Wall clock time and date at job start Sat Apr 11 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47284 * 2 1 4 4 C 1.46503 * 119.99518 * 269.99593 * 3 2 1 5 5 C 1.52991 * 109.47084 * 269.99864 * 4 3 2 6 6 C 1.34775 * 119.99798 * 89.99703 * 3 2 1 7 7 O 1.21277 * 120.00361 * 359.97438 * 6 3 2 8 8 C 1.50703 * 119.99170 * 180.02562 * 6 3 2 9 9 N 1.46503 * 109.46670 * 179.97438 * 8 6 3 10 10 C 1.46271 * 118.71402 * 90.00015 * 9 8 6 11 11 C 1.52563 * 109.56650 * 163.92105 * 10 9 8 12 12 C 1.53386 * 113.83604 * 176.52967 * 11 10 9 13 13 N 1.48062 * 86.02647 * 91.25561 * 12 11 10 14 14 C 1.46893 * 110.99861 * 137.22976 * 13 12 11 15 15 C 1.50708 * 109.47304 * 70.54747 * 14 13 12 16 16 H 1.07998 * 119.99573 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00114 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47165 * 60.00437 * 19 17 15 21 21 H 1.48500 * 109.47412 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47354 * 300.00366 * 19 17 15 23 23 C 1.48054 * 90.84388 * 24.30127 * 13 12 11 24 24 O 1.42681 * 112.47408 * 45.21743 * 11 10 9 25 25 C 1.43055 * 112.94678 * 295.89677 * 24 11 10 26 26 C 1.33712 * 118.71904 * 269.99894 * 9 8 6 27 27 O 1.21282 * 118.37931 * 3.26058 * 26 9 8 28 28 H 1.09001 * 109.46710 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46823 * 300.00404 * 1 2 3 30 30 H 1.09000 * 109.46950 * 60.00278 * 1 2 3 31 31 H 1.09000 * 109.47549 * 239.99747 * 2 1 3 32 32 H 1.09000 * 109.46950 * 119.99722 * 2 1 3 33 33 H 1.09005 * 109.46915 * 30.00120 * 4 3 2 34 34 H 1.09003 * 109.46665 * 149.99642 * 4 3 2 35 35 H 1.09002 * 109.47085 * 180.02562 * 5 4 3 36 36 H 1.09005 * 109.47454 * 299.99926 * 5 4 3 37 37 H 1.08999 * 109.47257 * 60.00722 * 5 4 3 38 38 H 1.08996 * 109.47696 * 60.00282 * 8 6 3 39 39 H 1.09000 * 109.47195 * 299.99471 * 8 6 3 40 40 H 1.08997 * 109.45817 * 43.88934 * 10 9 8 41 41 H 1.09004 * 109.45799 * 283.94482 * 10 9 8 42 42 H 1.09001 * 113.78355 * 205.53466 * 12 11 10 43 43 H 1.09007 * 113.78108 * 336.97316 * 12 11 10 44 44 H 1.09007 * 109.47224 * 190.54378 * 14 13 12 45 45 H 1.08997 * 109.47643 * 310.54707 * 14 13 12 46 46 H 0.96999 * 119.99839 * 179.97438 * 18 17 15 47 47 H 1.08993 * 113.78984 * 221.42158 * 23 13 12 48 48 H 1.09002 * 113.78491 * 89.97597 * 23 13 12 49 49 H 1.09000 * 109.34644 * 167.53374 * 25 24 11 50 50 H 1.08998 * 109.34591 * 287.08889 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2627 2.0718 -1.2688 5 6 3.7076 1.8313 -1.7104 6 6 2.2430 2.0166 1.1672 7 8 2.0404 1.4451 2.2175 8 6 2.7448 3.4376 1.1670 9 7 2.9071 3.8982 2.5483 10 6 4.1946 3.6920 3.2112 11 6 4.2777 4.5758 4.4520 12 6 5.5586 4.3747 5.2715 13 7 6.1347 5.4599 4.4453 14 6 6.9122 6.3938 5.2707 15 6 8.1771 5.7195 5.7362 16 1 8.3826 4.6992 5.4480 17 6 9.0719 6.4052 6.5299 18 7 8.8219 7.6479 6.8804 19 14 10.6394 5.5692 7.1074 20 1 11.4453 5.1603 5.9291 21 1 11.4260 6.5136 7.9408 22 1 10.2933 4.3694 7.9109 23 6 4.7829 5.9961 4.1678 24 8 3.0833 4.5355 5.2313 25 6 1.9479 5.0637 4.5397 26 6 1.8726 4.4908 3.1537 27 8 0.8213 4.5690 2.5539 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 3.8894 2.3454 -2.6542 36 1 4.3884 2.2155 -0.9507 37 1 3.8745 0.7621 -1.8407 38 1 2.0266 4.0766 0.6534 39 1 3.7049 3.4838 0.6531 40 1 5.0015 3.9515 2.5259 41 1 4.2891 2.6462 3.5035 42 1 5.4517 4.6337 6.3249 43 1 6.0321 3.4052 5.1162 44 1 7.1659 7.2750 4.6814 45 1 6.3206 6.6932 6.1358 46 1 9.4512 8.1301 7.4392 47 1 4.6399 6.3151 3.1354 48 1 4.4458 6.7360 4.8938 49 1 1.0405 4.8072 5.0864 50 1 2.0352 6.1484 4.4778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:23 Heat of formation + Delta-G solvation = -85.086927 kcal Electronic energy + Delta-G solvation = -31020.095659 eV Core-core repulsion = 26855.329322 eV Total energy + Delta-G solvation = -4164.766337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.49409 -41.14924 -40.22522 -37.88510 -37.32510 -36.45935 -34.96699 -33.23796 -31.77424 -30.89270 -29.84862 -29.12841 -27.19487 -27.15249 -26.11899 -24.51320 -24.18812 -23.28111 -21.58748 -20.09985 -19.35973 -19.06381 -18.46930 -18.44545 -18.08549 -17.31695 -16.97034 -16.85318 -16.46067 -16.29500 -15.98125 -15.85599 -15.23007 -15.05174 -14.86059 -14.78923 -14.65558 -14.50207 -14.22140 -13.93261 -13.91038 -13.80009 -13.48345 -13.28505 -13.14447 -12.99506 -12.93834 -12.75503 -12.60371 -12.54925 -12.32408 -12.14345 -11.99503 -11.96021 -11.70476 -11.36390 -11.25012 -11.12212 -10.63387 -10.53351 -9.92876 -9.75417 -9.67279 -8.21676 -6.31841 1.22521 1.43190 1.45524 1.52336 1.53242 1.54594 2.09388 2.39495 2.42933 3.02929 3.12536 3.21419 3.29338 3.46231 3.55491 3.95318 4.01563 4.07461 4.12046 4.15383 4.20869 4.26255 4.36421 4.41632 4.44425 4.46492 4.48272 4.52432 4.60341 4.66649 4.69715 4.73368 4.81249 4.89646 4.93006 4.98269 5.01482 5.06953 5.15215 5.22832 5.40625 5.50842 5.59800 5.75029 5.75681 6.06419 6.13124 6.30461 6.32966 6.79811 6.82694 7.10621 7.38084 8.89739 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.002631 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.868119 B =10641.667672 C =11472.775240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.108 3.892 3 N -0.609 5.609 4 C 0.095 3.905 5 C -0.170 4.170 6 C 0.494 3.506 7 O -0.578 6.578 8 C 0.091 3.909 9 N -0.583 5.583 10 C 0.128 3.872 11 C 0.075 3.925 12 C 0.043 3.957 13 N -0.474 5.474 14 C 0.179 3.821 15 C -0.528 4.528 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.933 5.933 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.268 1.268 23 C -0.016 4.016 24 O -0.369 6.369 25 C 0.051 3.949 26 C 0.493 3.507 27 O -0.576 6.576 28 H 0.080 0.920 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.143 0.857 40 H 0.118 0.882 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.008 0.992 45 H -0.024 1.024 46 H 0.265 0.735 47 H 0.103 0.897 48 H 0.067 0.933 49 H 0.141 0.859 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.055 -11.839 -19.272 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.014 4.014 3 N -0.343 5.343 4 C -0.027 4.027 5 C -0.228 4.228 6 C 0.282 3.718 7 O -0.457 6.457 8 C -0.035 4.035 9 N -0.314 5.314 10 C 0.005 3.995 11 C 0.035 3.965 12 C -0.086 4.086 13 N -0.197 5.197 14 C 0.052 3.948 15 C -0.566 4.566 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.573 5.573 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.193 1.193 23 C -0.145 4.145 24 O -0.287 6.287 25 C -0.027 4.027 26 C 0.282 3.718 27 O -0.457 6.457 28 H 0.099 0.901 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.126 0.874 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.140 0.860 39 H 0.161 0.839 40 H 0.136 0.864 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.121 0.879 44 H 0.026 0.974 45 H -0.007 1.007 46 H 0.073 0.927 47 H 0.122 0.878 48 H 0.085 0.915 49 H 0.158 0.842 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.171 -12.167 -19.273 26.838 hybrid contribution 0.295 0.339 1.335 1.409 sum -13.876 -11.828 -17.938 25.578 Atomic orbital electron populations 1.22066 0.95697 1.02847 1.01281 1.21503 0.94525 0.81976 1.03377 1.48204 1.65070 1.14695 1.06309 1.21922 0.98317 0.98196 0.84224 1.22209 0.95330 1.02764 1.02505 1.21498 0.77124 0.89484 0.83687 1.90692 1.53424 1.68648 1.32940 1.21682 1.05770 0.92129 0.83899 1.47143 1.12977 1.57110 1.14202 1.21761 0.84749 0.99684 0.93281 1.23409 0.85103 0.95712 0.92286 1.23727 0.89645 0.98613 0.96654 1.68519 1.09577 1.08248 1.33403 1.19860 0.93075 0.91866 0.90043 1.21381 1.04840 0.99845 1.30520 0.91646 1.25888 1.01960 0.95457 0.96186 1.70067 1.38166 1.11473 1.37595 0.85463 0.78706 0.78196 0.78443 1.19167 1.21063 1.19273 1.24481 0.91303 0.95683 1.03081 1.88159 1.16802 1.83713 1.40005 1.22827 0.91353 1.00250 0.88310 1.21177 0.83003 0.77674 0.89932 1.90679 1.28741 1.60163 1.66109 0.90108 0.95675 0.91193 0.87394 0.92357 0.87998 0.89301 0.89338 0.92961 0.92311 0.85990 0.83910 0.86404 0.90517 0.91706 0.87853 0.97367 1.00652 0.92659 0.87830 0.91475 0.84176 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 10.24 71.98 0.74 -1.70 16 2 C 0.11 1.66 6.13 86.38 0.53 2.19 16 3 N -0.61 -10.13 2.47 -821.79 -2.03 -12.16 16 4 C 0.09 0.80 5.93 86.38 0.51 1.31 16 5 C -0.17 -1.16 10.24 71.98 0.74 -0.42 16 6 C 0.49 12.01 7.73 87.66 0.68 12.69 16 7 O -0.58 -19.74 16.01 -3.02 -0.05 -19.79 16 8 C 0.09 1.83 4.30 85.63 0.37 2.19 16 9 N -0.58 -15.13 2.32 -829.86 -1.93 -17.06 16 10 C 0.13 3.31 5.79 86.28 0.50 3.81 16 11 C 0.08 2.30 1.21 -10.65 -0.01 2.28 16 12 C 0.04 1.55 6.87 86.20 0.59 2.14 16 13 N -0.47 -18.92 6.14 -925.06 -5.68 -24.60 16 14 C 0.18 9.11 4.58 85.56 0.39 9.51 16 15 C -0.53 -28.89 8.84 25.60 0.23 -28.67 16 16 H 0.07 3.47 7.80 -2.91 -0.02 3.45 16 17 C 0.00 0.20 5.46 84.65 0.46 0.66 16 18 N -0.93 -55.13 13.29 21.44 0.28 -54.85 16 19 Si 0.97 43.29 29.54 68.60 2.03 45.31 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 C -0.02 -0.53 6.67 86.21 0.58 0.04 16 24 O -0.37 -11.55 10.66 -148.98 -1.59 -13.14 16 25 C 0.05 1.36 6.67 71.07 0.47 1.83 16 26 C 0.49 14.50 7.57 87.65 0.66 15.16 16 27 O -0.58 -19.52 16.33 -3.04 -0.05 -19.57 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 0.95 8.07 -2.39 -0.02 0.93 16 32 H 0.06 1.20 7.42 -2.39 -0.02 1.18 16 33 H 0.10 0.49 8.07 -2.38 -0.02 0.47 16 34 H 0.09 0.63 6.44 -2.39 -0.02 0.62 16 35 H 0.09 0.32 8.14 -2.39 -0.02 0.31 16 36 H 0.05 0.46 7.22 -2.38 -0.02 0.44 16 37 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.12 2.31 6.55 -2.39 -0.02 2.29 16 39 H 0.14 1.86 7.01 -2.39 -0.02 1.84 16 40 H 0.12 2.66 7.88 -2.39 -0.02 2.64 16 41 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.06 2.62 7.78 -2.39 -0.02 2.60 16 43 H 0.10 3.44 8.09 -2.38 -0.02 3.42 16 44 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 45 H -0.02 -1.34 7.70 -2.39 -0.02 -1.36 16 46 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 47 H 0.10 2.92 8.09 -2.39 -0.02 2.90 16 48 H 0.07 2.33 7.79 -2.39 -0.02 2.31 16 49 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 50 H 0.11 2.46 7.92 -2.39 -0.02 2.44 16 Total: -1.00 -76.62 403.59 -0.67 -77.29 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.92 Total: 15.54 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 7.43 Total: 23.03 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -9.36 Total: -108.67 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -1.69 Total: -52.50 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -76.62 -0.67 -77.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.799 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds