.04 0.43 7.90 -51.93 -0.41 0.02 16 45 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.05 0.73 7.97 -51.92 -0.41 0.31 16 47 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.05 0.80 4.36 -51.93 -0.23 0.57 16 50 H 0.11 2.25 6.44 -51.93 -0.33 1.91 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -33.57 384.57 -8.39 -41.95 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.63 Total: 10.80 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.34 Total: 8.09 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.94 Total: -54.09 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.25 Total: -28.49 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.57 -8.39 -41.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269313517.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.261 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds