Wall clock time and date at job start Sat Apr 11 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47290 * 2 1 4 4 C 1.46500 * 119.99977 * 269.99956 * 3 2 1 5 5 C 1.52999 * 109.46956 * 264.80743 * 4 3 2 6 6 C 1.34778 * 120.00109 * 89.99883 * 3 2 1 7 7 O 1.21588 * 119.99876 * 4.95153 * 6 3 2 8 8 N 1.34776 * 120.00383 * 184.95051 * 6 3 2 9 9 C 1.47660 * 134.46176 * 174.55070 * 8 6 3 10 10 C 1.53503 * 85.98286 * 155.72055 * 9 8 6 11 11 C 1.47670 * 134.45539 * 354.60160 * 8 6 3 12 12 C 1.52769 * 113.51347 * 269.06393 * 10 9 8 13 13 O 1.43377 * 108.25758 * 273.82956 * 12 10 9 14 14 C 1.42817 * 113.34568 * 294.38700 * 13 12 10 15 15 C 1.50280 * 110.49978 * 51.29519 * 14 13 12 16 16 O 1.21281 * 118.96791 * 161.58575 * 15 14 13 17 17 N 1.34265 * 122.05656 * 341.60205 * 15 14 13 18 18 C 1.46500 * 119.38235 * 181.96498 * 17 15 14 19 19 C 1.53006 * 109.46629 * 90.00410 * 18 17 15 20 20 C 1.50699 * 109.46661 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00538 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99945 * 180.02562 * 20 19 18 23 23 N 1.31521 * 119.99805 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00205 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46809 * 60.00122 * 24 22 20 26 26 H 1.48493 * 109.47024 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47345 * 300.00013 * 24 22 20 28 28 H 1.09004 * 109.47404 * 60.00026 * 1 2 3 29 29 H 1.09003 * 109.47210 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47240 * 300.00057 * 1 2 3 31 31 H 1.08998 * 109.47240 * 239.99943 * 2 1 3 32 32 H 1.08997 * 109.47327 * 120.00351 * 2 1 3 33 33 H 1.08999 * 109.47414 * 24.80839 * 4 3 2 34 34 H 1.09004 * 109.47018 * 144.81226 * 4 3 2 35 35 H 1.09007 * 109.47112 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.47645 * 300.00199 * 5 4 3 37 37 H 1.08997 * 109.47480 * 60.00642 * 5 4 3 38 38 H 1.09001 * 113.79058 * 41.45165 * 9 8 6 39 39 H 1.08992 * 113.79322 * 269.98966 * 9 8 6 40 40 H 1.08997 * 113.78830 * 90.01811 * 11 8 6 41 41 H 1.08996 * 113.79105 * 318.55637 * 11 8 6 42 42 H 1.09005 * 109.70183 * 154.14420 * 12 10 9 43 43 H 1.09000 * 109.70815 * 33.52688 * 12 10 9 44 44 H 1.09008 * 109.27240 * 171.55454 * 14 13 12 45 45 H 1.09000 * 109.27280 * 291.02854 * 14 13 12 46 46 H 1.08991 * 109.47426 * 210.00288 * 18 17 15 47 47 H 1.09004 * 109.47209 * 330.00737 * 18 17 15 48 48 H 1.08997 * 109.47226 * 299.99642 * 19 18 17 49 49 H 1.08997 * 109.47416 * 60.00201 * 19 18 17 50 50 H 0.96999 * 119.99622 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7396 1.9398 -1.6451 6 6 2.2429 2.0165 1.1672 7 8 2.1271 1.4163 2.2182 8 7 2.5960 3.3172 1.1694 9 6 2.8137 4.3280 2.2236 10 6 3.7150 5.0393 1.2048 11 6 2.9193 4.3029 0.1185 12 6 5.1797 4.6122 1.2841 13 8 5.8293 5.4175 2.2767 14 6 5.9001 6.8001 1.9262 15 6 4.5438 7.3132 1.5315 16 8 4.3457 8.5097 1.5310 17 7 3.5445 6.4883 1.1798 18 6 2.2586 7.0536 0.7637 19 6 2.2672 7.2809 -0.7493 20 6 0.9447 7.8630 -1.1772 21 1 0.1749 8.0515 -0.4436 22 6 0.7170 8.1539 -2.5056 23 7 1.6543 7.9239 -3.3992 24 14 -0.9226 8.8747 -3.0362 25 1 -1.1417 10.1695 -2.3427 26 1 -0.9142 9.0955 -4.5046 27 1 -2.0150 7.9329 -2.6830 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6472 1.6252 -2.0498 34 1 2.0072 3.1262 -1.1634 35 1 3.9214 2.4541 -2.5889 36 1 4.3549 2.3864 -0.8640 37 1 3.9950 0.8855 -1.7504 38 1 3.3485 3.9476 3.0938 39 1 1.9174 4.8901 2.4856 40 1 2.0544 4.8576 -0.2451 41 1 3.5380 3.9025 -0.6846 42 1 5.6593 4.7631 0.3170 43 1 5.2413 3.5610 1.5656 44 1 6.2654 7.3697 2.7808 45 1 6.5890 6.9246 1.0907 46 1 1.4569 6.3621 1.0226 47 1 2.0976 8.0038 1.2730 48 1 3.0689 7.9725 -1.0083 49 1 2.4283 6.3308 -1.2586 50 1 1.4939 8.1283 -4.3337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274249449.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:27 Heat of formation + Delta-G solvation = -44.346478 kcal Electronic energy + Delta-G solvation = -32272.832678 eV Core-core repulsion = 28109.832979 eV Total energy + Delta-G solvation = -4162.999699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.60342 -39.95254 -38.24619 -37.37117 -36.17260 -34.83103 -33.08385 -32.29784 -30.60003 -29.99618 -29.20600 -27.54890 -26.61735 -26.24634 -24.31667 -23.65023 -23.13831 -21.50316 -21.17394 -19.25652 -18.29485 -17.99848 -17.20178 -16.93059 -16.71899 -16.18816 -15.90010 -15.50574 -15.15929 -14.88770 -14.67088 -14.40481 -14.19267 -14.11512 -13.91533 -13.44235 -13.38503 -13.32806 -12.84955 -12.73641 -12.68761 -12.40883 -12.31099 -12.13734 -11.91493 -11.69625 -11.64081 -11.42595 -11.24161 -11.08195 -10.99424 -10.94169 -10.77081 -10.46974 -10.12998 -10.00642 -9.94019 -9.43564 -9.16126 -8.93188 -8.47176 -8.41455 -8.26504 -6.12252 -4.15380 2.32349 2.73570 3.01670 3.23452 3.26758 3.31651 3.34934 3.51522 3.61176 4.22602 4.32625 4.38563 4.58125 4.64419 4.77217 4.89892 4.99338 5.06085 5.19320 5.24215 5.24593 5.27492 5.28883 5.30986 5.34901 5.46277 5.51776 5.52057 5.58361 5.60075 5.67598 5.73268 5.84055 5.88501 5.92575 6.02791 6.11674 6.38034 6.51239 6.53725 6.67129 6.75313 7.02992 7.40824 7.56795 7.74815 7.86365 7.96476 8.21941 8.37236 8.56488 8.90175 9.49343 10.98713 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008006 B = 0.005007 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.559954 B = 5591.318252 C = 8060.222050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 N -0.626 5.626 4 C 0.090 3.910 5 C -0.176 4.176 6 C 0.736 3.264 7 O -0.591 6.591 8 N -0.658 5.658 9 C 0.127 3.873 10 C 0.101 3.899 11 C 0.085 3.915 12 C 0.077 3.923 13 O -0.367 6.367 14 C 0.046 3.954 15 C 0.485 3.515 16 O -0.531 6.531 17 N -0.584 5.584 18 C 0.110 3.890 19 C 0.014 3.986 20 C -0.523 4.523 21 H 0.056 0.944 22 C 0.062 3.938 23 N -0.892 5.892 24 Si 0.893 3.107 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.129 0.871 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.023 0.977 49 H 0.020 0.980 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.135 -14.209 4.678 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.007 3.993 3 N -0.362 5.362 4 C -0.033 4.033 5 C -0.234 4.234 6 C 0.441 3.559 7 O -0.470 6.470 8 N -0.398 5.398 9 C 0.003 3.997 10 C 0.012 3.988 11 C -0.038 4.038 12 C -0.001 4.001 13 O -0.285 6.285 14 C -0.033 4.033 15 C 0.272 3.728 16 O -0.407 6.407 17 N -0.317 5.317 18 C -0.011 4.011 19 C -0.024 4.024 20 C -0.562 4.562 21 H 0.074 0.926 22 C -0.140 4.140 23 N -0.531 5.531 24 Si 0.720 3.280 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.202 1.202 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.090 0.910 43 H 0.134 0.866 44 H 0.146 0.854 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.041 0.959 49 H 0.038 0.962 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.019 -14.183 5.242 16.274 hybrid contribution -1.179 0.533 -0.931 1.594 sum 4.840 -13.649 4.311 15.110 Atomic orbital electron populations 1.22167 0.96160 1.01911 1.02498 1.21266 0.94045 0.81161 1.02835 1.47149 1.69911 1.14597 1.04593 1.21945 0.96601 0.99182 0.85605 1.22346 0.96470 1.02416 1.02165 1.15242 0.77120 0.79704 0.83831 1.90900 1.60163 1.65284 1.30617 1.48831 1.73240 1.06858 1.10863 1.23401 0.98393 0.85342 0.92565 1.22655 0.96984 0.81476 0.97660 1.24254 1.00060 0.86904 0.92558 1.22693 0.87751 0.96356 0.93271 1.88146 1.78602 1.17658 1.44074 1.22835 0.94104 0.82680 1.03688 1.20954 0.87021 0.87135 0.77683 1.90763 1.81944 1.15070 1.52938 1.47734 1.14739 1.03993 1.65191 1.22006 0.80935 0.98355 0.99762 1.19471 0.97896 0.97321 0.87729 1.21022 0.99513 1.42681 0.92951 0.92576 1.24954 0.96818 0.95476 0.96708 1.69945 1.33061 1.48099 1.01960 0.86647 0.83992 0.79867 0.77467 1.20116 1.21245 1.20226 0.92553 0.91762 0.92258 0.90799 0.89892 0.90067 0.89145 0.90844 0.92220 0.92223 0.89163 0.89241 0.86521 0.88301 0.91037 0.86613 0.85370 0.89396 0.91723 0.90162 0.95900 0.96217 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.24 37.15 0.38 -1.28 16 2 C 0.13 1.33 6.14 -4.05 -0.02 1.30 16 3 N -0.63 -7.57 2.48 -179.43 -0.45 -8.02 16 4 C 0.09 0.94 5.69 -4.04 -0.02 0.92 16 5 C -0.18 -1.58 9.02 37.16 0.34 -1.25 16 6 C 0.74 10.98 8.47 -86.92 -0.74 10.24 16 7 O -0.59 -10.73 16.63 5.29 0.09 -10.64 16 8 N -0.66 -8.94 3.47 -186.24 -0.65 -9.58 16 9 C 0.13 1.70 7.86 -3.15 -0.02 1.67 16 10 C 0.10 1.33 1.50 -135.77 -0.20 1.13 16 11 C 0.08 1.12 4.00 -3.16 -0.01 1.11 16 12 C 0.08 0.86 5.99 37.04 0.22 1.08 16 13 O -0.37 -4.46 10.84 -35.23 -0.38 -4.84 16 14 C 0.05 0.57 6.94 35.80 0.25 0.82 16 15 C 0.49 8.21 7.64 -11.42 -0.09 8.12 16 16 O -0.53 -11.19 16.45 5.56 0.09 -11.10 16 17 N -0.58 -9.56 2.66 -162.65 -0.43 -10.00 16 18 C 0.11 2.12 4.43 -4.04 -0.02 2.11 16 19 C 0.01 0.32 4.93 -27.88 -0.14 0.18 16 20 C -0.52 -13.84 9.11 -34.44 -0.31 -14.15 16 21 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 24 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.08 0.94 7.36 -51.93 -0.38 0.56 16 33 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 34 H 0.09 1.10 4.59 -51.93 -0.24 0.86 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.57 6.67 -51.93 -0.35 0.22 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 1.16 8.09 -51.93 -0.42 0.74 16 39 H 0.09 1.23 7.22 -51.93 -0.38 0.85 16 40 H 0.12 1.84 4.78 -51.93 -0.25 1.60 16 41 H 0.10 1.16 4.19 -51.93 -0.22 0.94 16 42 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 43 H 0.12 1.18 7.97 -51.93 -0.41 0.76 16 44 H 0.13 1.36 8.14 -51.92 -0.42 0.94 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.06 1.16 6.32 -51.93 -0.33 0.83 16 47 H 0.08 1.71 7.30 -51.93 -0.38 1.33 16 48 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.02 0.46 6.02 -51.93 -0.31 0.15 16 50 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -33.23 390.02 -8.47 -41.70 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.84 Total: 1.63 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -0.49 Total: 13.60 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.79 Total: -52.04 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.20 Total: -26.57 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.23 -8.47 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274249449.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.643 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds