Wall clock time and date at job start Sat Apr 11 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00102 * 2 1 4 4 C 1.52999 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46994 * 55.00174 * 4 3 2 6 6 C 1.53000 * 109.47111 * 295.00084 * 4 3 2 7 7 C 1.50709 * 109.47035 * 175.00130 * 4 3 2 8 8 O 1.21284 * 120.00054 * 32.29687 * 7 4 3 9 9 N 1.34774 * 119.99908 * 212.30097 * 7 4 3 10 10 C 1.48313 * 128.20382 * 184.74882 * 9 7 4 11 11 C 1.53996 * 104.57582 * 221.86490 * 10 9 7 12 12 H 1.08999 * 112.89702 * 97.90741 * 11 10 9 13 13 C 1.55910 * 108.94601 * 224.42063 * 11 10 9 14 14 N 1.48730 * 104.36218 * 136.69478 * 13 11 10 15 15 C 1.46904 * 110.99500 * 198.76312 * 14 13 11 16 16 C 1.50700 * 109.46918 * 284.52389 * 15 14 13 17 17 O 1.21295 * 120.00406 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99947 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99952 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99819 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00003 * 179.97438 * 19 18 16 22 22 N 1.31415 * 120.00056 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99976 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47232 * 90.00604 * 23 21 19 25 25 H 1.48500 * 109.47084 * 210.00144 * 23 21 19 26 26 H 1.48500 * 109.47197 * 330.00127 * 23 21 19 27 27 C 1.48728 * 103.49829 * 317.89333 * 14 13 11 28 28 C 1.54411 * 104.34460 * 41.80701 * 27 14 13 29 29 H 1.08997 * 112.56932 * 98.13003 * 28 27 14 30 30 C 1.48314 * 128.20305 * 5.06166 * 9 7 4 31 31 H 1.09000 * 109.46859 * 60.00001 * 1 2 3 32 32 H 1.08991 * 109.47220 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47189 * 300.00253 * 1 2 3 34 34 H 1.09011 * 109.47270 * 59.99669 * 3 2 1 35 35 H 1.08998 * 109.47478 * 300.00307 * 3 2 1 36 36 H 1.09005 * 109.47253 * 302.94923 * 6 4 3 37 37 H 1.08998 * 109.47127 * 62.95264 * 6 4 3 38 38 H 1.09004 * 109.46669 * 182.95688 * 6 4 3 39 39 H 1.09009 * 110.45226 * 340.61971 * 10 9 7 40 40 H 1.08999 * 110.45634 * 103.17466 * 10 9 7 41 41 H 1.08998 * 110.70447 * 17.84769 * 13 11 10 42 42 H 1.08996 * 110.30193 * 255.34268 * 13 11 10 43 43 H 1.08999 * 109.47436 * 44.52540 * 15 14 13 44 44 H 1.09003 * 109.47265 * 164.53025 * 15 14 13 45 45 H 0.97002 * 119.99988 * 359.97438 * 18 16 15 46 46 H 0.96997 * 120.00329 * 179.97438 * 22 21 19 47 47 H 1.08999 * 110.46303 * 283.08657 * 27 14 13 48 48 H 1.09005 * 110.56411 * 160.56877 * 27 14 13 49 49 H 1.08993 * 110.45733 * 256.81971 * 30 9 7 50 50 H 1.09003 * 110.45778 * 19.25640 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8515 0.5682 -0.8409 6 6 3.9952 0.5368 1.3083 7 6 4.1481 2.5560 -0.1232 8 8 3.5871 3.5166 0.3599 9 7 5.3193 2.7148 -0.7708 10 6 6.1265 3.9505 -0.9167 11 6 6.5975 3.9348 -2.3828 12 1 5.9777 4.5513 -3.0339 13 6 8.1077 4.3186 -2.4335 14 7 8.7007 3.3564 -3.4002 15 6 10.1589 3.2802 -3.2397 16 6 10.7950 4.5087 -3.8374 17 8 10.1017 5.3639 -4.3466 18 7 12.1342 4.6572 -3.8062 19 6 12.7128 5.7751 -4.3495 20 1 12.0954 6.5365 -4.8029 21 6 14.0934 5.9284 -4.3169 22 7 14.8446 5.0017 -3.7657 23 14 14.8818 7.4512 -5.0578 24 1 14.9891 8.5079 -4.0200 25 1 16.2372 7.1120 -5.5607 26 1 14.0458 7.9443 -6.1818 27 6 8.0570 2.0641 -3.0429 28 6 6.5797 2.4314 -2.7837 29 1 5.9420 2.2329 -3.6450 30 6 6.1033 1.6969 -1.5116 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.6886 1.8464 0.8900 35 1 1.6887 1.8464 -0.8899 36 1 3.6343 1.1253 2.1519 37 1 3.5946 -0.4748 1.3731 38 1 5.0843 0.4986 1.3315 39 1 5.5133 4.8310 -0.7243 40 1 6.9835 3.9275 -0.2435 41 1 8.5675 4.2045 -1.4518 42 1 8.2263 5.3410 -2.7923 43 1 10.4053 3.2228 -2.1794 44 1 10.5346 2.3925 -3.7486 45 1 12.6886 3.9735 -3.3987 46 1 15.8084 5.1085 -3.7432 47 1 8.5100 1.6489 -2.1426 48 1 8.1344 1.3566 -3.8685 49 1 6.9570 1.3682 -0.9192 50 1 5.4729 0.8471 -1.7738 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271840570.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:14 Heat of formation + Delta-G solvation = -123.792118 kcal Electronic energy + Delta-G solvation = -29644.868382 eV Core-core repulsion = 25478.423662 eV Total energy + Delta-G solvation = -4166.444720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72138 -40.50350 -39.66552 -38.71863 -36.86516 -35.83941 -34.73911 -33.29167 -32.52167 -31.54981 -28.84908 -28.32031 -27.14548 -26.71057 -26.49956 -25.07678 -23.08929 -22.52512 -20.98928 -20.57523 -19.98588 -19.72202 -18.70801 -17.75486 -17.35043 -17.06233 -16.98500 -16.65651 -16.56640 -16.28879 -16.08931 -15.97446 -15.70202 -15.33893 -15.13241 -14.73181 -14.41916 -14.18677 -14.04557 -13.57917 -13.47346 -13.45341 -13.21125 -13.12918 -13.09547 -12.95004 -12.56374 -12.44798 -12.40929 -12.39480 -12.33862 -12.12725 -12.00232 -11.88506 -11.74006 -11.61072 -11.46586 -10.90162 -10.66900 -10.30870 -9.98433 -9.89275 -9.33013 -8.45141 -5.93330 1.38246 1.41953 1.44095 1.54385 1.71154 2.09184 2.29633 2.77926 2.87148 3.20848 3.26309 3.42467 3.47359 3.61406 3.76232 3.91144 3.97529 4.05026 4.14536 4.24850 4.27642 4.31281 4.34304 4.43243 4.44686 4.48322 4.56013 4.57374 4.61119 4.64223 4.69786 4.73769 4.79562 4.83819 4.85899 4.86697 4.94861 5.01848 5.12491 5.18106 5.24030 5.31756 5.42331 5.86637 5.93267 6.10826 6.11757 6.45033 6.63445 6.98851 7.15635 7.59797 8.16489 8.72234 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035523 B = 0.001791 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.029510 B =15633.960546 C =15791.298110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.081 3.919 4 C -0.098 4.098 5 H 0.121 0.879 6 C -0.131 4.131 7 C 0.540 3.460 8 O -0.586 6.586 9 N -0.620 5.620 10 C 0.111 3.889 11 C -0.094 4.094 12 H 0.087 0.913 13 C 0.045 3.955 14 N -0.508 5.508 15 C 0.047 3.953 16 C 0.441 3.559 17 O -0.618 6.618 18 N -0.576 5.576 19 C -0.332 4.332 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.275 1.275 27 C 0.038 3.962 28 C -0.094 4.094 29 H 0.106 0.894 30 C 0.105 3.895 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.113 0.887 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.069 0.931 48 H 0.098 0.902 49 H 0.096 0.904 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.716 -16.213 9.341 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C 0.003 3.997 4 C -0.119 4.119 5 H 0.139 0.861 6 C -0.188 4.188 7 C 0.331 3.669 8 O -0.466 6.466 9 N -0.353 5.353 10 C -0.012 4.012 11 C -0.114 4.114 12 H 0.105 0.895 13 C -0.083 4.083 14 N -0.232 5.232 15 C -0.084 4.084 16 C 0.228 3.772 17 O -0.504 6.504 18 N -0.214 5.214 19 C -0.462 4.462 20 H 0.094 0.906 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.200 1.200 27 C -0.090 4.090 28 C -0.113 4.113 29 H 0.125 0.875 30 C -0.017 4.017 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.131 0.869 45 H 0.230 0.770 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.116 0.884 49 H 0.114 0.886 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -22.336 -15.199 8.782 28.408 hybrid contribution 0.992 1.045 0.518 1.532 sum -21.343 -14.154 9.300 27.246 Atomic orbital electron populations 1.22947 0.79304 1.04132 1.00699 1.87777 1.21435 1.27220 1.95578 1.22176 0.91913 0.84709 1.00857 1.21157 0.94626 0.92701 1.03453 0.86146 1.21639 1.01997 1.01590 0.93610 1.20524 0.78953 0.91078 0.76381 1.90700 1.62159 1.43598 1.50193 1.49216 1.20931 1.12769 1.52353 1.22421 0.94787 0.88272 0.95752 1.22993 0.94962 0.97750 0.95657 0.89454 1.23445 0.93476 0.97425 0.93945 1.65352 1.02650 1.06741 1.48498 1.21907 0.89566 0.96476 1.00470 1.20873 0.82248 0.89844 0.84218 1.90491 1.62833 1.46325 1.50733 1.41932 1.05762 1.20783 1.52916 1.19632 0.90982 0.99592 1.35991 0.90553 1.25981 0.96104 1.01543 0.97533 1.69663 1.06370 1.35174 1.44904 0.84963 0.77529 0.77657 0.78400 1.19757 1.19496 1.19958 1.23436 0.92570 0.91298 1.01675 1.22944 0.96669 0.93203 0.98521 0.87537 1.22948 0.96406 0.91295 0.91018 0.93472 0.87735 0.93527 0.93080 0.93362 0.93189 0.89486 0.91065 0.91328 0.89816 0.92896 0.92796 0.90882 0.86883 0.77008 0.91363 0.91256 0.88407 0.88584 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.40 -6.21 10.29 -148.98 -1.53 -7.74 16 3 C 0.08 1.34 4.86 71.98 0.35 1.69 16 4 C -0.10 -1.47 2.70 -11.54 -0.03 -1.50 16 5 H 0.12 1.28 6.40 -2.39 -0.02 1.26 16 6 C -0.13 -1.66 9.04 71.98 0.65 -1.01 16 7 C 0.54 11.51 6.95 87.66 0.61 12.12 16 8 O -0.59 -17.56 16.59 -3.04 -0.05 -17.61 16 9 N -0.62 -11.38 3.31 -807.76 -2.68 -14.05 16 10 C 0.11 2.32 6.60 86.37 0.57 2.89 16 11 C -0.09 -2.08 4.23 -8.55 -0.04 -2.12 16 12 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 13 C 0.05 1.31 5.50 86.96 0.48 1.79 16 14 N -0.51 -15.05 4.99 -881.81 -4.40 -19.45 16 15 C 0.05 1.53 5.34 85.56 0.46 1.99 16 16 C 0.44 20.70 7.64 87.66 0.67 21.37 16 17 O -0.62 -34.26 14.85 -3.08 -0.05 -34.31 16 18 N -0.58 -29.29 5.29 -306.97 -1.62 -30.91 16 19 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 23 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 C 0.04 0.68 5.94 86.43 0.51 1.20 16 28 C -0.09 -1.52 4.13 -8.93 -0.04 -1.55 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 C 0.11 1.23 6.43 86.51 0.56 1.78 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.05 0.96 8.02 -2.38 -0.02 0.94 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.09 0.95 7.90 -2.39 -0.02 0.93 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 1.67 7.85 -2.38 -0.02 1.66 16 40 H 0.08 1.64 7.19 -2.39 -0.02 1.63 16 41 H 0.05 1.39 6.86 -2.39 -0.02 1.38 16 42 H 0.05 2.02 7.25 -2.39 -0.02 2.00 16 43 H 0.07 2.06 7.77 -2.39 -0.02 2.04 16 44 H 0.11 3.14 8.08 -2.39 -0.02 3.13 16 45 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 46 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 47 H 0.07 0.99 7.05 -2.39 -0.02 0.97 16 48 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 49 H 0.10 0.88 7.18 -2.39 -0.02 0.86 16 50 H 0.11 0.74 6.50 -2.39 -0.02 0.73 16 Total: -1.00 -75.52 399.47 -0.53 -76.05 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.21 Total: 30.07 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 7.28 Total: 21.92 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -8.42 Total: -113.46 kcal Atomic # 8 Polarization: -58.03 SS G_CDS: -1.63 Total: -59.66 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -75.52 -0.53 -76.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271840570.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.742 kcal (2) G-P(sol) polarization free energy of solvation -75.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds