Wall clock time and date at job start Sat Apr 11 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00179 * 2 1 4 4 C 1.52999 * 109.47185 * 125.00106 * 3 2 1 5 5 O 1.42900 * 109.46841 * 180.02562 * 4 3 2 6 6 C 1.42908 * 113.99670 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47277 * 330.00488 * 6 5 4 8 8 C 1.52996 * 109.46989 * 90.00357 * 6 5 4 9 9 C 1.50700 * 109.46842 * 210.00079 * 6 5 4 10 10 O 1.21277 * 120.00487 * 345.39434 * 9 6 5 11 11 N 1.34777 * 119.99719 * 165.39765 * 9 6 5 12 12 C 1.46501 * 119.99924 * 354.68616 * 11 9 6 13 13 C 1.46498 * 120.00075 * 174.68898 * 11 9 6 14 14 C 1.53510 * 114.17081 * 239.99597 * 13 11 9 15 15 N 1.47484 * 87.93386 * 220.32943 * 14 13 11 16 16 C 1.46895 * 111.00445 * 138.70473 * 15 14 13 17 17 C 1.50691 * 109.47662 * 169.99967 * 16 15 14 18 18 O 1.21297 * 119.99712 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00367 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00231 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00013 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99911 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00182 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99813 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47174 * 89.99806 * 24 22 20 26 26 H 1.48502 * 109.47217 * 210.00201 * 24 22 20 27 27 H 1.48501 * 109.47269 * 330.00307 * 24 22 20 28 28 C 1.47481 * 87.83241 * 27.01065 * 15 14 13 29 29 H 1.08004 * 119.99997 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00139 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.99997 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47147 * 5.00097 * 3 2 1 33 33 H 1.09003 * 109.47321 * 245.00234 * 3 2 1 34 34 H 1.08996 * 109.47046 * 60.00336 * 4 3 2 35 35 H 1.08996 * 109.47492 * 300.00313 * 4 3 2 36 36 H 1.09005 * 109.47212 * 294.30885 * 8 6 5 37 37 H 1.09001 * 109.47760 * 54.30656 * 8 6 5 38 38 H 1.08999 * 109.47240 * 174.30762 * 8 6 5 39 39 H 1.08998 * 109.47395 * 272.48429 * 12 11 9 40 40 H 1.09000 * 109.47413 * 32.48338 * 12 11 9 41 41 H 1.08999 * 109.47211 * 152.48184 * 12 11 9 42 42 H 1.09005 * 113.25601 * 12.95069 * 13 11 9 43 43 H 1.09002 * 113.47476 * 105.56891 * 14 13 11 44 44 H 1.08992 * 113.48102 * 335.09426 * 14 13 11 45 45 H 1.09006 * 109.46860 * 49.99868 * 16 15 14 46 46 H 1.08999 * 109.47055 * 290.00717 * 16 15 14 47 47 H 0.97002 * 119.99525 * 0.02562 * 19 17 16 48 48 H 0.97000 * 120.00412 * 180.02562 * 23 22 20 49 49 H 1.08996 * 113.47778 * 87.76006 * 28 15 14 50 50 H 1.09006 * 113.47324 * 218.22080 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7491 2.5708 1.1819 6 6 4.6887 2.6995 2.2510 7 1 4.3368 2.1343 3.1139 8 6 6.0471 2.1555 1.8044 9 6 4.8279 4.1527 2.6251 10 8 4.4048 5.0133 1.8826 11 7 5.4227 4.4960 3.7847 12 6 5.8291 3.4576 4.7350 13 6 5.6628 5.9074 4.0951 14 6 7.1419 6.2629 4.3014 15 7 6.7225 7.1300 5.4183 16 6 7.6428 7.0047 6.5563 17 6 7.3324 8.0724 7.5734 18 8 6.4325 8.8601 7.3704 19 7 8.0538 8.1516 8.7090 20 6 7.7717 9.1234 9.6341 21 1 6.9710 9.8252 9.4530 22 6 8.5159 9.2053 10.8046 23 7 9.4904 8.3517 11.0248 24 14 8.1310 10.5288 12.0654 25 1 7.1283 10.0146 13.0326 26 1 9.3734 10.8987 12.7899 27 1 7.5852 11.7255 11.3759 28 6 5.5505 6.2509 5.5871 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5065 1.0920 35 1 2.4774 1.2355 2.1130 36 1 5.9694 1.0822 1.6306 37 1 6.3521 2.6515 0.8829 38 1 6.7877 2.3451 2.5813 39 1 4.9955 3.2252 5.3977 40 1 6.1209 2.5601 4.1896 41 1 6.6733 3.8150 5.3246 42 1 5.1275 6.5903 3.4353 43 1 7.5773 6.8111 3.4659 44 1 7.7524 5.4161 4.6147 45 1 8.6692 7.1219 6.2082 46 1 7.5242 6.0222 7.0131 47 1 8.7732 7.5215 8.8715 48 1 10.0097 8.4086 11.8421 49 1 5.7362 5.4008 6.2435 50 1 4.6372 6.7889 5.8413 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277570971.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:49 Heat of formation + Delta-G solvation = -72.676516 kcal Electronic energy + Delta-G solvation = -29039.209624 eV Core-core repulsion = 24874.981443 eV Total energy + Delta-G solvation = -4164.228181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.03284 -40.69606 -39.62999 -38.74473 -36.29132 -35.99807 -35.85767 -33.31436 -32.76505 -31.18997 -29.90774 -28.10688 -27.44755 -26.94084 -25.97610 -24.59092 -23.74845 -21.53540 -21.01131 -20.65014 -20.12671 -19.83788 -18.59878 -17.88106 -17.79815 -17.30669 -17.04632 -16.79487 -16.53316 -16.43922 -16.04435 -15.70113 -15.57991 -15.33099 -14.94174 -14.64131 -14.50193 -14.18938 -14.00263 -13.77075 -13.71092 -13.58886 -13.49622 -13.41450 -13.07173 -12.94264 -12.84041 -12.72740 -12.46552 -12.42143 -12.14479 -12.06226 -12.00921 -11.96823 -11.91241 -11.49947 -10.96803 -10.51978 -10.39232 -10.26561 -10.00425 -9.79074 -9.72848 -8.46571 -5.94889 1.32061 1.37575 1.41604 1.44684 1.53902 1.62064 2.06321 2.29091 2.69893 2.90984 3.19558 3.31979 3.36888 3.51069 3.69396 3.86097 3.99081 4.01942 4.06068 4.12984 4.15883 4.23704 4.25537 4.28303 4.36432 4.44139 4.46923 4.51399 4.55464 4.66450 4.68867 4.74889 4.76713 4.88573 4.91345 4.94376 5.03136 5.10410 5.23385 5.29405 5.36063 5.41533 5.72633 5.85784 5.86528 6.05565 6.07554 6.33378 6.61762 7.05964 7.14069 7.57320 8.14668 8.70715 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028314 B = 0.001636 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.678841 B =17113.098357 C =17253.014502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C -0.095 4.095 4 C 0.062 3.938 5 O -0.392 6.392 6 C 0.076 3.924 7 H 0.115 0.885 8 C -0.167 4.167 9 C 0.509 3.491 10 O -0.573 6.573 11 N -0.596 5.596 12 C 0.052 3.948 13 C 0.126 3.874 14 C -0.003 4.003 15 N -0.475 5.475 16 C 0.027 3.973 17 C 0.440 3.560 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.075 0.925 22 C -0.009 4.009 23 N -0.918 5.918 24 Si 0.990 3.010 25 H -0.270 1.270 26 H -0.269 1.269 27 H -0.276 1.276 28 C -0.001 4.001 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.093 0.907 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.099 0.901 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 -25.494 -17.054 31.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C -0.132 4.132 4 C -0.014 4.014 5 O -0.312 6.312 6 C 0.015 3.985 7 H 0.133 0.867 8 C -0.225 4.225 9 C 0.298 3.702 10 O -0.452 6.452 11 N -0.330 5.330 12 C -0.089 4.089 13 C 0.021 3.979 14 C -0.132 4.132 15 N -0.198 5.198 16 C -0.105 4.105 17 C 0.227 3.773 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.465 4.465 21 H 0.093 0.907 22 C -0.209 4.209 23 N -0.559 5.559 24 Si 0.814 3.186 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.201 1.201 28 C -0.131 4.131 29 H 0.110 0.890 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.129 0.871 46 H 0.111 0.889 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.117 0.883 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.195 -23.674 -17.620 30.376 hybrid contribution 0.276 -0.020 1.184 1.216 sum -6.920 -23.694 -16.436 29.655 Atomic orbital electron populations 1.24084 0.96120 1.02601 1.00075 1.22842 0.96048 0.97794 1.00788 1.20641 0.97790 0.96281 0.98482 1.22711 0.94224 0.85677 0.98816 1.88016 1.55018 1.39319 1.48813 1.22039 0.92749 0.91437 0.92295 0.86728 1.22290 0.94077 1.03072 1.03014 1.21203 0.76516 0.91928 0.80576 1.90700 1.49012 1.53225 1.52216 1.47802 1.59525 1.06680 1.18965 1.22373 1.02125 0.90904 0.93461 1.22389 0.96837 0.82850 0.95831 1.24386 0.96698 0.96708 0.95440 1.68706 1.05262 1.40552 1.05292 1.22366 0.99120 0.97224 0.91766 1.20836 0.84380 0.88348 0.83739 1.90506 1.35023 1.46360 1.78892 1.41908 1.32103 1.30261 1.16842 1.19630 1.17230 1.10573 0.99020 0.90731 1.25963 0.95312 1.00184 0.99481 1.69652 1.20837 1.37433 1.27986 0.84973 0.78054 0.77875 0.77704 1.19567 1.19390 1.20148 1.24359 0.96426 0.95995 0.96312 0.88991 0.86845 0.85401 0.92225 0.90375 0.90493 0.92407 0.88607 0.92723 0.88795 0.90777 0.87531 0.89379 0.87958 0.89161 0.87764 0.87052 0.88932 0.76865 0.91276 0.88313 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 14.32 67.78 0.97 -0.92 16 2 C -0.16 -1.54 9.52 25.65 0.24 -1.29 16 3 C -0.09 -1.26 6.03 29.85 0.18 -1.08 16 4 C 0.06 0.77 5.73 71.98 0.41 1.19 16 5 O -0.39 -8.00 9.56 -130.36 -1.25 -9.24 16 6 C 0.08 1.15 2.29 29.85 0.07 1.22 16 7 H 0.12 1.00 6.98 -2.39 -0.02 0.98 16 8 C -0.17 -1.62 9.15 71.98 0.66 -0.96 16 9 C 0.51 12.02 6.96 87.66 0.61 12.63 16 10 O -0.57 -20.00 16.07 15.60 0.25 -19.75 16 11 N -0.60 -11.37 3.11 -821.60 -2.56 -13.93 16 12 C 0.05 0.49 8.55 127.77 1.09 1.58 16 13 C 0.13 3.15 4.57 45.45 0.21 3.36 16 14 C 0.00 -0.07 7.24 83.57 0.60 0.54 16 15 N -0.48 -15.38 5.82 -932.57 -5.43 -20.81 16 16 C 0.03 0.88 5.30 85.56 0.45 1.33 16 17 C 0.44 21.06 7.85 87.65 0.69 21.75 16 18 O -0.62 -35.84 16.01 -3.08 -0.05 -35.89 16 19 N -0.57 -29.19 5.29 -306.99 -1.62 -30.82 16 20 C -0.33 -19.13 9.68 84.04 0.81 -18.31 16 21 H 0.07 4.60 7.16 -2.91 -0.02 4.58 16 22 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 23 N -0.92 -48.80 13.05 21.66 0.28 -48.52 16 24 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 27 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 28 C 0.00 -0.04 7.12 83.57 0.59 0.56 16 29 H 0.09 1.00 7.84 -2.91 -0.02 0.97 16 30 H 0.11 0.78 8.06 -2.91 -0.02 0.75 16 31 H 0.13 0.79 8.06 -2.91 -0.02 0.77 16 32 H 0.06 0.98 7.79 -2.39 -0.02 0.96 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 0.58 8.01 -2.39 -0.02 0.56 16 35 H 0.06 0.64 8.08 -2.39 -0.02 0.62 16 36 H 0.10 0.47 8.01 -2.38 -0.02 0.45 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.56 6.21 -2.39 -0.01 0.55 16 39 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.11 0.39 4.74 -2.39 -0.01 0.38 16 41 H 0.09 0.71 6.09 -2.39 -0.01 0.69 16 42 H 0.10 3.23 7.26 -2.38 -0.02 3.21 16 43 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.10 1.69 6.77 -2.39 -0.02 1.67 16 45 H 0.11 3.17 8.08 -2.38 -0.02 3.15 16 46 H 0.09 2.40 7.30 -2.39 -0.02 2.38 16 47 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 48 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 49 H 0.10 2.17 5.79 -2.39 -0.01 2.16 16 50 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -82.16 408.72 -0.07 -82.23 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.21 Total: 30.16 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 8.07 Total: 21.55 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -9.33 Total: -114.07 kcal Atomic # 8 Polarization: -63.83 SS G_CDS: -1.05 Total: -64.88 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -82.16 -0.07 -82.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277570971.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.553 kcal (2) G-P(sol) polarization free energy of solvation -82.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds