Wall clock time and date at job start Sat Apr 11 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47068 * 2 1 4 4 C 1.34786 * 119.99651 * 272.43403 * 3 2 1 5 5 O 1.21280 * 119.99609 * 185.27043 * 4 3 2 6 6 C 1.50694 * 120.00129 * 5.26872 * 4 3 2 7 7 H 1.09001 * 110.45782 * 26.14400 * 6 4 3 8 8 C 1.54514 * 110.50854 * 148.74621 * 6 4 3 9 9 C 1.54477 * 104.06236 * 118.78309 * 8 6 4 10 10 O 1.44430 * 104.80285 * 23.97920 * 9 8 6 11 11 C 1.44426 * 105.27276 * 319.48746 * 10 9 8 12 12 C 1.46496 * 120.00242 * 92.43401 * 3 2 1 13 13 H 1.08998 * 110.28804 * 174.50163 * 12 3 2 14 14 C 1.54257 * 110.32513 * 296.63456 * 12 3 2 15 15 C 1.54386 * 105.05941 * 118.89206 * 14 12 3 16 16 N 1.48558 * 104.59271 * 23.85679 * 15 14 12 17 17 C 1.46902 * 110.99551 * 200.95730 * 16 15 14 18 18 C 1.50691 * 109.47199 * 290.12409 * 17 16 15 19 19 O 1.21292 * 120.00205 * 0.02562 * 18 17 16 20 20 N 1.34782 * 120.00191 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99915 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00013 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99639 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99883 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00140 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.46852 * 90.00000 * 25 23 21 27 27 H 1.48501 * 109.47442 * 209.99807 * 25 23 21 28 28 H 1.48500 * 109.47151 * 330.00343 * 25 23 21 29 29 C 1.48721 * 104.28658 * 320.56903 * 16 15 14 30 30 H 1.09003 * 109.47376 * 172.04094 * 1 2 3 31 31 H 1.08999 * 109.47281 * 292.04159 * 1 2 3 32 32 H 1.09003 * 109.47264 * 52.04845 * 1 2 3 33 33 H 1.09000 * 109.47126 * 239.99977 * 2 1 3 34 34 H 1.08996 * 109.47334 * 120.00218 * 2 1 3 35 35 H 1.09001 * 110.51049 * 237.43023 * 8 6 4 36 36 H 1.09000 * 110.51083 * 0.02562 * 8 6 4 37 37 H 1.09000 * 110.36975 * 142.80738 * 9 8 6 38 38 H 1.08999 * 110.37323 * 265.14931 * 9 8 6 39 39 H 1.08999 * 110.37407 * 281.68102 * 11 10 9 40 40 H 1.09006 * 110.36954 * 159.34208 * 11 10 9 41 41 H 1.08994 * 110.32821 * 237.79225 * 14 12 3 42 42 H 1.08998 * 110.32206 * 359.89707 * 14 12 3 43 43 H 1.09000 * 110.40514 * 142.63269 * 15 14 12 44 44 H 1.08998 * 110.41149 * 264.95293 * 15 14 12 45 45 H 1.09001 * 109.47137 * 50.12321 * 17 16 15 46 46 H 1.09001 * 109.46791 * 170.12300 * 17 16 15 47 47 H 0.97001 * 119.99805 * 0.02562 * 20 18 17 48 48 H 0.97007 * 119.99959 * 179.97438 * 24 23 21 49 49 H 1.09003 * 110.38871 * 280.64232 * 29 16 15 50 50 H 1.09005 * 110.50406 * 158.15163 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1961 2.0331 -1.1663 5 8 2.6899 3.1408 -1.1726 6 6 1.7815 1.3855 -2.4623 7 1 0.9820 0.6650 -2.2895 8 6 1.3346 2.4555 -3.4834 9 6 2.3256 2.2914 -4.6571 10 8 2.7988 0.9308 -4.5529 11 6 2.9895 0.7015 -3.1398 12 6 2.3132 2.0539 1.2675 13 1 2.7550 3.0329 1.0820 14 6 1.0289 2.1965 2.1100 15 6 1.3095 1.4059 3.4060 16 7 2.7906 1.3878 3.5202 17 6 3.2382 0.2905 4.3883 18 6 2.8547 0.5899 5.8145 19 8 2.2660 1.6162 6.0816 20 7 3.1650 -0.2831 6.7933 21 6 2.8165 -0.0104 8.0910 22 1 2.2931 0.9038 8.3288 23 6 3.1369 -0.9102 9.1001 24 7 2.8025 -0.6491 10.3438 25 14 4.0430 -2.4911 8.6888 26 1 5.5073 -2.2584 8.7722 27 1 3.6544 -3.5501 9.6546 28 1 3.6879 -2.9216 7.3127 29 6 3.2639 1.1904 2.1242 30 1 -0.3634 -1.0178 -0.1423 31 1 -0.3634 0.3857 0.9525 32 1 -0.3634 0.6320 -0.8104 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.3142 2.2640 -3.8154 36 1 1.4141 3.4529 -3.0510 37 1 1.8157 2.4439 -5.6083 38 1 3.1553 2.9906 -4.5538 39 1 3.9211 1.1569 -2.8038 40 1 2.9897 -0.3673 -2.9254 41 1 0.8411 3.2453 2.3395 42 1 0.1787 1.7676 1.5796 43 1 0.8683 1.9133 4.2638 44 1 0.9202 0.3911 3.3241 45 1 2.7648 -0.6391 4.0723 46 1 4.3212 0.1894 4.3168 47 1 3.6355 -1.1040 6.5798 48 1 3.0258 -1.2775 11.0483 49 1 3.1835 0.1410 1.8407 50 1 4.2920 1.5364 2.0171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269313519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:51 Heat of formation + Delta-G solvation = -116.137139 kcal Electronic energy + Delta-G solvation = -30501.950086 eV Core-core repulsion = 26335.837311 eV Total energy + Delta-G solvation = -4166.112775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.91426 -40.70775 -39.85205 -38.85057 -36.80154 -35.92308 -33.80970 -33.58045 -32.52478 -31.49159 -30.36617 -29.40909 -28.22276 -25.93083 -25.00987 -24.04080 -23.42872 -22.37248 -21.46978 -21.22385 -20.27598 -19.83792 -18.95240 -17.83020 -17.69595 -17.23532 -16.78964 -16.71246 -16.50771 -16.25024 -15.95089 -15.73942 -15.51040 -15.11078 -14.89465 -14.83393 -14.62355 -14.41323 -14.18315 -14.03885 -13.80103 -13.52699 -13.34421 -13.11700 -13.04108 -12.97908 -12.71116 -12.53083 -12.41953 -12.40155 -12.26273 -12.16777 -11.97393 -11.87495 -11.75069 -11.57445 -11.48574 -10.87789 -10.83585 -10.42474 -10.23643 -9.77650 -9.38823 -8.40391 -6.01325 1.30021 1.36643 1.41799 1.45146 1.76806 1.96876 2.23822 2.68094 2.92209 3.14964 3.25391 3.34852 3.47807 3.62914 3.74086 3.80189 3.94970 4.03686 4.05578 4.14710 4.20211 4.22508 4.25358 4.29977 4.33770 4.37247 4.48006 4.49745 4.63561 4.65882 4.70368 4.72415 4.80879 4.86505 4.92632 4.97424 4.99387 5.03088 5.07344 5.12192 5.41826 5.45477 5.53435 5.70062 5.84845 5.90176 6.00785 6.31096 6.60620 6.89578 7.04931 7.40762 7.98671 8.77302 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026417 B = 0.002146 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.653714 B =13041.787166 C =13374.294173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 N -0.596 5.596 4 C 0.523 3.477 5 O -0.578 6.578 6 C -0.141 4.141 7 H 0.133 0.867 8 C -0.142 4.142 9 C 0.043 3.957 10 O -0.386 6.386 11 C 0.061 3.939 12 C 0.143 3.857 13 H 0.086 0.914 14 C -0.131 4.131 15 C 0.042 3.958 16 N -0.513 5.513 17 C 0.045 3.955 18 C 0.451 3.549 19 O -0.608 6.608 20 N -0.592 5.592 21 C -0.326 4.326 22 H 0.053 0.947 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.966 3.034 26 H -0.259 1.259 27 H -0.276 1.276 28 H -0.228 1.228 29 C 0.030 3.970 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.126 0.874 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.088 0.912 46 H 0.120 0.880 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.079 0.921 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -6.049 -32.338 32.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.031 4.031 3 N -0.328 5.328 4 C 0.312 3.688 5 O -0.458 6.458 6 C -0.162 4.162 7 H 0.151 0.849 8 C -0.180 4.180 9 C -0.033 4.033 10 O -0.305 6.305 11 C -0.016 4.016 12 C 0.038 3.962 13 H 0.104 0.896 14 C -0.169 4.169 15 C -0.086 4.086 16 N -0.238 5.238 17 C -0.086 4.086 18 C 0.239 3.761 19 O -0.492 6.492 20 N -0.234 5.234 21 C -0.455 4.455 22 H 0.071 0.929 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.786 3.214 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.151 1.151 29 C -0.098 4.098 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.144 0.856 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.138 0.862 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.097 0.903 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.899 -4.498 -31.876 32.248 hybrid contribution 0.042 -0.773 0.972 1.243 sum -1.857 -5.271 -30.904 31.406 Atomic orbital electron populations 1.22437 0.94877 1.03891 1.02460 1.21947 0.95375 0.80697 1.05103 1.48102 1.64817 1.15226 1.04655 1.20837 0.76998 0.85115 0.85801 1.90694 1.45483 1.22183 1.87423 1.22864 1.01491 0.99865 0.91995 0.84910 1.22949 1.01354 0.99007 0.94683 1.23553 0.96419 0.83302 1.00060 1.89125 1.87245 1.30408 1.23711 1.23390 0.95176 1.02386 0.80622 1.21550 0.94979 0.96812 0.82818 0.89559 1.22825 0.98356 1.01048 0.94715 1.23012 0.88281 0.99425 0.97849 1.65033 1.08900 1.42045 1.07780 1.22009 1.03496 0.93995 0.89094 1.20865 0.82901 0.84291 0.88038 1.90544 1.45662 1.28570 1.84387 1.42017 1.54090 1.20983 1.06314 1.18974 1.36699 1.06740 0.83135 0.92855 1.26147 0.98368 1.02920 0.94184 1.69813 1.47692 1.38949 1.01195 0.85348 0.78982 0.76749 0.80312 1.18320 1.20102 1.15126 1.23507 0.99561 1.00050 0.86689 0.89212 0.92623 0.91972 0.87614 0.89104 0.88012 0.90761 0.86818 0.92754 0.93040 0.85629 0.91834 0.88070 0.92489 0.92679 0.89475 0.86213 0.77481 0.91200 0.90325 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.29 71.98 0.67 -0.72 16 2 C 0.09 0.77 5.25 86.38 0.45 1.23 16 3 N -0.60 -9.38 2.43 -792.90 -1.93 -11.31 16 4 C 0.52 9.75 6.61 87.65 0.58 10.33 16 5 O -0.58 -16.08 15.19 -3.03 -0.05 -16.12 16 6 C -0.14 -1.68 2.55 -10.53 -0.03 -1.71 16 7 H 0.13 0.90 5.39 -2.39 -0.01 0.88 16 8 C -0.14 -1.79 6.59 31.61 0.21 -1.58 16 9 C 0.04 0.56 7.63 72.48 0.55 1.11 16 10 O -0.39 -6.05 11.65 -148.98 -1.74 -7.78 16 11 C 0.06 0.74 6.98 72.48 0.51 1.25 16 12 C 0.14 3.07 3.45 45.89 0.16 3.23 16 13 H 0.09 2.34 6.98 -2.39 -0.02 2.32 16 14 C -0.13 -2.99 6.51 31.49 0.20 -2.78 16 15 C 0.04 1.21 5.80 86.45 0.50 1.71 16 16 N -0.51 -15.11 5.06 -885.59 -4.48 -19.60 16 17 C 0.05 1.34 5.30 85.55 0.45 1.79 16 18 C 0.45 20.10 7.58 87.65 0.66 20.76 16 19 O -0.61 -33.63 14.42 -3.07 -0.04 -33.68 16 20 N -0.59 -27.46 5.09 -306.99 -1.56 -29.02 16 21 C -0.33 -19.01 10.16 84.04 0.85 -18.16 16 22 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 23 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 24 N -0.94 -56.36 13.96 21.66 0.30 -56.06 16 25 Si 0.97 38.13 27.74 68.60 1.90 40.03 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 27 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 28 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 29 C 0.03 0.62 6.04 86.42 0.52 1.14 16 30 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.62 5.72 -2.39 -0.01 0.61 16 32 H 0.06 0.47 7.01 -2.39 -0.02 0.45 16 33 H 0.11 0.38 6.45 -2.39 -0.02 0.37 16 34 H 0.09 0.76 5.98 -2.39 -0.01 0.74 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 1.26 6.96 -2.39 -0.02 1.25 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.05 0.78 7.86 -2.39 -0.02 0.76 16 40 H 0.13 0.79 7.89 -2.38 -0.02 0.78 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.10 1.86 4.65 -2.39 -0.01 1.85 16 43 H 0.06 2.15 6.91 -2.39 -0.02 2.14 16 44 H 0.06 1.35 7.83 -2.39 -0.02 1.34 16 45 H 0.09 1.97 7.88 -2.39 -0.02 1.95 16 46 H 0.12 2.89 8.13 -2.39 -0.02 2.88 16 47 H 0.39 14.74 5.76 -92.71 -0.53 14.21 16 48 H 0.28 15.32 8.31 -92.70 -0.77 14.55 16 49 H 0.08 1.19 5.71 -2.39 -0.01 1.17 16 50 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -83.58 383.18 -0.45 -84.03 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.38 Total: 32.44 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 6.77 Total: 17.07 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -7.67 Total: -115.99 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -1.83 Total: -57.58 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 1.90 Total: 40.03 kcal Total: -83.58 -0.45 -84.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269313519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.109 kcal (2) G-P(sol) polarization free energy of solvation -83.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds