Wall clock time and date at job start Sat Apr 11 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 7 7 C 1.53006 * 109.46846 * 185.00166 * 6 4 2 8 8 N 1.46497 * 109.46795 * 179.97438 * 7 6 4 9 9 C 1.34778 * 119.99736 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99960 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99965 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.47006 * 60.00743 * 11 9 8 13 13 C 1.52996 * 109.47282 * 300.00307 * 11 9 8 14 14 N 1.46501 * 109.46845 * 180.02562 * 11 9 8 15 15 C 1.33870 * 122.76416 * 59.71542 * 14 11 9 16 16 O 1.21227 * 125.39538 * 359.97129 * 15 14 11 17 17 C 1.51315 * 109.20952 * 179.84121 * 15 14 11 18 18 C 1.54231 * 103.55351 * 0.38188 * 17 15 14 19 19 C 1.33883 * 122.76088 * 239.99725 * 14 11 9 20 20 O 1.21226 * 125.39514 * 0.02593 * 19 14 11 21 21 N 1.46500 * 109.47007 * 179.97438 * 4 2 1 22 22 C 1.36933 * 119.99983 * 84.99832 * 21 4 2 23 23 H 1.08002 * 120.00189 * 0.02562 * 22 21 4 24 24 C 1.38812 * 120.00422 * 179.97438 * 22 21 4 25 25 N 1.31623 * 119.99438 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00488 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46869 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47383 * 120.00043 * 26 24 22 29 29 H 1.48500 * 109.47270 * 240.00058 * 26 24 22 30 30 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 31 31 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 32 32 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46716 * 240.00370 * 2 1 3 34 34 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 36 36 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 37 37 H 1.09002 * 109.47069 * 304.99600 * 6 4 2 38 38 H 1.08991 * 109.47625 * 64.99919 * 6 4 2 39 39 H 1.09002 * 109.46824 * 299.99583 * 7 6 4 40 40 H 1.09001 * 109.47241 * 59.99481 * 7 6 4 41 41 H 0.96995 * 120.00714 * 0.02562 * 8 7 6 42 42 H 1.09001 * 109.46931 * 300.00182 * 13 11 9 43 43 H 1.09002 * 109.47148 * 60.00256 * 13 11 9 44 44 H 1.09004 * 109.47120 * 179.97438 * 13 11 9 45 45 H 1.09004 * 110.79507 * 241.77689 * 17 15 14 46 46 H 1.08993 * 110.55223 * 118.87146 * 17 15 14 47 47 H 1.09000 * 110.60682 * 241.26433 * 18 17 15 48 48 H 1.08997 * 110.74215 * 118.36033 * 18 17 15 49 49 H 0.96997 * 120.00274 * 264.99726 * 21 4 2 50 50 H 0.97001 * 120.00131 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 6 1.9349 -2.8479 2.5564 8 7 1.4460 -4.2289 2.5565 9 6 1.6868 -5.0289 3.6142 10 8 2.3078 -4.6053 4.5659 11 6 1.1845 -6.4497 3.6141 12 1 1.6189 -6.9886 2.7721 13 6 -0.3403 -6.4515 3.4889 14 7 1.5720 -7.1047 4.8660 15 6 1.1868 -6.6569 6.0674 16 8 0.4913 -5.6837 6.2640 17 6 1.7544 -7.5599 7.1407 18 6 2.5510 -8.6127 6.3433 19 6 2.3451 -8.1971 4.9030 20 8 2.8072 -8.7633 3.9358 21 7 3.5050 -0.7218 1.2488 22 6 4.1902 0.3528 1.7497 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3522 1.7498 25 7 6.2359 -0.6816 1.2689 26 14 6.5130 1.8177 2.4338 27 1 5.5484 2.8414 2.9102 28 1 7.3664 1.3761 3.5659 29 1 7.3671 2.4012 1.3683 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 0.4437 -2.1651 1.1596 38 1 1.9645 -2.7028 0.4073 39 1 3.0212 -2.8466 2.6459 40 1 1.5003 -2.3089 3.3983 41 1 0.9497 -4.5679 1.7953 42 1 -0.7747 -5.9126 4.3309 43 1 -0.6290 -5.9641 2.5577 44 1 -0.7036 -7.4793 3.4884 45 1 0.9549 -8.0341 7.7101 46 1 2.4147 -6.9995 7.8024 47 1 2.1478 -9.6105 6.5160 48 1 3.6083 -8.5767 6.6055 49 1 3.9897 -1.4833 0.8937 50 1 7.2059 -0.6820 1.2687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277569997.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:40 Heat of formation + Delta-G solvation = -124.968423 kcal Electronic energy + Delta-G solvation = -30455.201878 eV Core-core repulsion = 26288.706149 eV Total energy + Delta-G solvation = -4166.495729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.10008 -40.70241 -39.61721 -38.98059 -36.94612 -36.12676 -35.34192 -34.92193 -32.78424 -31.69026 -30.73487 -27.75106 -27.10320 -27.04916 -25.72668 -24.66226 -23.38180 -22.61663 -22.13078 -20.72431 -20.30802 -19.15786 -18.76579 -18.29538 -17.70264 -17.17609 -16.97742 -16.76808 -16.46783 -15.80714 -15.69450 -15.39957 -15.28439 -15.22913 -15.16187 -14.87279 -14.70055 -14.53801 -14.40461 -13.88611 -13.56845 -13.52399 -13.35344 -13.17952 -12.97007 -12.92724 -12.91026 -12.68337 -12.49286 -12.21028 -12.11189 -11.98683 -11.94699 -11.73894 -11.57319 -11.50203 -11.35382 -11.20511 -11.03015 -10.84439 -10.63495 -10.19793 -8.92528 -7.90603 -5.15213 0.53238 1.27981 1.43348 1.43638 1.45015 1.53359 1.71922 2.15326 2.57087 3.18545 3.27195 3.42831 3.50942 3.62941 3.75753 3.85525 3.88246 3.91737 4.11002 4.17207 4.18732 4.25105 4.39585 4.50964 4.60109 4.66080 4.69305 4.74347 4.77845 4.79690 4.88651 4.91276 4.95901 5.02060 5.03201 5.12201 5.21561 5.23765 5.33801 5.38624 5.44197 5.56409 5.70121 5.79276 5.79428 6.32112 6.32205 6.38635 6.75077 7.10696 7.38628 8.15614 8.37262 9.33325 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012188 B = 0.002786 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.881685 B =10046.238843 C =11379.782486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.139 4.139 4 C 0.179 3.821 5 H 0.037 0.963 6 C -0.119 4.119 7 C 0.137 3.863 8 N -0.706 5.706 9 C 0.497 3.503 10 O -0.574 6.574 11 C 0.106 3.894 12 H 0.140 0.860 13 C -0.151 4.151 14 N -0.568 5.568 15 C 0.519 3.481 16 O -0.511 6.511 17 C -0.143 4.143 18 C -0.139 4.139 19 C 0.521 3.479 20 O -0.522 6.522 21 N -0.731 5.731 22 C -0.210 4.210 23 H 0.074 0.926 24 C -0.080 4.080 25 N -0.971 5.971 26 Si 0.956 3.044 27 H -0.267 1.267 28 H -0.301 1.301 29 H -0.295 1.295 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.039 0.961 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.046 0.954 41 H 0.418 0.582 42 H 0.058 0.942 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.155 0.845 46 H 0.130 0.870 47 H 0.159 0.841 48 H 0.137 0.863 49 H 0.371 0.629 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.882 -18.416 5.987 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.070 3.930 5 H 0.055 0.945 6 C -0.158 4.158 7 C 0.013 3.987 8 N -0.359 5.359 9 C 0.282 3.718 10 O -0.453 6.453 11 C 0.000 4.000 12 H 0.157 0.843 13 C -0.209 4.209 14 N -0.311 5.311 15 C 0.311 3.689 16 O -0.384 6.384 17 C -0.182 4.182 18 C -0.178 4.178 19 C 0.313 3.687 20 O -0.397 6.397 21 N -0.370 5.370 22 C -0.342 4.342 23 H 0.092 0.908 24 C -0.271 4.271 25 N -0.623 5.623 26 Si 0.787 3.213 27 H -0.191 1.191 28 H -0.229 1.229 29 H -0.222 1.222 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.256 0.744 42 H 0.078 0.922 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.173 0.827 46 H 0.148 0.852 47 H 0.176 0.824 48 H 0.155 0.845 49 H 0.203 0.797 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.570 -17.684 6.335 25.720 hybrid contribution 1.346 0.949 -0.349 1.683 sum -16.224 -16.735 5.985 24.064 Atomic orbital electron populations 1.21857 0.93616 1.02473 1.01695 1.21628 0.96103 0.96181 0.98697 1.21766 1.01543 0.96368 0.99919 1.20443 0.83165 0.93621 0.95765 0.94503 1.22011 1.02779 0.95553 0.95407 1.21088 0.98102 0.80719 0.98781 1.45761 1.57211 1.12658 1.20220 1.21176 0.79368 0.88683 0.82591 1.90722 1.41980 1.76503 1.36113 1.21359 0.99941 0.90029 0.88691 0.84252 1.22098 0.88901 1.05110 1.04777 1.46798 1.47495 1.28043 1.08742 1.21683 0.78099 0.84271 0.84891 1.90737 1.36779 1.26605 1.84298 1.22583 1.03175 0.95960 0.96514 1.22592 1.05676 1.02854 0.86669 1.21759 0.74577 0.77959 0.94365 1.90763 1.48974 1.57011 1.42921 1.42626 1.01181 1.19813 1.73383 1.19517 0.88960 0.96451 1.29322 0.90813 1.25378 0.97632 1.00134 1.03980 1.69806 1.06219 1.31735 1.54527 0.85297 0.78893 0.79948 0.77137 1.19096 1.22941 1.22242 0.93009 0.92280 0.90931 0.92678 0.93587 0.92995 0.94159 0.87414 0.90795 0.94639 0.93536 0.74426 0.92248 0.87621 0.88850 0.82698 0.85247 0.82363 0.84506 0.79733 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.85 71.98 0.64 -2.60 16 2 C -0.10 -3.38 2.69 -10.80 -0.03 -3.41 16 3 C -0.14 -4.98 8.26 71.98 0.59 -4.38 16 4 C 0.18 6.60 2.02 44.99 0.09 6.69 16 5 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 6 C -0.12 -3.43 4.65 30.60 0.14 -3.28 16 7 C 0.14 4.71 5.56 86.38 0.48 5.19 16 8 N -0.71 -19.00 5.45 -463.05 -2.52 -21.52 16 9 C 0.50 15.59 6.79 87.66 0.59 16.18 16 10 O -0.57 -24.20 14.78 12.86 0.19 -24.01 16 11 C 0.11 2.37 3.12 44.24 0.14 2.51 16 12 H 0.14 2.78 7.41 -2.39 -0.02 2.77 16 13 C -0.15 -2.35 9.07 71.98 0.65 -1.70 16 14 N -0.57 -12.62 2.28 -738.14 -1.68 -14.30 16 15 C 0.52 11.70 6.69 87.99 0.59 12.29 16 16 O -0.51 -15.92 15.11 13.02 0.20 -15.72 16 17 C -0.14 -1.40 7.03 30.46 0.21 -1.18 16 18 C -0.14 -1.12 7.03 30.46 0.21 -0.90 16 19 C 0.52 10.16 8.08 87.99 0.71 10.87 16 20 O -0.52 -13.61 17.23 -2.86 -0.05 -13.66 16 21 N -0.73 -35.60 4.45 -322.94 -1.44 -37.04 16 22 C -0.21 -11.51 7.57 84.03 0.64 -10.88 16 23 H 0.07 3.95 7.40 -2.91 -0.02 3.93 16 24 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 25 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 26 Si 0.96 47.74 29.55 68.60 2.03 49.77 16 27 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 28 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 29 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.38 6.32 -2.39 -0.02 1.36 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 2.02 6.01 -2.39 -0.01 2.01 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 2.28 6.17 -2.39 -0.01 2.26 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.04 1.58 7.75 -2.39 -0.02 1.56 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.42 7.42 7.89 -92.71 -0.73 6.69 16 42 H 0.06 1.22 6.66 -2.39 -0.02 1.21 16 43 H 0.11 1.08 7.56 -2.39 -0.02 1.06 16 44 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 45 H 0.16 0.44 8.14 -2.38 -0.02 0.42 16 46 H 0.13 1.14 8.14 -2.39 -0.02 1.13 16 47 H 0.16 0.15 8.14 -2.39 -0.02 0.13 16 48 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.37 19.77 7.80 -92.71 -0.72 19.05 16 50 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -86.61 401.21 2.64 -83.97 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -0.49 Total: 31.72 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 6.13 Total: 21.21 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -5.36 Total: -133.28 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: 0.34 Total: -53.39 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -86.61 2.64 -83.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277569997.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.002 kcal (2) G-P(sol) polarization free energy of solvation -86.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds