Wall clock time and date at job start Sat Apr 11 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46793 * 2 1 4 4 C 1.34775 * 119.99600 * 83.55565 * 3 2 1 5 5 O 1.21286 * 119.99843 * 175.46416 * 4 3 2 6 6 C 1.50693 * 120.00395 * 355.46771 * 4 3 2 7 7 H 1.08999 * 110.43531 * 325.01181 * 6 4 3 8 8 C 1.54811 * 110.49029 * 202.32288 * 6 4 3 9 9 C 1.55001 * 102.09272 * 220.44153 * 8 6 4 10 10 O 1.44378 * 103.48846 * 37.02264 * 9 8 6 11 11 C 1.43742 * 106.97824 * 319.93824 * 10 9 8 12 12 C 1.46499 * 119.99998 * 263.54754 * 3 2 1 13 13 H 1.09004 * 110.28586 * 183.83639 * 12 3 2 14 14 C 1.54255 * 110.32799 * 305.96839 * 12 3 2 15 15 C 1.54378 * 105.06056 * 118.89471 * 14 12 3 16 16 N 1.48555 * 104.59425 * 23.85462 * 15 14 12 17 17 C 1.46899 * 111.00298 * 200.95680 * 16 15 14 18 18 C 1.50694 * 109.47513 * 175.00786 * 17 16 15 19 19 O 1.21295 * 119.99773 * 5.87627 * 18 17 16 20 20 N 1.34780 * 120.00509 * 185.87509 * 18 17 16 21 21 C 1.37093 * 120.00319 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99842 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99981 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99790 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99942 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46849 * 60.00121 * 25 23 21 27 27 H 1.48502 * 109.46856 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46924 * 299.99760 * 25 23 21 29 29 C 1.48561 * 104.22319 * 320.51352 * 16 15 14 30 30 H 1.09003 * 109.47217 * 183.14730 * 1 2 3 31 31 H 1.09004 * 109.46950 * 63.15109 * 1 2 3 32 32 H 1.08989 * 109.47282 * 303.14827 * 1 2 3 33 33 H 1.08994 * 109.47259 * 120.00037 * 2 1 3 34 34 H 1.08999 * 109.47387 * 240.00284 * 2 1 3 35 35 H 1.08999 * 110.90690 * 338.63522 * 8 6 4 36 36 H 1.09003 * 110.90786 * 102.24256 * 8 6 4 37 37 H 1.08997 * 110.61643 * 278.51950 * 9 8 6 38 38 H 1.08998 * 110.74850 * 155.58976 * 9 8 6 39 39 H 1.09000 * 109.88062 * 267.09492 * 11 10 9 40 40 H 1.09003 * 110.00481 * 146.00927 * 11 10 9 41 41 H 1.09001 * 110.32642 * 237.79310 * 14 12 3 42 42 H 1.08999 * 110.32369 * 359.90057 * 14 12 3 43 43 H 1.08999 * 110.41067 * 142.63164 * 15 14 12 44 44 H 1.08999 * 110.41090 * 264.95715 * 15 14 12 45 45 H 1.08991 * 109.47522 * 295.01233 * 17 16 15 46 46 H 1.09010 * 109.47001 * 55.01221 * 17 16 15 47 47 H 0.97002 * 119.99536 * 0.02562 * 20 18 17 48 48 H 0.97004 * 119.99666 * 179.97438 * 24 23 21 49 49 H 1.08994 * 110.41514 * 280.71036 * 29 16 15 50 50 H 1.09005 * 110.41003 * 158.25853 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1193 2.0602 1.1599 5 8 2.6002 3.1736 1.1709 6 6 1.6349 1.4361 2.4430 7 1 0.7536 0.8218 2.2585 8 6 1.3262 2.5294 3.4947 9 6 1.8781 1.8932 4.7960 10 8 3.0656 1.2006 4.3549 11 6 2.7527 0.5950 3.0894 12 6 2.3968 2.0244 -1.2607 13 1 2.7989 3.0197 -1.0714 14 6 3.4318 1.1623 -2.0124 15 6 2.7533 0.7961 -3.3498 16 7 1.7416 1.8632 -3.5608 17 6 0.6960 1.4205 -4.4928 18 6 -0.3734 2.4781 -4.5873 19 8 -0.2241 3.5433 -4.0267 20 7 -1.4957 2.2404 -5.2948 21 6 -2.4683 3.2028 -5.3811 22 1 -2.3353 4.1512 -4.8819 23 6 -3.6255 2.9575 -6.1101 24 7 -3.7875 1.8032 -6.7170 25 14 -4.9511 4.2685 -6.2271 26 1 -4.3849 5.4903 -6.8532 27 1 -6.0749 3.7634 -7.0561 28 1 -5.4469 4.5940 -4.8658 29 6 1.1799 2.1065 -2.2072 30 1 -0.3634 -1.0261 0.0564 31 1 -0.3633 0.4642 -0.9169 32 1 -0.3633 0.5619 0.8603 33 1 1.8933 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8531 3.4543 3.2603 36 1 0.2529 2.7033 3.5716 37 1 1.1576 1.1910 5.2154 38 1 2.1311 2.6630 5.5250 39 1 2.4059 -0.4269 3.2432 40 1 3.6341 0.5945 2.4482 41 1 4.3414 1.7350 -2.1936 42 1 3.6596 0.2615 -1.4425 43 1 3.4831 0.7986 -4.1595 44 1 2.2709 -0.1786 -3.2769 45 1 1.1328 1.2566 -5.4778 46 1 0.2566 0.4909 -4.1310 47 1 -1.6152 1.3884 -5.7428 48 1 -4.5955 1.6319 -7.2256 49 1 0.4496 1.3378 -1.9548 50 1 0.7250 3.0958 -2.1566 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269313517.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:43 Heat of formation + Delta-G solvation = -122.475081 kcal Electronic energy + Delta-G solvation = -30945.920639 eV Core-core repulsion = 26779.533030 eV Total energy + Delta-G solvation = -4166.387609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93046 -40.69060 -39.76546 -38.81791 -36.80800 -35.92960 -33.74344 -33.28817 -32.58417 -31.22380 -30.44921 -29.42034 -28.15415 -26.09754 -25.02989 -23.98702 -23.41073 -22.41597 -21.51616 -20.97589 -19.96754 -19.87185 -18.74902 -17.88531 -17.69157 -17.37680 -16.94278 -16.71920 -16.55050 -16.10646 -15.82350 -15.77155 -15.68003 -15.18887 -15.14464 -14.88045 -14.49567 -14.05819 -13.94099 -13.83200 -13.72922 -13.55404 -13.21615 -13.08012 -12.98960 -12.87077 -12.68421 -12.51331 -12.45506 -12.41322 -12.34462 -12.29444 -12.13441 -12.03155 -11.77741 -11.60284 -11.49454 -11.03613 -10.58687 -10.30253 -10.03206 -9.79798 -9.35613 -8.48725 -5.97088 1.37033 1.39384 1.41396 1.49883 1.80175 2.03002 2.26824 2.86940 2.90599 3.18038 3.23678 3.35031 3.49266 3.62158 3.74521 3.88445 3.93843 4.02072 4.09196 4.13587 4.24314 4.26816 4.28850 4.32776 4.36192 4.44204 4.48508 4.54335 4.62628 4.63403 4.69933 4.77079 4.81159 4.84424 4.87763 4.90900 5.02245 5.08587 5.10315 5.17844 5.36103 5.38658 5.45008 5.81245 5.82544 5.92402 6.08030 6.30232 6.59030 7.04689 7.11320 7.54103 8.10988 8.68427 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.002628 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.030925 B =10653.466753 C =11585.932547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.096 3.904 3 N -0.599 5.599 4 C 0.517 3.483 5 O -0.583 6.583 6 C -0.144 4.144 7 H 0.135 0.865 8 C -0.149 4.149 9 C 0.051 3.949 10 O -0.400 6.400 11 C 0.065 3.935 12 C 0.139 3.861 13 H 0.073 0.927 14 C -0.120 4.120 15 C 0.033 3.967 16 N -0.510 5.510 17 C 0.050 3.950 18 C 0.437 3.563 19 O -0.619 6.619 20 N -0.572 5.572 21 C -0.333 4.333 22 H 0.075 0.925 23 C -0.010 4.010 24 N -0.918 5.918 25 Si 0.989 3.011 26 H -0.274 1.274 27 H -0.268 1.268 28 H -0.273 1.273 29 C 0.032 3.968 30 H 0.096 0.904 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.060 0.940 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.705 -13.601 17.354 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.026 4.026 3 N -0.330 5.330 4 C 0.306 3.694 5 O -0.462 6.462 6 C -0.165 4.165 7 H 0.153 0.847 8 C -0.187 4.187 9 C -0.025 4.025 10 O -0.319 6.319 11 C -0.012 4.012 12 C 0.034 3.966 13 H 0.092 0.908 14 C -0.159 4.159 15 C -0.094 4.094 16 N -0.235 5.235 17 C -0.082 4.082 18 C 0.224 3.776 19 O -0.505 6.505 20 N -0.209 5.209 21 C -0.463 4.463 22 H 0.093 0.907 23 C -0.210 4.210 24 N -0.559 5.559 25 Si 0.813 3.187 26 H -0.199 1.199 27 H -0.192 1.192 28 H -0.198 1.198 29 C -0.097 4.097 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.132 0.868 46 H 0.092 0.908 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.332 -11.943 17.456 23.995 hybrid contribution -1.582 0.188 -0.658 1.724 sum 9.749 -11.755 16.798 22.703 Atomic orbital electron populations 1.22488 0.95787 1.03935 1.01744 1.21910 0.94505 0.80585 1.05557 1.48136 1.64358 1.15166 1.05369 1.20986 0.77329 0.85050 0.85996 1.90680 1.46617 1.22015 1.86927 1.22949 1.01933 0.99350 0.92244 0.84703 1.23197 1.03333 0.98246 0.93945 1.23724 0.86850 0.96152 0.95798 1.88860 1.36240 1.70797 1.36028 1.23150 0.96688 0.96764 0.84566 1.21645 0.94456 0.97554 0.82966 0.90848 1.22633 0.97625 1.00562 0.95036 1.23288 0.94776 0.93069 0.98258 1.65090 1.12066 1.39031 1.07332 1.21952 0.91531 0.94794 0.99890 1.20820 0.84165 0.89854 0.82722 1.90500 1.80305 1.28892 1.50803 1.41903 1.16047 1.16950 1.46023 1.19568 0.97703 0.97498 1.31518 0.90719 1.25978 1.00000 0.99450 0.95555 1.69654 1.29346 1.23607 1.33299 0.85048 0.77334 0.77846 0.78480 1.19949 1.19208 1.19794 1.23472 0.96309 1.01517 0.88395 0.88539 0.94247 0.92195 0.87283 0.88251 0.91605 0.88181 0.89226 0.88026 0.87743 0.90504 0.90155 0.87785 0.88414 0.91479 0.86807 0.90819 0.76922 0.91226 0.92196 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 9.71 71.98 0.70 -2.03 16 2 C 0.10 1.26 4.92 86.38 0.42 1.69 16 3 N -0.60 -13.22 2.43 -792.88 -1.93 -15.15 16 4 C 0.52 13.26 6.59 87.66 0.58 13.84 16 5 O -0.58 -20.92 14.95 -3.05 -0.05 -20.96 16 6 C -0.14 -2.43 2.47 -10.55 -0.03 -2.46 16 7 H 0.14 1.55 5.30 -2.39 -0.01 1.54 16 8 C -0.15 -2.70 6.64 31.90 0.21 -2.49 16 9 C 0.05 0.73 7.72 72.67 0.56 1.29 16 10 O -0.40 -7.82 11.52 -148.98 -1.72 -9.54 16 11 C 0.07 0.95 6.50 72.36 0.47 1.42 16 12 C 0.14 3.83 3.46 45.89 0.16 3.99 16 13 H 0.07 2.58 6.97 -2.38 -0.02 2.56 16 14 C -0.12 -2.38 6.10 31.49 0.19 -2.19 16 15 C 0.03 0.69 6.49 86.45 0.56 1.25 16 16 N -0.51 -16.47 5.21 -886.07 -4.62 -21.09 16 17 C 0.05 1.68 5.41 85.56 0.46 2.15 16 18 C 0.44 20.92 7.42 87.65 0.65 21.57 16 19 O -0.62 -35.09 13.88 -3.08 -0.04 -35.13 16 20 N -0.57 -29.27 5.29 -306.99 -1.62 -30.90 16 21 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 22 H 0.07 4.59 7.16 -2.91 -0.02 4.57 16 23 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 24 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 25 Si 0.99 43.12 29.55 68.60 2.03 45.14 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 28 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 29 C 0.03 1.07 5.14 86.45 0.44 1.52 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.04 0.87 5.45 -2.38 -0.01 0.86 16 32 H 0.06 0.89 6.30 -2.39 -0.02 0.88 16 33 H 0.11 0.76 6.48 -2.39 -0.02 0.75 16 34 H 0.10 1.08 6.63 -2.39 -0.02 1.07 16 35 H 0.07 1.66 6.83 -2.39 -0.02 1.64 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 1.24 7.69 -2.39 -0.02 1.22 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.10 1.45 6.77 -2.39 -0.02 1.43 16 43 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 1.10 7.90 -2.39 -0.02 1.08 16 45 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 46 H 0.07 2.11 7.97 -2.38 -0.02 2.09 16 47 H 0.40 19.09 7.90 -92.71 -0.73 18.35 16 48 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 49 H 0.06 1.89 4.36 -2.39 -0.01 1.88 16 50 H 0.05 2.30 6.44 -2.38 -0.02 2.29 16 Total: -1.00 -79.53 384.57 -0.75 -80.28 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: 0.24 Total: 34.88 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 6.67 Total: 21.28 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -7.88 Total: -115.96 kcal Atomic # 8 Polarization: -63.82 SS G_CDS: -1.80 Total: -65.63 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -79.53 -0.75 -80.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269313517.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.194 kcal (2) G-P(sol) polarization free energy of solvation -79.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds