Wall clock time and date at job start Sat Apr 11 2020 05:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00179 * 2 1 4 4 C 1.52999 * 109.47185 * 125.00106 * 3 2 1 5 5 O 1.42900 * 109.46841 * 180.02562 * 4 3 2 6 6 C 1.42908 * 113.99670 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47277 * 330.00488 * 6 5 4 8 8 C 1.52996 * 109.46989 * 90.00357 * 6 5 4 9 9 C 1.50700 * 109.46842 * 210.00079 * 6 5 4 10 10 O 1.21277 * 120.00487 * 345.39434 * 9 6 5 11 11 N 1.34777 * 119.99719 * 165.39765 * 9 6 5 12 12 C 1.46501 * 119.99924 * 354.68616 * 11 9 6 13 13 C 1.46498 * 120.00075 * 174.68898 * 11 9 6 14 14 C 1.53510 * 114.17081 * 239.99597 * 13 11 9 15 15 N 1.47484 * 87.93386 * 220.32943 * 14 13 11 16 16 C 1.46895 * 111.00445 * 138.70473 * 15 14 13 17 17 C 1.50691 * 109.47662 * 169.99967 * 16 15 14 18 18 O 1.21297 * 119.99712 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00367 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00231 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00013 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99911 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00182 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99813 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47174 * 89.99806 * 24 22 20 26 26 H 1.48502 * 109.47217 * 210.00201 * 24 22 20 27 27 H 1.48501 * 109.47269 * 330.00307 * 24 22 20 28 28 C 1.47481 * 87.83241 * 27.01065 * 15 14 13 29 29 H 1.08004 * 119.99997 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00139 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.99997 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47147 * 5.00097 * 3 2 1 33 33 H 1.09003 * 109.47321 * 245.00234 * 3 2 1 34 34 H 1.08996 * 109.47046 * 60.00336 * 4 3 2 35 35 H 1.08996 * 109.47492 * 300.00313 * 4 3 2 36 36 H 1.09005 * 109.47212 * 294.30885 * 8 6 5 37 37 H 1.09001 * 109.47760 * 54.30656 * 8 6 5 38 38 H 1.08999 * 109.47240 * 174.30762 * 8 6 5 39 39 H 1.08998 * 109.47395 * 272.48429 * 12 11 9 40 40 H 1.09000 * 109.47413 * 32.48338 * 12 11 9 41 41 H 1.08999 * 109.47211 * 152.48184 * 12 11 9 42 42 H 1.09005 * 113.25601 * 12.95069 * 13 11 9 43 43 H 1.09002 * 113.47476 * 105.56891 * 14 13 11 44 44 H 1.08992 * 113.48102 * 335.09426 * 14 13 11 45 45 H 1.09006 * 109.46860 * 49.99868 * 16 15 14 46 46 H 1.08999 * 109.47055 * 290.00717 * 16 15 14 47 47 H 0.97002 * 119.99525 * 0.02562 * 19 17 16 48 48 H 0.97000 * 120.00412 * 180.02562 * 23 22 20 49 49 H 1.08996 * 113.47778 * 87.76006 * 28 15 14 50 50 H 1.09006 * 113.47324 * 218.22080 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7491 2.5708 1.1819 6 6 4.6887 2.6995 2.2510 7 1 4.3368 2.1343 3.1139 8 6 6.0471 2.1555 1.8044 9 6 4.8279 4.1527 2.6251 10 8 4.4048 5.0133 1.8826 11 7 5.4227 4.4960 3.7847 12 6 5.8291 3.4576 4.7350 13 6 5.6628 5.9074 4.0951 14 6 7.1419 6.2629 4.3014 15 7 6.7225 7.1300 5.4183 16 6 7.6428 7.0047 6.5563 17 6 7.3324 8.0724 7.5734 18 8 6.4325 8.8601 7.3704 19 7 8.0538 8.1516 8.7090 20 6 7.7717 9.1234 9.6341 21 1 6.9710 9.8252 9.4530 22 6 8.5159 9.2053 10.8046 23 7 9.4904 8.3517 11.0248 24 14 8.1310 10.5288 12.0654 25 1 7.1283 10.0146 13.0326 26 1 9.3734 10.8987 12.7899 27 1 7.5852 11.7255 11.3759 28 6 5.5505 6.2509 5.5871 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5065 1.0920 35 1 2.4774 1.2355 2.1130 36 1 5.9694 1.0822 1.6306 37 1 6.3521 2.6515 0.8829 38 1 6.7877 2.3451 2.5813 39 1 4.9955 3.2252 5.3977 40 1 6.1209 2.5601 4.1896 41 1 6.6733 3.8150 5.3246 42 1 5.1275 6.5903 3.4353 43 1 7.5773 6.8111 3.4659 44 1 7.7524 5.4161 4.6147 45 1 8.6692 7.1219 6.2082 46 1 7.5242 6.0222 7.0131 47 1 8.7732 7.5215 8.8715 48 1 10.0097 8.4086 11.8421 49 1 5.7362 5.4008 6.2435 50 1 4.6372 6.7889 5.8413 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277570971.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:50 Heat of formation + Delta-G solvation = -45.760049 kcal Electronic energy + Delta-G solvation = -29038.042438 eV Core-core repulsion = 24874.981443 eV Total energy + Delta-G solvation = -4163.060996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01976 -39.66821 -38.17327 -37.63865 -35.51519 -35.27620 -33.88358 -32.10714 -31.25791 -29.99829 -29.36057 -27.37355 -26.02766 -25.83061 -24.73464 -23.62813 -22.99645 -20.62448 -20.08808 -19.44623 -19.01552 -17.96546 -17.71029 -17.05906 -16.50518 -16.38846 -16.11629 -15.86094 -15.37097 -15.20740 -14.70658 -14.54874 -14.31305 -14.23366 -13.91071 -13.70987 -13.47310 -13.21335 -13.03993 -12.94849 -12.87235 -12.59943 -12.33492 -12.28465 -12.21303 -11.94364 -11.69191 -11.57745 -11.50097 -11.43520 -11.08680 -10.91363 -10.72895 -10.38956 -10.26699 -10.21252 -9.86010 -9.70598 -9.49852 -8.86923 -8.83949 -8.22409 -7.95922 -6.41633 -3.82226 1.75626 2.32280 2.40025 3.17930 3.26552 3.32760 3.36064 3.89866 4.00028 4.11826 4.25807 4.39374 4.40745 4.48864 4.53871 4.61402 4.67016 4.76084 4.78578 4.85839 4.93103 4.95137 5.02815 5.12866 5.16242 5.21299 5.26633 5.29098 5.35768 5.38678 5.49497 5.58225 5.59475 5.63019 5.68636 5.72017 5.86746 6.01976 6.14674 6.17690 6.26764 6.28528 6.47733 6.68307 7.05567 7.14875 7.55518 7.92860 8.06337 8.62409 9.18915 9.54601 10.07225 10.76266 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028314 B = 0.001636 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.678841 B =17113.098357 C =17253.014502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.156 4.156 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.358 6.358 6 C 0.073 3.927 7 H 0.084 0.916 8 C -0.173 4.173 9 C 0.517 3.483 10 O -0.513 6.513 11 N -0.604 5.604 12 C 0.064 3.936 13 C 0.119 3.881 14 C -0.018 4.018 15 N -0.433 5.433 16 C 0.012 3.988 17 C 0.446 3.554 18 O -0.573 6.573 19 N -0.567 5.567 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.904 5.904 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C -0.004 4.004 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.134 0.866 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.073 0.927 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 -22.310 -17.806 29.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.174 4.174 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.276 6.276 6 C 0.012 3.988 7 H 0.102 0.898 8 C -0.230 4.230 9 C 0.304 3.696 10 O -0.387 6.387 11 N -0.339 5.339 12 C -0.079 4.079 13 C 0.015 3.985 14 C -0.149 4.149 15 N -0.156 5.156 16 C -0.120 4.120 17 C 0.231 3.769 18 O -0.456 6.456 19 N -0.204 5.204 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.134 4.134 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.152 0.848 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.076 0.924 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.091 0.909 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.568 -20.429 -18.396 28.795 hybrid contribution 0.738 -1.006 1.446 1.910 sum -7.830 -21.435 -16.949 28.426 Atomic orbital electron populations 1.23939 0.95923 1.02169 1.00248 1.22788 0.96025 0.97904 1.00682 1.20641 0.97966 0.96020 0.98413 1.22554 0.93862 0.86168 0.98685 1.88045 1.54209 1.37438 1.47918 1.21895 0.91568 0.93905 0.91443 0.89818 1.22289 0.95334 1.01951 1.03468 1.20384 0.77624 0.90632 0.80971 1.90728 1.46349 1.51341 1.50271 1.47769 1.60314 1.07048 1.18739 1.22008 1.01290 0.91036 0.93578 1.22823 0.96679 0.81523 0.97493 1.24407 0.96819 0.96510 0.97144 1.68786 1.04257 1.38092 1.04418 1.22489 0.97938 0.98485 0.93106 1.19641 0.85925 0.87864 0.83502 1.90538 1.33081 1.44096 1.77875 1.41861 1.31585 1.30474 1.16501 1.19706 1.16615 1.09298 0.97136 0.87943 1.25239 0.95831 0.98417 0.98436 1.69606 1.20779 1.36782 1.27350 0.85864 0.77667 0.80729 0.80076 1.20456 1.20931 1.19396 1.24353 0.98219 0.95936 0.94918 0.88320 0.88256 0.87183 0.90395 0.89937 0.92963 0.93028 0.91129 0.90698 0.90549 0.91898 0.90525 0.90355 0.84843 0.89023 0.91203 0.89247 0.92359 0.77594 0.91930 0.90948 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.00 14.32 29.01 0.42 -0.59 16 2 C -0.16 -0.87 9.52 -36.03 -0.34 -1.21 16 3 C -0.09 -0.64 6.03 -27.88 -0.17 -0.81 16 4 C 0.06 0.46 5.73 37.16 0.21 0.67 16 5 O -0.36 -3.78 9.56 -54.70 -0.52 -4.30 16 6 C 0.07 0.64 2.29 -27.89 -0.06 0.57 16 7 H 0.08 0.52 6.98 -51.93 -0.36 0.16 16 8 C -0.17 -1.11 9.15 37.16 0.34 -0.77 16 9 C 0.52 6.25 6.96 -10.99 -0.08 6.17 16 10 O -0.51 -8.54 16.07 -13.91 -0.22 -8.76 16 11 N -0.60 -6.27 3.11 -173.62 -0.54 -6.81 16 12 C 0.06 0.43 8.55 59.85 0.51 0.94 16 13 C 0.12 1.50 4.57 -67.72 -0.31 1.19 16 14 C -0.02 -0.23 7.24 -7.55 -0.05 -0.28 16 15 N -0.43 -7.18 5.82 -246.12 -1.43 -8.61 16 16 C 0.01 0.21 5.30 -4.98 -0.03 0.18 16 17 C 0.45 10.61 7.85 -10.99 -0.09 10.52 16 18 O -0.57 -15.97 16.01 5.54 0.09 -15.88 16 19 N -0.57 -14.34 5.29 -10.96 -0.06 -14.40 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 24 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 C 0.00 -0.06 7.12 -7.55 -0.05 -0.12 16 29 H 0.10 0.53 7.84 -52.48 -0.41 0.12 16 30 H 0.10 0.42 8.06 -52.49 -0.42 0.00 16 31 H 0.11 0.48 8.06 -52.48 -0.42 0.05 16 32 H 0.08 0.60 7.79 -51.93 -0.40 0.20 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.28 8.01 -51.93 -0.42 -0.14 16 35 H 0.05 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.07 0.33 8.01 -51.93 -0.42 -0.09 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.39 6.21 -51.93 -0.32 0.07 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.34 4.74 -51.93 -0.25 0.09 16 41 H 0.08 0.51 6.09 -51.93 -0.32 0.20 16 42 H 0.13 1.96 7.26 -51.93 -0.38 1.59 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 0.72 6.77 -51.93 -0.35 0.37 16 45 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 46 H 0.06 0.86 7.30 -51.93 -0.38 0.49 16 47 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.07 0.89 5.79 -51.93 -0.30 0.59 16 50 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 408.72 15.07 6.16 6.16 Total: -1.00 -35.59 408.72 -8.71 -44.30 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.94 Total: 7.47 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 0.06 Total: 8.48 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -1.31 Total: -53.54 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.66 Total: -28.94 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.59 -8.71 -44.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277570971.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.463 kcal (2) G-P(sol) polarization free energy of solvation -35.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds