Wall clock time and date at job start Sat Apr 11 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47068 * 2 1 4 4 C 1.34786 * 119.99651 * 272.43403 * 3 2 1 5 5 O 1.21280 * 119.99609 * 185.27043 * 4 3 2 6 6 C 1.50694 * 120.00129 * 5.26872 * 4 3 2 7 7 H 1.09001 * 110.45782 * 26.14400 * 6 4 3 8 8 C 1.54514 * 110.50854 * 148.74621 * 6 4 3 9 9 C 1.54477 * 104.06236 * 118.78309 * 8 6 4 10 10 O 1.44430 * 104.80285 * 23.97920 * 9 8 6 11 11 C 1.44426 * 105.27276 * 319.48746 * 10 9 8 12 12 C 1.46496 * 120.00242 * 92.43401 * 3 2 1 13 13 H 1.08998 * 110.28804 * 174.50163 * 12 3 2 14 14 C 1.54257 * 110.32513 * 296.63456 * 12 3 2 15 15 C 1.54386 * 105.05941 * 118.89206 * 14 12 3 16 16 N 1.48558 * 104.59271 * 23.85679 * 15 14 12 17 17 C 1.46902 * 110.99551 * 200.95730 * 16 15 14 18 18 C 1.50691 * 109.47199 * 290.12409 * 17 16 15 19 19 O 1.21292 * 120.00205 * 0.02562 * 18 17 16 20 20 N 1.34782 * 120.00191 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99915 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00013 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99639 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99883 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00140 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.46852 * 90.00000 * 25 23 21 27 27 H 1.48501 * 109.47442 * 209.99807 * 25 23 21 28 28 H 1.48500 * 109.47151 * 330.00343 * 25 23 21 29 29 C 1.48721 * 104.28658 * 320.56903 * 16 15 14 30 30 H 1.09003 * 109.47376 * 172.04094 * 1 2 3 31 31 H 1.08999 * 109.47281 * 292.04159 * 1 2 3 32 32 H 1.09003 * 109.47264 * 52.04845 * 1 2 3 33 33 H 1.09000 * 109.47126 * 239.99977 * 2 1 3 34 34 H 1.08996 * 109.47334 * 120.00218 * 2 1 3 35 35 H 1.09001 * 110.51049 * 237.43023 * 8 6 4 36 36 H 1.09000 * 110.51083 * 0.02562 * 8 6 4 37 37 H 1.09000 * 110.36975 * 142.80738 * 9 8 6 38 38 H 1.08999 * 110.37323 * 265.14931 * 9 8 6 39 39 H 1.08999 * 110.37407 * 281.68102 * 11 10 9 40 40 H 1.09006 * 110.36954 * 159.34208 * 11 10 9 41 41 H 1.08994 * 110.32821 * 237.79225 * 14 12 3 42 42 H 1.08998 * 110.32206 * 359.89707 * 14 12 3 43 43 H 1.09000 * 110.40514 * 142.63269 * 15 14 12 44 44 H 1.08998 * 110.41149 * 264.95293 * 15 14 12 45 45 H 1.09001 * 109.47137 * 50.12321 * 17 16 15 46 46 H 1.09001 * 109.46791 * 170.12300 * 17 16 15 47 47 H 0.97001 * 119.99805 * 0.02562 * 20 18 17 48 48 H 0.97007 * 119.99959 * 179.97438 * 24 23 21 49 49 H 1.09003 * 110.38871 * 280.64232 * 29 16 15 50 50 H 1.09005 * 110.50406 * 158.15163 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1961 2.0331 -1.1663 5 8 2.6899 3.1408 -1.1726 6 6 1.7815 1.3855 -2.4623 7 1 0.9820 0.6650 -2.2895 8 6 1.3346 2.4555 -3.4834 9 6 2.3256 2.2914 -4.6571 10 8 2.7988 0.9308 -4.5529 11 6 2.9895 0.7015 -3.1398 12 6 2.3132 2.0539 1.2675 13 1 2.7550 3.0329 1.0820 14 6 1.0289 2.1965 2.1100 15 6 1.3095 1.4059 3.4060 16 7 2.7906 1.3878 3.5202 17 6 3.2382 0.2905 4.3883 18 6 2.8547 0.5899 5.8145 19 8 2.2660 1.6162 6.0816 20 7 3.1650 -0.2831 6.7933 21 6 2.8165 -0.0104 8.0910 22 1 2.2931 0.9038 8.3288 23 6 3.1369 -0.9102 9.1001 24 7 2.8025 -0.6491 10.3438 25 14 4.0430 -2.4911 8.6888 26 1 5.5073 -2.2584 8.7722 27 1 3.6544 -3.5501 9.6546 28 1 3.6879 -2.9216 7.3127 29 6 3.2639 1.1904 2.1242 30 1 -0.3634 -1.0178 -0.1423 31 1 -0.3634 0.3857 0.9525 32 1 -0.3634 0.6320 -0.8104 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.3142 2.2640 -3.8154 36 1 1.4141 3.4529 -3.0510 37 1 1.8157 2.4439 -5.6083 38 1 3.1553 2.9906 -4.5538 39 1 3.9211 1.1569 -2.8038 40 1 2.9897 -0.3673 -2.9254 41 1 0.8411 3.2453 2.3395 42 1 0.1787 1.7676 1.5796 43 1 0.8683 1.9133 4.2638 44 1 0.9202 0.3911 3.3241 45 1 2.7648 -0.6391 4.0723 46 1 4.3212 0.1894 4.3168 47 1 3.6355 -1.1040 6.5798 48 1 3.0258 -1.2775 11.0483 49 1 3.1835 0.1410 1.8407 50 1 4.2920 1.5364 2.0171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269313519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:52 Heat of formation + Delta-G solvation = -88.610515 kcal Electronic energy + Delta-G solvation = -30500.756442 eV Core-core repulsion = 26335.837311 eV Total energy + Delta-G solvation = -4164.919131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15874 -39.62966 -38.63951 -37.68404 -35.90273 -33.96979 -32.88015 -31.82435 -31.52948 -30.75340 -29.75463 -28.40422 -26.80122 -24.40609 -24.25787 -23.40099 -22.73706 -21.20241 -20.63997 -19.45882 -19.16375 -18.39962 -18.15671 -17.02435 -16.59321 -16.15678 -15.86293 -15.66747 -15.26584 -15.09789 -14.90043 -14.67928 -14.43343 -14.17398 -14.01270 -13.64980 -13.36929 -13.32453 -13.15951 -12.85705 -12.57519 -12.47273 -12.40983 -12.30409 -11.98498 -11.90626 -11.79328 -11.66209 -11.55573 -11.31669 -11.22108 -11.06324 -11.00574 -10.70023 -10.61791 -10.28882 -10.03750 -9.99417 -9.57589 -9.02833 -8.65707 -8.21252 -8.14145 -6.32561 -3.84015 2.16930 2.51120 2.99624 3.04879 3.13053 3.46984 3.71285 3.96708 3.98714 4.08455 4.09403 4.31530 4.44037 4.49254 4.53108 4.60603 4.72451 4.78380 4.79036 4.87271 4.92986 5.04620 5.11956 5.14115 5.19176 5.24523 5.27168 5.31365 5.35507 5.39312 5.48789 5.50482 5.51752 5.61746 5.63516 5.71926 5.82319 5.90021 5.95872 6.07350 6.22636 6.27187 6.33215 6.96503 7.00402 7.04125 7.56477 7.79753 8.12679 8.58512 8.93768 9.40710 9.81603 10.80549 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026417 B = 0.002146 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.653714 B =13041.787166 C =13374.294173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.526 3.474 5 O -0.533 6.533 6 C -0.149 4.149 7 H 0.107 0.893 8 C -0.141 4.141 9 C 0.046 3.954 10 O -0.371 6.371 11 C 0.063 3.937 12 C 0.137 3.863 13 H 0.112 0.888 14 C -0.141 4.141 15 C 0.038 3.962 16 N -0.481 5.481 17 C 0.033 3.967 18 C 0.454 3.546 19 O -0.558 6.558 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.021 3.979 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.038 0.962 45 H 0.050 0.950 46 H 0.091 0.909 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.049 0.951 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 -2.035 -28.964 29.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.026 4.026 3 N -0.335 5.335 4 C 0.313 3.687 5 O -0.409 6.409 6 C -0.171 4.171 7 H 0.125 0.875 8 C -0.179 4.179 9 C -0.031 4.031 10 O -0.290 6.290 11 C -0.015 4.015 12 C 0.033 3.967 13 H 0.130 0.870 14 C -0.180 4.180 15 C -0.090 4.090 16 N -0.205 5.205 17 C -0.099 4.099 18 C 0.239 3.761 19 O -0.439 6.439 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.108 4.108 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.121 0.879 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.067 0.933 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.617 -0.462 -28.465 28.588 hybrid contribution 0.343 -2.190 -0.093 2.218 sum -2.274 -2.652 -28.558 28.770 Atomic orbital electron populations 1.22456 0.95459 1.02675 1.03225 1.21647 0.94899 0.82494 1.03534 1.48074 1.65346 1.14222 1.05882 1.20319 0.77898 0.85661 0.84808 1.90706 1.43419 1.20033 1.86763 1.22840 1.00788 0.99624 0.93818 0.87502 1.22935 1.00198 0.99999 0.94817 1.23463 0.96573 0.84011 0.99023 1.89139 1.87117 1.29853 1.22866 1.23285 0.95961 1.00940 0.81305 1.21852 0.95552 0.97492 0.81776 0.86990 1.22922 0.97204 1.02226 0.95655 1.23171 0.88570 0.98716 0.98514 1.65151 1.08384 1.41405 1.05568 1.22091 1.01539 0.92459 0.93827 1.19563 0.85148 0.85706 0.85672 1.90552 1.43991 1.26419 1.82974 1.42205 1.53369 1.19731 1.07855 1.19419 1.35538 1.08084 0.80201 0.86271 1.25040 0.97870 0.98260 0.95054 1.69622 1.46135 1.36853 0.99520 0.86672 0.80688 0.83590 0.78404 1.19599 1.20203 1.19605 1.23540 0.99801 0.98331 0.89168 0.91197 0.91093 0.92202 0.90355 0.89527 0.90077 0.88764 0.88713 0.91675 0.91523 0.88352 0.90194 0.90170 0.87923 0.94417 0.93200 0.89093 0.79775 0.91621 0.93322 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 9.29 37.15 0.35 -0.71 16 2 C 0.10 0.63 5.25 -4.04 -0.02 0.61 16 3 N -0.60 -5.47 2.43 -164.55 -0.40 -5.87 16 4 C 0.53 5.30 6.61 -10.98 -0.07 5.23 16 5 O -0.53 -7.34 15.19 5.56 0.08 -7.26 16 6 C -0.15 -1.09 2.55 -90.21 -0.23 -1.32 16 7 H 0.11 0.60 5.39 -51.93 -0.28 0.32 16 8 C -0.14 -1.01 6.59 -25.16 -0.17 -1.18 16 9 C 0.05 0.33 7.63 37.93 0.29 0.62 16 10 O -0.37 -3.33 11.65 -35.23 -0.41 -3.74 16 11 C 0.06 0.46 6.98 37.93 0.26 0.73 16 12 C 0.14 1.54 3.45 -66.55 -0.23 1.31 16 13 H 0.11 1.48 6.98 -51.93 -0.36 1.12 16 14 C -0.14 -1.64 6.51 -25.35 -0.16 -1.81 16 15 C 0.04 0.55 5.80 -2.18 -0.01 0.54 16 16 N -0.48 -7.42 5.06 -231.27 -1.17 -8.59 16 17 C 0.03 0.53 5.30 -4.98 -0.03 0.50 16 18 C 0.45 10.11 7.58 -10.99 -0.08 10.02 16 19 O -0.56 -14.69 14.42 5.55 0.08 -14.61 16 20 N -0.59 -13.87 5.09 -10.97 -0.06 -13.93 16 21 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.58 13.96 55.50 0.77 -24.81 16 25 Si 0.88 19.13 27.74 -169.99 -4.71 14.41 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.27 -5.31 6.52 56.52 0.37 -4.95 16 29 C 0.02 0.24 6.04 -2.09 -0.01 0.23 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.51 5.72 -51.93 -0.30 0.21 16 32 H 0.06 0.34 7.01 -51.93 -0.36 -0.02 16 33 H 0.08 0.36 6.45 -51.93 -0.33 0.03 16 34 H 0.09 0.59 5.98 -51.93 -0.31 0.28 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.81 6.96 -51.93 -0.36 0.45 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.55 7.86 -51.93 -0.41 0.14 16 40 H 0.10 0.53 7.89 -51.93 -0.41 0.12 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 0.80 4.65 -51.93 -0.24 0.55 16 43 H 0.10 1.83 6.91 -51.93 -0.36 1.47 16 44 H 0.04 0.50 7.83 -51.93 -0.41 0.10 16 45 H 0.05 0.70 7.88 -51.93 -0.41 0.29 16 46 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 47 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 48 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.05 0.49 5.71 -51.93 -0.30 0.19 16 50 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 383.18 15.07 5.77 5.77 Total: -1.00 -34.37 383.18 -8.00 -42.36 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -7.59 Total: 9.13 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.37 Total: 7.13 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.85 Total: -53.20 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.25 Total: -25.61 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.37 -8.00 -42.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269313519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.246 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds