Wall clock time and date at job start Sat Apr 11 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46914 * 2 1 4 4 N 1.46500 * 109.47231 * 119.99978 * 2 1 3 5 5 C 1.34775 * 119.99541 * 275.00043 * 4 2 1 6 6 O 1.21283 * 120.00348 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99595 * 180.02562 * 5 4 2 8 8 C 1.54270 * 110.03249 * 297.90852 * 7 5 4 9 9 C 1.54967 * 104.16254 * 217.14009 * 8 7 5 10 10 C 1.54891 * 102.77639 * 37.88463 * 9 8 7 11 11 C 1.53883 * 110.03310 * 180.69275 * 7 5 4 12 12 C 1.50693 * 109.47069 * 240.00118 * 2 1 3 13 13 O 1.21278 * 120.00092 * 239.99715 * 12 2 1 14 14 N 1.34780 * 120.00188 * 59.99899 * 12 2 1 15 15 C 1.46504 * 119.99814 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.46941 * 180.02562 * 15 14 12 17 17 O 1.42905 * 113.28091 * 313.06421 * 16 15 14 18 18 C 1.53495 * 114.20669 * 180.02562 * 16 15 14 19 19 N 1.47066 * 87.98658 * 220.34216 * 18 16 15 20 20 C 1.36937 * 136.06113 * 206.85859 * 19 18 16 21 21 H 1.07995 * 120.00001 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00320 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99557 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47363 * 60.00463 * 24 22 20 26 26 H 1.48506 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47174 * 300.00290 * 24 22 20 28 28 C 1.47067 * 87.88528 * 27.11900 * 19 18 16 29 29 H 1.08999 * 109.47156 * 60.00164 * 1 2 3 30 30 H 1.09003 * 109.46914 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47138 * 299.99731 * 1 2 3 32 32 H 0.96993 * 120.00341 * 95.00356 * 4 2 1 33 33 H 1.08994 * 110.02015 * 59.29897 * 7 5 4 34 34 H 1.09001 * 110.48600 * 335.78083 * 8 7 5 35 35 H 1.08992 * 110.48673 * 98.43020 * 8 7 5 36 36 H 1.09003 * 110.71628 * 279.57256 * 9 8 7 37 37 H 1.08996 * 110.92791 * 156.29680 * 9 8 7 38 38 H 1.09007 * 110.48643 * 203.40955 * 10 9 8 39 39 H 1.08998 * 110.60272 * 80.82291 * 10 9 8 40 40 H 1.08999 * 110.03006 * 238.56958 * 11 7 5 41 41 H 1.09000 * 110.03078 * 359.94755 * 11 7 5 42 42 H 0.96992 * 119.99879 * 359.97438 * 14 12 2 43 43 H 1.09003 * 109.47373 * 59.99924 * 15 14 12 44 44 H 1.08997 * 109.47135 * 299.99923 * 15 14 12 45 45 H 0.96696 * 113.99817 * 46.93921 * 17 16 15 46 46 H 1.09005 * 113.46950 * 105.56781 * 18 16 15 47 47 H 1.08994 * 113.52293 * 335.13266 * 18 16 15 48 48 H 0.96999 * 119.99537 * 179.97438 * 23 22 20 49 49 H 1.09007 * 113.46858 * 87.65629 * 28 19 18 50 50 H 1.08993 * 113.47208 * 218.09965 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8581 1.1585 2.4116 7 6 2.6500 -0.7284 3.5874 8 6 1.6794 -1.8627 3.9766 9 6 1.6763 -1.8440 5.5262 10 6 1.7423 -0.3309 5.8506 11 6 2.6904 0.2450 4.7785 12 6 2.0323 -0.7103 -1.2304 13 8 2.7296 -1.6964 -1.1192 14 7 1.7067 -0.2499 -2.4546 15 6 2.1946 -0.9409 -3.6507 16 6 1.6852 -0.2192 -4.9000 17 8 0.2916 0.0919 -4.8437 18 6 2.1345 -0.8565 -6.2221 19 7 2.3405 0.5018 -6.7469 20 6 2.3257 1.0949 -7.9810 21 1 2.1202 0.5042 -8.8615 22 6 2.5739 2.4554 -8.1004 23 7 2.8240 3.1753 -7.0273 24 14 2.5530 3.2645 -9.7839 25 1 1.2138 3.0887 -10.4010 26 1 2.8462 4.7132 -9.6405 27 1 3.5830 2.6347 -10.6486 28 6 2.5760 0.9417 -5.3634 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6317 1.1527 33 1 3.6444 -1.1347 3.4034 34 1 0.6805 -1.6591 3.5909 35 1 2.0444 -2.8207 3.6067 36 1 2.5509 -2.3620 5.9198 37 1 0.7596 -2.2837 5.9190 38 1 2.1529 -0.1721 6.8478 39 1 0.7543 0.1223 5.7693 40 1 3.7044 0.3105 5.1730 41 1 2.3471 1.2314 4.4664 42 1 1.1488 0.5385 -2.5435 43 1 1.8309 -1.9684 -3.6506 44 1 3.2846 -0.9413 -3.6509 45 1 0.0116 0.4931 -4.0096 46 1 1.3412 -1.4031 -6.7322 47 1 3.0555 -1.4330 -6.1363 48 1 2.9977 4.1260 -7.1107 49 1 3.6149 0.8445 -5.0478 50 1 2.1583 1.9241 -5.1432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271289860.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:08 Heat of formation + Delta-G solvation = -70.971499 kcal Electronic energy + Delta-G solvation = -29734.779454 eV Core-core repulsion = 25570.625208 eV Total energy + Delta-G solvation = -4164.154246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.81977 -39.88546 -38.83825 -37.41401 -35.27728 -35.08995 -34.14759 -32.11206 -31.50127 -29.31048 -28.98761 -28.49225 -26.27139 -24.87522 -24.54905 -22.43874 -21.76925 -21.06973 -20.49169 -20.00266 -19.43614 -18.34113 -17.45295 -16.76005 -16.59145 -16.13778 -15.81738 -15.59554 -15.32109 -15.13320 -14.85403 -14.53346 -14.09269 -13.94697 -13.80249 -13.65646 -13.60163 -13.30223 -12.91484 -12.75897 -12.66101 -12.28771 -12.08056 -11.95803 -11.82574 -11.71034 -11.49491 -11.46462 -11.16968 -11.11349 -10.92075 -10.86137 -10.74770 -10.51221 -10.15970 -10.03335 -9.85416 -9.56998 -9.40814 -9.27918 -8.97105 -8.86470 -6.94114 -5.80291 -3.12455 2.32716 2.43176 2.60539 3.19771 3.39008 3.42540 3.43942 4.07969 4.19596 4.29797 4.38097 4.40916 4.48038 4.72555 4.80781 4.87758 4.92909 4.98153 5.06481 5.10205 5.14942 5.22461 5.25986 5.28544 5.30375 5.44090 5.47839 5.55159 5.55523 5.67648 5.72180 5.76674 5.81595 5.91524 5.93006 5.98329 6.13472 6.18668 6.32019 6.45896 6.47637 6.93764 7.10863 7.22227 7.26277 7.45315 7.91184 7.93222 7.96998 8.08672 8.99524 9.66394 10.56506 11.37435 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.001915 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.334512 B =14620.250660 C =15076.478470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 H 0.116 0.884 4 N -0.711 5.711 5 C 0.523 3.477 6 O -0.538 6.538 7 C -0.113 4.113 8 C -0.116 4.116 9 C -0.124 4.124 10 C -0.124 4.124 11 C -0.120 4.120 12 C 0.513 3.487 13 O -0.539 6.539 14 N -0.716 5.716 15 C 0.108 3.892 16 C 0.056 3.944 17 O -0.520 6.520 18 C 0.135 3.865 19 N -0.599 5.599 20 C -0.215 4.215 21 H 0.082 0.918 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.916 3.084 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.136 3.864 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.410 0.590 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.400 0.600 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.359 0.641 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.254 0.746 49 H 0.033 0.967 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -10.121 25.043 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.134 0.866 4 N -0.365 5.365 5 C 0.309 3.691 6 O -0.415 6.415 7 C -0.134 4.134 8 C -0.154 4.154 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.157 4.157 12 C 0.298 3.702 13 O -0.416 6.416 14 N -0.369 5.369 15 C -0.017 4.017 16 C 0.013 3.987 17 O -0.324 6.324 18 C 0.007 3.993 19 N -0.324 5.324 20 C -0.342 4.342 21 H 0.100 0.900 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.746 3.254 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.211 1.211 28 C 0.010 3.990 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.247 0.753 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.236 0.764 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.205 0.795 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.051 0.949 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.233 -9.939 24.235 26.393 hybrid contribution 0.084 0.647 -0.540 0.847 sum -3.149 -9.292 23.695 25.646 Atomic orbital electron populations 1.22139 0.92626 1.03193 1.03843 1.20786 0.95822 0.98322 0.83662 0.86583 1.45754 1.67519 1.14849 1.08375 1.20628 0.76973 0.87131 0.84322 1.90682 1.50065 1.16020 1.84700 1.21955 1.01025 0.97139 0.93279 1.22382 0.99090 0.97219 0.96672 1.22512 1.02018 0.96706 0.94908 1.22366 0.99961 0.95289 0.98586 1.22178 1.00190 1.00056 0.93324 1.20503 0.80285 0.84693 0.84732 1.90694 1.37917 1.26413 1.86587 1.45878 1.53431 1.32009 1.05624 1.21997 1.00290 0.96558 0.82855 1.23449 0.82892 0.99333 0.92998 1.86660 1.22318 1.83313 1.40069 1.22374 0.97308 0.90486 0.89083 1.45256 1.81863 1.02609 1.02669 1.18859 1.41711 0.91244 0.82416 0.90007 1.24795 1.01943 0.96114 0.97599 1.69798 1.53763 1.06393 1.26909 0.86143 0.77926 0.78370 0.82981 1.20993 1.21532 1.21128 1.22753 0.94820 0.96781 0.84677 0.90682 0.91678 0.90724 0.75317 0.88164 0.91061 0.90698 0.91210 0.91294 0.91506 0.91503 0.91379 0.89104 0.76408 0.90828 0.90027 0.79462 0.93024 0.93304 0.93579 0.94911 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.38 37.16 0.35 -0.95 16 2 C 0.12 1.23 2.98 -69.09 -0.21 1.02 16 3 H 0.12 1.24 7.58 -51.93 -0.39 0.85 16 4 N -0.71 -6.81 4.89 -54.93 -0.27 -7.08 16 5 C 0.52 5.38 6.96 -10.99 -0.08 5.30 16 6 O -0.54 -7.28 14.87 5.56 0.08 -7.20 16 7 C -0.11 -0.85 3.30 -90.65 -0.30 -1.15 16 8 C -0.12 -0.69 6.30 -25.03 -0.16 -0.85 16 9 C -0.12 -0.66 6.91 -24.70 -0.17 -0.83 16 10 C -0.12 -0.78 6.83 -25.07 -0.17 -0.95 16 11 C -0.12 -0.92 6.40 -25.61 -0.16 -1.08 16 12 C 0.51 6.16 7.22 -10.99 -0.08 6.08 16 13 O -0.54 -8.01 15.84 5.56 0.09 -7.93 16 14 N -0.72 -8.35 5.23 -60.29 -0.32 -8.66 16 15 C 0.11 1.52 5.43 -4.04 -0.02 1.50 16 16 C 0.06 0.99 1.73 -90.11 -0.16 0.83 16 17 O -0.52 -9.12 13.56 -35.23 -0.48 -9.60 16 18 C 0.13 2.72 8.11 -8.51 -0.07 2.65 16 19 N -0.60 -15.35 3.78 -184.75 -0.70 -16.04 16 20 C -0.22 -6.08 10.75 -15.06 -0.16 -6.24 16 21 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -27.25 11.51 55.49 0.64 -26.62 16 24 Si 0.92 22.22 29.55 -169.99 -5.02 17.20 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.14 3.06 6.83 -8.51 -0.06 3.00 16 29 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.41 3.61 7.78 -40.82 -0.32 3.29 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.47 7.85 -51.93 -0.41 0.06 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.90 6.39 -51.93 -0.33 0.57 16 42 H 0.40 3.91 6.36 -40.82 -0.26 3.65 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 45 H 0.36 4.54 7.20 45.56 0.33 4.86 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 48 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 49 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 50 H 0.08 1.93 7.12 -51.93 -0.37 1.56 16 LS Contribution 402.64 15.07 6.07 6.07 Total: -1.00 -35.36 402.64 -9.03 -44.39 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.58 Total: 7.45 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -1.54 Total: 8.02 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.64 Total: -58.40 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.31 Total: -24.72 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.36 -9.03 -44.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271289860.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.580 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds