Wall clock time and date at job start Sat Apr 11 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47284 * 2 1 4 4 C 1.46503 * 119.99518 * 269.99593 * 3 2 1 5 5 C 1.52991 * 109.47084 * 269.99864 * 4 3 2 6 6 C 1.34775 * 119.99798 * 89.99703 * 3 2 1 7 7 O 1.21277 * 120.00361 * 359.97438 * 6 3 2 8 8 C 1.50703 * 119.99170 * 180.02562 * 6 3 2 9 9 N 1.46503 * 109.46670 * 179.97438 * 8 6 3 10 10 C 1.46271 * 118.71402 * 90.00015 * 9 8 6 11 11 C 1.52563 * 109.56650 * 163.92105 * 10 9 8 12 12 C 1.53386 * 113.83604 * 176.52967 * 11 10 9 13 13 N 1.48062 * 86.02647 * 91.25561 * 12 11 10 14 14 C 1.46893 * 110.99861 * 137.22976 * 13 12 11 15 15 C 1.50708 * 109.47304 * 70.54747 * 14 13 12 16 16 H 1.07998 * 119.99573 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00114 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47165 * 60.00437 * 19 17 15 21 21 H 1.48500 * 109.47412 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47354 * 300.00366 * 19 17 15 23 23 C 1.48054 * 90.84388 * 24.30127 * 13 12 11 24 24 O 1.42681 * 112.47408 * 45.21743 * 11 10 9 25 25 C 1.43055 * 112.94678 * 295.89677 * 24 11 10 26 26 C 1.33712 * 118.71904 * 269.99894 * 9 8 6 27 27 O 1.21282 * 118.37931 * 3.26058 * 26 9 8 28 28 H 1.09001 * 109.46710 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46823 * 300.00404 * 1 2 3 30 30 H 1.09000 * 109.46950 * 60.00278 * 1 2 3 31 31 H 1.09000 * 109.47549 * 239.99747 * 2 1 3 32 32 H 1.09000 * 109.46950 * 119.99722 * 2 1 3 33 33 H 1.09005 * 109.46915 * 30.00120 * 4 3 2 34 34 H 1.09003 * 109.46665 * 149.99642 * 4 3 2 35 35 H 1.09002 * 109.47085 * 180.02562 * 5 4 3 36 36 H 1.09005 * 109.47454 * 299.99926 * 5 4 3 37 37 H 1.08999 * 109.47257 * 60.00722 * 5 4 3 38 38 H 1.08996 * 109.47696 * 60.00282 * 8 6 3 39 39 H 1.09000 * 109.47195 * 299.99471 * 8 6 3 40 40 H 1.08997 * 109.45817 * 43.88934 * 10 9 8 41 41 H 1.09004 * 109.45799 * 283.94482 * 10 9 8 42 42 H 1.09001 * 113.78355 * 205.53466 * 12 11 10 43 43 H 1.09007 * 113.78108 * 336.97316 * 12 11 10 44 44 H 1.09007 * 109.47224 * 190.54378 * 14 13 12 45 45 H 1.08997 * 109.47643 * 310.54707 * 14 13 12 46 46 H 0.96999 * 119.99839 * 179.97438 * 18 17 15 47 47 H 1.08993 * 113.78984 * 221.42158 * 23 13 12 48 48 H 1.09002 * 113.78491 * 89.97597 * 23 13 12 49 49 H 1.09000 * 109.34644 * 167.53374 * 25 24 11 50 50 H 1.08998 * 109.34591 * 287.08889 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2627 2.0718 -1.2688 5 6 3.7076 1.8313 -1.7104 6 6 2.2430 2.0166 1.1672 7 8 2.0404 1.4451 2.2175 8 6 2.7448 3.4376 1.1670 9 7 2.9071 3.8982 2.5483 10 6 4.1946 3.6920 3.2112 11 6 4.2777 4.5758 4.4520 12 6 5.5586 4.3747 5.2715 13 7 6.1347 5.4599 4.4453 14 6 6.9122 6.3938 5.2707 15 6 8.1771 5.7195 5.7362 16 1 8.3826 4.6992 5.4480 17 6 9.0719 6.4052 6.5299 18 7 8.8219 7.6479 6.8804 19 14 10.6394 5.5692 7.1074 20 1 11.4453 5.1603 5.9291 21 1 11.4260 6.5136 7.9408 22 1 10.2933 4.3694 7.9109 23 6 4.7829 5.9961 4.1678 24 8 3.0833 4.5355 5.2313 25 6 1.9479 5.0637 4.5397 26 6 1.8726 4.4908 3.1537 27 8 0.8213 4.5690 2.5539 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 3.8894 2.3454 -2.6542 36 1 4.3884 2.2155 -0.9507 37 1 3.8745 0.7621 -1.8407 38 1 2.0266 4.0766 0.6534 39 1 3.7049 3.4838 0.6531 40 1 5.0015 3.9515 2.5259 41 1 4.2891 2.6462 3.5035 42 1 5.4517 4.6337 6.3249 43 1 6.0321 3.4052 5.1162 44 1 7.1659 7.2750 4.6814 45 1 6.3206 6.6932 6.1358 46 1 9.4512 8.1301 7.4392 47 1 4.6399 6.3151 3.1354 48 1 4.4458 6.7360 4.8938 49 1 1.0405 4.8072 5.0864 50 1 2.0352 6.1484 4.4778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:24 Heat of formation + Delta-G solvation = -59.548210 kcal Electronic energy + Delta-G solvation = -31018.988217 eV Core-core repulsion = 26855.329322 eV Total energy + Delta-G solvation = -4163.658895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.29980 -40.11232 -39.01351 -36.54214 -36.47263 -35.35766 -32.93827 -32.60441 -30.39663 -29.94701 -28.93137 -27.59782 -26.06349 -25.71321 -24.45287 -23.96537 -23.35905 -21.71716 -20.26955 -19.21193 -18.14718 -17.83791 -17.56672 -17.12351 -16.46334 -16.26997 -15.82739 -15.67620 -15.20624 -14.93252 -14.66605 -14.45507 -14.33947 -14.09977 -14.04333 -13.74206 -13.31451 -13.26731 -13.15801 -12.96797 -12.94557 -12.42786 -12.29253 -12.16655 -12.06101 -12.03181 -11.81155 -11.57372 -11.51076 -11.31036 -11.05523 -10.90294 -10.66171 -10.40325 -10.27331 -10.09171 -9.83353 -9.34670 -9.21345 -9.02310 -8.83115 -8.55232 -7.96376 -6.10154 -4.12804 2.29452 2.43617 2.57855 2.90808 3.30016 3.34331 3.36872 3.66569 4.19980 4.23007 4.36922 4.47063 4.50333 4.69504 4.70917 4.76326 4.78046 4.83409 4.94925 5.04195 5.07805 5.12377 5.19740 5.25665 5.25947 5.34141 5.35991 5.43386 5.46208 5.63116 5.65420 5.67471 5.75895 5.90407 5.91405 5.99732 6.03074 6.24692 6.28465 6.35379 6.50278 6.94437 7.06814 7.11571 7.27545 7.53235 7.77514 7.90786 8.00140 8.00709 8.31257 8.93752 9.52158 11.00934 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.002631 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.868119 B =10641.667672 C =11472.775240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.616 5.616 4 C 0.102 3.898 5 C -0.174 4.174 6 C 0.502 3.498 7 O -0.523 6.523 8 C 0.093 3.907 9 N -0.584 5.584 10 C 0.119 3.881 11 C 0.059 3.941 12 C 0.049 3.951 13 N -0.470 5.470 14 C 0.163 3.837 15 C -0.514 4.514 16 H 0.063 0.937 17 C 0.058 3.942 18 N -0.897 5.897 19 Si 0.899 3.101 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.020 4.020 24 O -0.354 6.354 25 C 0.054 3.946 26 C 0.499 3.501 27 O -0.550 6.550 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.034 0.966 45 H 0.002 0.998 46 H 0.263 0.737 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.127 0.873 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.369 -10.762 -16.992 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.352 5.352 4 C -0.021 4.021 5 C -0.232 4.232 6 C 0.289 3.711 7 O -0.398 6.398 8 C -0.034 4.034 9 N -0.316 5.316 10 C -0.003 4.003 11 C 0.018 3.982 12 C -0.081 4.081 13 N -0.195 5.195 14 C 0.037 3.963 15 C -0.552 4.552 16 H 0.081 0.919 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.150 4.150 24 O -0.272 6.272 25 C -0.025 4.025 26 C 0.287 3.713 27 O -0.429 6.429 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.052 0.948 45 H 0.020 0.980 46 H 0.073 0.927 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.145 0.855 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.486 -11.072 -16.925 24.878 hybrid contribution 0.481 0.031 0.703 0.852 sum -14.005 -11.041 -16.223 24.108 Atomic orbital electron populations 1.22122 0.95899 1.02112 1.02423 1.21390 0.94393 0.82242 1.03004 1.48069 1.66681 1.14451 1.05969 1.21622 0.97146 0.97850 0.85524 1.22243 0.96368 1.02650 1.01965 1.21199 0.77457 0.88991 0.83493 1.90717 1.50743 1.67412 1.30928 1.21425 1.03824 0.92991 0.85128 1.47110 1.13527 1.57761 1.13197 1.21847 0.84151 1.00501 0.93838 1.23698 0.85859 0.96363 0.92260 1.23742 0.87894 0.98867 0.97548 1.68625 1.07949 1.08529 1.34396 1.20214 0.93199 0.91915 0.90938 1.21024 1.03994 0.99641 1.30572 0.91915 1.24983 0.98497 0.94883 0.96068 1.69939 1.36865 1.09957 1.36794 0.86538 0.82889 0.79155 0.78717 1.20138 1.21313 1.20155 1.24438 0.93449 0.95043 1.02054 1.88185 1.16310 1.83359 1.39322 1.22635 0.91760 0.99321 0.88790 1.20971 0.83062 0.77640 0.89610 1.90694 1.27908 1.58879 1.65429 0.91667 0.92136 0.92668 0.90665 0.89924 0.90082 0.90141 0.91120 0.92116 0.92152 0.86752 0.87224 0.88185 0.90142 0.89692 0.89105 0.94751 0.98001 0.92736 0.90073 0.90694 0.85518 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.11 0.93 6.13 -4.04 -0.02 0.91 16 3 N -0.62 -5.63 2.47 -173.68 -0.43 -6.06 16 4 C 0.10 0.58 5.93 -4.04 -0.02 0.56 16 5 C -0.17 -0.87 10.24 37.15 0.38 -0.48 16 6 C 0.50 6.30 7.73 -10.98 -0.08 6.21 16 7 O -0.52 -8.80 16.01 5.56 0.09 -8.71 16 8 C 0.09 1.02 4.30 -5.19 -0.02 1.00 16 9 N -0.58 -7.98 2.32 -176.04 -0.41 -8.39 16 10 C 0.12 1.63 5.79 -4.39 -0.03 1.61 16 11 C 0.06 0.92 1.21 -90.51 -0.11 0.81 16 12 C 0.05 0.88 6.87 -2.99 -0.02 0.86 16 13 N -0.47 -9.43 6.14 -242.39 -1.49 -10.92 16 14 C 0.16 4.07 4.58 -4.98 -0.02 4.04 16 15 C -0.51 -13.95 8.84 -34.44 -0.30 -14.25 16 16 H 0.06 1.67 7.80 -52.49 -0.41 1.26 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 19 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.02 -0.34 6.67 -2.99 -0.02 -0.36 16 24 O -0.35 -5.63 10.66 -35.23 -0.38 -6.01 16 25 C 0.05 0.74 6.67 35.75 0.24 0.98 16 26 C 0.50 7.56 7.57 -11.72 -0.09 7.47 16 27 O -0.55 -9.50 16.33 5.56 0.09 -9.41 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.08 0.84 7.42 -51.93 -0.39 0.46 16 33 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 34 H 0.08 0.41 6.44 -51.93 -0.33 0.08 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.35 7.22 -51.93 -0.38 -0.02 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.11 1.20 6.55 -51.93 -0.34 0.86 16 39 H 0.11 0.88 7.01 -51.93 -0.36 0.52 16 40 H 0.10 1.26 7.88 -51.93 -0.41 0.85 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.67 7.78 -51.93 -0.40 1.27 16 43 H 0.09 1.54 8.09 -51.93 -0.42 1.12 16 44 H 0.03 0.92 8.14 -51.92 -0.42 0.50 16 45 H 0.00 0.06 7.70 -51.93 -0.40 -0.34 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 48 H 0.07 1.29 7.79 -51.93 -0.40 0.89 16 49 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 50 H 0.09 1.08 7.92 -51.93 -0.41 0.67 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -34.44 403.59 -9.00 -43.44 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.43 Total: -0.75 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 0.15 Total: 9.88 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -1.59 Total: -50.69 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.20 Total: -24.13 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.44 -9.00 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.104 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds