Wall clock time and date at job start Sat Apr 11 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 7 7 C 1.53006 * 109.46846 * 185.00166 * 6 4 2 8 8 N 1.46497 * 109.46795 * 179.97438 * 7 6 4 9 9 C 1.34778 * 119.99736 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99960 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99965 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.47006 * 60.00743 * 11 9 8 13 13 C 1.52996 * 109.47282 * 300.00307 * 11 9 8 14 14 N 1.46501 * 109.46845 * 180.02562 * 11 9 8 15 15 C 1.33870 * 122.76416 * 59.71542 * 14 11 9 16 16 O 1.21227 * 125.39538 * 359.97129 * 15 14 11 17 17 C 1.51315 * 109.20952 * 179.84121 * 15 14 11 18 18 C 1.54231 * 103.55351 * 0.38188 * 17 15 14 19 19 C 1.33883 * 122.76088 * 239.99725 * 14 11 9 20 20 O 1.21226 * 125.39514 * 0.02593 * 19 14 11 21 21 N 1.46500 * 109.47007 * 179.97438 * 4 2 1 22 22 C 1.36933 * 119.99983 * 84.99832 * 21 4 2 23 23 H 1.08002 * 120.00189 * 0.02562 * 22 21 4 24 24 C 1.38812 * 120.00422 * 179.97438 * 22 21 4 25 25 N 1.31623 * 119.99438 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00488 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46869 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47383 * 120.00043 * 26 24 22 29 29 H 1.48500 * 109.47270 * 240.00058 * 26 24 22 30 30 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 31 31 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 32 32 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46716 * 240.00370 * 2 1 3 34 34 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 36 36 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 37 37 H 1.09002 * 109.47069 * 304.99600 * 6 4 2 38 38 H 1.08991 * 109.47625 * 64.99919 * 6 4 2 39 39 H 1.09002 * 109.46824 * 299.99583 * 7 6 4 40 40 H 1.09001 * 109.47241 * 59.99481 * 7 6 4 41 41 H 0.96995 * 120.00714 * 0.02562 * 8 7 6 42 42 H 1.09001 * 109.46931 * 300.00182 * 13 11 9 43 43 H 1.09002 * 109.47148 * 60.00256 * 13 11 9 44 44 H 1.09004 * 109.47120 * 179.97438 * 13 11 9 45 45 H 1.09004 * 110.79507 * 241.77689 * 17 15 14 46 46 H 1.08993 * 110.55223 * 118.87146 * 17 15 14 47 47 H 1.09000 * 110.60682 * 241.26433 * 18 17 15 48 48 H 1.08997 * 110.74215 * 118.36033 * 18 17 15 49 49 H 0.96997 * 120.00274 * 264.99726 * 21 4 2 50 50 H 0.97001 * 120.00131 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 6 1.9349 -2.8479 2.5564 8 7 1.4460 -4.2289 2.5565 9 6 1.6868 -5.0289 3.6142 10 8 2.3078 -4.6053 4.5659 11 6 1.1845 -6.4497 3.6141 12 1 1.6189 -6.9886 2.7721 13 6 -0.3403 -6.4515 3.4889 14 7 1.5720 -7.1047 4.8660 15 6 1.1868 -6.6569 6.0674 16 8 0.4913 -5.6837 6.2640 17 6 1.7544 -7.5599 7.1407 18 6 2.5510 -8.6127 6.3433 19 6 2.3451 -8.1971 4.9030 20 8 2.8072 -8.7633 3.9358 21 7 3.5050 -0.7218 1.2488 22 6 4.1902 0.3528 1.7497 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3522 1.7498 25 7 6.2359 -0.6816 1.2689 26 14 6.5130 1.8177 2.4338 27 1 5.5484 2.8414 2.9102 28 1 7.3664 1.3761 3.5659 29 1 7.3671 2.4012 1.3683 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 0.4437 -2.1651 1.1596 38 1 1.9645 -2.7028 0.4073 39 1 3.0212 -2.8466 2.6459 40 1 1.5003 -2.3089 3.3983 41 1 0.9497 -4.5679 1.7953 42 1 -0.7747 -5.9126 4.3309 43 1 -0.6290 -5.9641 2.5577 44 1 -0.7036 -7.4793 3.4884 45 1 0.9549 -8.0341 7.7101 46 1 2.4147 -6.9995 7.8024 47 1 2.1478 -9.6105 6.5160 48 1 3.6083 -8.5767 6.6055 49 1 3.9897 -1.4833 0.8937 50 1 7.2059 -0.6820 1.2687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277569997.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:40 Heat of formation + Delta-G solvation = -98.663243 kcal Electronic energy + Delta-G solvation = -30454.061200 eV Core-core repulsion = 26288.706149 eV Total energy + Delta-G solvation = -4165.355050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.27093 -39.49524 -38.69509 -37.46613 -36.02470 -34.74828 -34.55725 -33.04207 -31.43876 -30.46411 -29.30275 -26.43598 -26.41382 -25.61324 -24.54730 -22.96324 -22.63076 -21.27965 -20.95389 -19.46129 -19.11899 -17.83952 -17.42695 -17.11751 -16.87796 -16.14341 -15.69857 -15.42162 -14.95680 -14.78964 -14.40476 -14.25004 -14.18321 -14.04474 -13.93337 -13.75572 -13.46785 -13.37903 -13.13302 -12.89512 -12.71814 -12.50546 -12.13491 -12.00184 -11.68401 -11.66485 -11.61468 -11.20544 -10.90464 -10.77258 -10.76132 -10.59227 -10.47559 -10.39914 -10.23739 -10.16927 -10.01912 -9.91319 -9.50024 -9.43823 -8.88552 -8.79694 -6.91485 -5.73325 -3.00852 1.33928 2.09572 2.50104 2.64543 3.24766 3.45692 3.51925 3.53695 3.79616 3.93712 4.12306 4.46911 4.51815 4.61804 4.62342 4.70207 4.94231 5.09390 5.21556 5.25540 5.27285 5.30915 5.37185 5.43081 5.49716 5.56495 5.71002 5.71901 5.72350 5.91916 6.02105 6.17258 6.23928 6.27857 6.40529 6.41132 6.54125 6.58533 6.66173 6.70592 6.72276 6.83866 7.10583 7.13633 7.34181 7.49195 7.61421 7.75476 8.25645 8.44833 9.56425 10.13029 10.47753 11.49258 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012188 B = 0.002786 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.881685 B =10046.238843 C =11379.782486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.186 3.814 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.124 3.876 8 N -0.721 5.721 9 C 0.505 3.495 10 O -0.520 6.520 11 C 0.107 3.893 12 H 0.129 0.871 13 C -0.161 4.161 14 N -0.559 5.559 15 C 0.532 3.468 16 O -0.464 6.464 17 C -0.155 4.155 18 C -0.154 4.154 19 C 0.529 3.471 20 O -0.486 6.486 21 N -0.721 5.721 22 C -0.230 4.230 23 H 0.072 0.928 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.901 3.099 27 H -0.280 1.280 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.396 0.604 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.383 0.617 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.231 -16.999 5.956 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.067 0.933 6 C -0.174 4.174 7 C 0.002 3.998 8 N -0.373 5.373 9 C 0.288 3.712 10 O -0.395 6.395 11 C 0.001 3.999 12 H 0.147 0.853 13 C -0.219 4.219 14 N -0.302 5.302 15 C 0.321 3.679 16 O -0.333 6.333 17 C -0.195 4.195 18 C -0.194 4.194 19 C 0.318 3.682 20 O -0.358 6.358 21 N -0.362 5.362 22 C -0.362 4.362 23 H 0.090 0.910 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.732 3.268 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.230 0.770 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.217 0.783 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.839 -16.260 6.329 22.905 hybrid contribution 0.611 0.492 -0.323 0.848 sum -14.228 -15.768 6.006 22.071 Atomic orbital electron populations 1.21937 0.97142 1.00616 1.00758 1.21770 0.93274 0.97736 1.00451 1.21829 1.04262 0.94850 0.98830 1.20180 0.86020 0.91024 0.95265 0.93312 1.22136 1.00520 0.98303 0.96468 1.21480 1.01209 0.78876 0.98279 1.45980 1.57689 1.13988 1.19661 1.20340 0.80463 0.87054 0.83368 1.90756 1.39560 1.75088 1.34083 1.21258 0.98063 0.92919 0.87648 0.85322 1.22112 0.91509 1.03762 1.04506 1.46493 1.47338 1.27764 1.08645 1.20681 0.79050 0.84425 0.83791 1.90770 1.34539 1.24414 1.83612 1.22452 1.02228 0.96896 0.97939 1.22451 1.04643 1.01438 0.90833 1.20869 0.75845 0.78797 0.92645 1.90784 1.47714 1.56018 1.41239 1.42450 0.98923 1.21090 1.73747 1.19238 0.88799 0.96225 1.31893 0.90984 1.24709 0.96488 0.97720 1.02028 1.69663 1.06718 1.29779 1.51852 0.86205 0.80096 0.82206 0.78269 1.20555 1.21976 1.22011 0.93283 0.93817 0.93222 0.92202 0.89502 0.95212 0.94120 0.91481 0.91609 0.89709 0.91745 0.77005 0.90140 0.89990 0.90977 0.86249 0.86031 0.86140 0.85971 0.78330 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.85 37.16 0.33 -1.67 16 2 C -0.11 -1.88 2.69 -90.63 -0.24 -2.13 16 3 C -0.14 -2.59 8.26 37.15 0.31 -2.28 16 4 C 0.19 3.47 2.02 -67.93 -0.14 3.33 16 5 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 6 C -0.14 -2.04 4.65 -26.73 -0.12 -2.17 16 7 C 0.12 2.08 5.56 -4.04 -0.02 2.06 16 8 N -0.72 -9.79 5.45 -60.29 -0.33 -10.12 16 9 C 0.50 7.74 6.79 -10.98 -0.07 7.66 16 10 O -0.52 -10.40 14.78 -11.06 -0.16 -10.56 16 11 C 0.11 1.22 3.12 -69.08 -0.22 1.01 16 12 H 0.13 1.33 7.41 -51.93 -0.38 0.95 16 13 C -0.16 -1.38 9.07 37.16 0.34 -1.04 16 14 N -0.56 -6.35 2.28 -109.49 -0.25 -6.60 16 15 C 0.53 6.11 6.69 -11.09 -0.07 6.03 16 16 O -0.46 -7.04 15.11 -11.02 -0.17 -7.21 16 17 C -0.16 -0.95 7.03 -26.94 -0.19 -1.14 16 18 C -0.15 -0.85 7.03 -26.94 -0.19 -1.04 16 19 C 0.53 5.47 8.08 -11.08 -0.09 5.38 16 20 O -0.49 -6.48 17.23 5.60 0.10 -6.38 16 21 N -0.72 -17.09 4.45 -53.43 -0.24 -17.33 16 22 C -0.23 -6.15 7.57 -15.06 -0.11 -6.26 16 23 H 0.07 1.90 7.40 -52.49 -0.39 1.51 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 26 Si 0.90 22.54 29.55 -169.99 -5.02 17.52 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.59 6.32 -51.93 -0.33 0.27 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.90 6.01 -51.93 -0.31 1.59 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.84 6.17 -51.93 -0.32 0.52 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.78 7.75 -51.93 -0.40 1.38 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.40 3.90 7.89 -40.82 -0.32 3.58 16 42 H 0.08 0.85 6.66 -51.93 -0.35 0.51 16 43 H 0.08 0.53 7.56 -51.93 -0.39 0.14 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 50 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 401.21 15.07 6.05 6.05 Total: -1.00 -36.42 401.21 -8.04 -44.46 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -8.14 Total: 10.16 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -0.60 Total: 7.27 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.09 Total: -61.31 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.23 Total: -24.15 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.42 -8.04 -44.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277569997.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.205 kcal (2) G-P(sol) polarization free energy of solvation -36.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds