Wall clock time and date at job start Sat Apr 11 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 C 1.52996 * 109.47478 * 124.99802 * 3 2 1 5 5 O 1.42895 * 109.46982 * 179.97438 * 4 3 2 6 6 C 1.42901 * 113.99880 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47698 * 330.00250 * 6 5 4 8 8 C 1.53001 * 109.46557 * 90.00418 * 6 5 4 9 9 C 1.50706 * 109.47258 * 209.99916 * 6 5 4 10 10 O 1.21278 * 119.99635 * 0.02562 * 9 6 5 11 11 N 1.34778 * 119.99909 * 180.02562 * 9 6 5 12 12 C 1.47427 * 125.64694 * 0.03032 * 11 9 6 13 13 C 1.54912 * 104.82887 * 204.08814 * 12 11 9 14 14 C 1.55154 * 101.58410 * 322.99306 * 13 12 11 15 15 H 1.08997 * 110.71758 * 277.13876 * 14 13 12 16 16 N 1.46900 * 110.72504 * 154.04082 * 14 13 12 17 17 C 1.46904 * 110.99550 * 86.45062 * 16 14 13 18 18 C 1.50708 * 109.46700 * 180.02562 * 17 16 14 19 19 O 1.21294 * 120.00020 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99845 * 180.02562 * 18 17 16 21 21 C 1.37089 * 120.00071 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99988 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00222 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00402 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00119 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47178 * 89.99935 * 25 23 21 27 27 H 1.48499 * 109.47205 * 210.00094 * 25 23 21 28 28 H 1.48504 * 109.47075 * 330.00141 * 25 23 21 29 29 C 1.47016 * 125.64683 * 179.71855 * 11 9 6 30 30 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 32 32 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.46714 * 244.99836 * 3 2 1 34 34 H 1.09000 * 109.46958 * 4.99415 * 3 2 1 35 35 H 1.09002 * 109.47176 * 299.99751 * 4 3 2 36 36 H 1.09001 * 109.46898 * 60.00143 * 4 3 2 37 37 H 1.08996 * 109.47235 * 299.99611 * 8 6 5 38 38 H 1.08995 * 109.47715 * 60.00388 * 8 6 5 39 39 H 1.09006 * 109.46860 * 179.97438 * 8 6 5 40 40 H 1.09000 * 110.36586 * 322.92576 * 12 11 9 41 41 H 1.08998 * 110.36441 * 85.14327 * 12 11 9 42 42 H 1.09001 * 111.00118 * 81.06429 * 13 12 11 43 43 H 1.08998 * 111.00557 * 204.87831 * 13 12 11 44 44 H 1.00905 * 110.99771 * 322.50473 * 16 14 13 45 45 H 1.08996 * 109.47378 * 299.99786 * 17 16 14 46 46 H 1.08993 * 109.47004 * 60.00795 * 17 16 14 47 47 H 0.97003 * 120.00193 * 359.97438 * 20 18 17 48 48 H 0.96995 * 120.00739 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.88431 * 298.39841 * 29 11 9 50 50 H 1.09004 * 109.88323 * 59.56140 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 8 3.7500 2.5704 1.1812 6 6 4.6887 2.6997 2.2508 7 1 4.3358 2.1356 3.1142 8 6 6.0471 2.1542 1.8058 9 6 4.8287 4.1532 2.6235 10 8 4.1873 4.9953 2.0317 11 7 5.6666 4.5171 3.6145 12 6 6.5027 3.6017 4.4122 13 6 6.7641 4.3579 5.7387 14 6 6.9120 5.8197 5.2400 15 1 7.9245 6.0040 4.8809 16 7 6.5587 6.7699 6.3031 17 6 7.7178 7.0578 7.1584 18 6 7.3176 8.0334 8.2351 19 8 6.1787 8.4476 8.2853 20 7 8.2252 8.4455 9.1422 21 6 7.8610 9.3325 10.1220 22 1 6.8469 9.7014 10.1667 23 6 8.7966 9.7570 11.0575 24 7 8.4477 10.6077 11.9964 25 14 10.5504 9.1186 10.9806 26 1 11.3668 10.0161 10.1245 27 1 11.1247 9.0830 12.3496 28 1 10.5539 7.7489 10.4066 29 6 5.9029 5.8933 4.0745 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0044 32 1 1.8500 -0.9353 0.0004 33 1 2.6213 1.4025 -0.9314 34 1 1.3586 2.1317 0.0895 35 1 2.4772 1.2358 2.1130 36 1 3.7400 0.5066 1.0920 37 1 5.9459 1.1029 1.5362 38 1 6.4001 2.7183 0.9425 39 1 6.7633 2.2532 2.6215 40 1 5.9688 2.6711 4.6049 41 1 7.4419 3.3998 3.8972 42 1 5.9168 4.2606 6.4174 43 1 7.6828 4.0110 6.2117 44 1 5.7820 6.4287 6.8495 45 1 8.0687 6.1338 7.6179 46 1 8.5162 7.4896 6.5550 47 1 9.1359 8.1139 9.1023 48 1 9.1006 10.9038 12.6497 49 1 6.3157 6.4903 3.2613 50 1 4.9685 6.3333 4.4229 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317056166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:02 Heat of formation + Delta-G solvation = -111.295576 kcal Electronic energy + Delta-G solvation = -28685.407524 eV Core-core repulsion = 24519.504694 eV Total energy + Delta-G solvation = -4165.902829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44073 -40.32751 -39.41864 -38.45627 -36.25247 -36.02190 -35.63205 -33.74205 -32.99046 -31.37651 -30.16174 -29.68545 -27.89925 -26.05912 -25.12690 -24.06999 -23.41404 -21.92896 -21.29308 -20.88472 -20.38615 -20.26543 -18.44356 -17.98596 -17.64926 -17.10401 -17.07026 -16.86120 -16.70598 -16.43085 -15.88381 -15.57484 -15.27244 -14.99279 -14.90531 -14.82467 -14.46955 -14.45296 -14.13994 -13.92568 -13.75419 -13.65830 -13.55492 -13.37492 -13.09400 -12.94929 -12.81593 -12.67319 -12.49879 -12.39048 -12.26453 -12.05011 -11.98329 -11.95427 -11.75919 -11.49701 -11.03389 -10.54916 -10.43223 -10.28254 -10.23508 -9.75656 -9.30151 -8.39740 -6.01277 1.30815 1.31702 1.38594 1.47164 1.47713 1.63621 1.98123 2.25392 2.68503 2.82674 3.16864 3.29463 3.40050 3.60729 3.82510 3.84553 3.95659 4.00361 4.07069 4.14062 4.20305 4.24207 4.27959 4.32627 4.41967 4.45232 4.48775 4.58291 4.62510 4.70418 4.77592 4.82156 4.85036 4.88844 4.99374 5.02546 5.08665 5.11475 5.20715 5.22244 5.54257 5.70956 5.84427 5.92037 6.06270 6.08299 6.32885 6.42797 6.61344 6.89966 7.05527 7.41608 7.99234 8.78093 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030557 B = 0.001577 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.110280 B =17754.245427 C =18103.090578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C -0.094 4.094 4 C 0.062 3.938 5 O -0.393 6.393 6 C 0.079 3.921 7 H 0.112 0.888 8 C -0.170 4.170 9 C 0.518 3.482 10 O -0.581 6.581 11 N -0.613 5.613 12 C 0.095 3.905 13 C -0.161 4.161 14 C 0.087 3.913 15 H 0.119 0.881 16 N -0.683 5.683 17 C 0.067 3.933 18 C 0.445 3.555 19 O -0.619 6.619 20 N -0.589 5.589 21 C -0.331 4.331 22 H 0.052 0.948 23 C -0.016 4.016 24 N -0.937 5.937 25 Si 0.968 3.032 26 H -0.259 1.259 27 H -0.277 1.277 28 H -0.225 1.225 29 C 0.115 3.885 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.347 0.653 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.391 0.609 48 H 0.279 0.721 49 H 0.063 0.937 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.165 -30.455 -21.715 37.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C -0.132 4.132 4 C -0.014 4.014 5 O -0.312 6.312 6 C 0.019 3.981 7 H 0.130 0.870 8 C -0.227 4.227 9 C 0.307 3.693 10 O -0.461 6.461 11 N -0.348 5.348 12 C -0.026 4.026 13 C -0.201 4.201 14 C -0.023 4.023 15 H 0.137 0.863 16 N -0.315 5.315 17 C -0.065 4.065 18 C 0.233 3.767 19 O -0.504 6.504 20 N -0.231 5.231 21 C -0.460 4.460 22 H 0.070 0.930 23 C -0.214 4.214 24 N -0.577 5.577 25 Si 0.787 3.213 26 H -0.183 1.183 27 H -0.202 1.202 28 H -0.148 1.148 29 C -0.009 4.009 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.147 0.853 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.135 0.865 44 H 0.166 0.834 45 H 0.107 0.893 46 H 0.136 0.864 47 H 0.227 0.773 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.108 -28.925 -22.410 36.591 hybrid contribution 0.260 -0.062 1.126 1.158 sum 0.369 -28.986 -21.284 35.963 Atomic orbital electron populations 1.24086 0.96139 1.02605 1.00059 1.22843 0.96045 0.97784 1.00799 1.20642 0.97776 0.96291 0.98466 1.22705 0.94228 0.85661 0.98763 1.87997 1.55158 1.39492 1.48523 1.21937 0.92854 0.91107 0.92246 0.87033 1.22369 0.94117 1.02755 1.03455 1.20877 0.78139 0.91753 0.78571 1.90711 1.46936 1.54588 1.53822 1.48467 1.42517 1.09145 1.34655 1.22782 0.95959 0.93424 0.90465 1.23601 1.04411 0.94976 0.97068 1.22603 0.99072 0.90140 0.90496 0.86289 1.59854 1.07826 1.48238 1.15592 1.21640 0.94347 0.97623 0.92868 1.21116 0.85418 0.85650 0.84475 1.90564 1.22388 1.61279 1.76121 1.41996 1.12054 1.41749 1.27289 1.19005 0.98126 1.21649 1.07270 0.93018 1.26163 1.04559 0.96315 0.94408 1.69815 1.37704 1.33165 1.17037 0.85333 0.76221 0.80651 0.79083 1.18311 1.20209 1.14792 1.21798 0.99287 0.83130 0.96684 0.86783 0.89053 0.85309 0.90225 0.92336 0.92700 0.90357 0.88990 0.92764 0.88145 0.87974 0.87726 0.91016 0.86498 0.83373 0.89329 0.86380 0.77285 0.91182 0.91874 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 14.32 67.79 0.97 -0.98 16 2 C -0.16 -1.57 9.52 25.65 0.24 -1.33 16 3 C -0.09 -1.29 6.03 29.85 0.18 -1.11 16 4 C 0.06 0.82 5.73 71.98 0.41 1.23 16 5 O -0.39 -8.21 9.52 -129.94 -1.24 -9.45 16 6 C 0.08 1.25 2.49 29.85 0.07 1.32 16 7 H 0.11 1.12 7.49 -2.39 -0.02 1.10 16 8 C -0.17 -1.50 9.34 71.98 0.67 -0.83 16 9 C 0.52 12.66 7.29 87.66 0.64 13.30 16 10 O -0.58 -21.16 16.83 16.01 0.27 -20.89 16 11 N -0.61 -11.58 3.32 -811.76 -2.70 -14.28 16 12 C 0.10 0.81 5.14 86.86 0.45 1.26 16 13 C -0.16 -1.72 6.63 31.99 0.21 -1.51 16 14 C 0.09 1.53 3.22 46.11 0.15 1.67 16 15 H 0.12 1.59 7.89 -2.39 -0.02 1.57 16 16 N -0.68 -18.29 5.92 -489.43 -2.90 -21.19 16 17 C 0.07 1.79 6.02 85.56 0.52 2.30 16 18 C 0.45 19.29 7.82 87.66 0.69 19.98 16 19 O -0.62 -34.08 15.78 -3.07 -0.05 -34.13 16 20 N -0.59 -26.76 5.09 -306.98 -1.56 -28.32 16 21 C -0.33 -19.21 10.16 84.04 0.85 -18.36 16 22 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 24 N -0.94 -56.25 13.96 21.66 0.30 -55.94 16 25 Si 0.97 37.51 27.74 68.60 1.90 39.41 16 26 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 27 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 28 H -0.22 -7.03 6.52 99.48 0.65 -6.39 16 29 C 0.11 2.64 6.64 86.73 0.58 3.21 16 30 H 0.11 0.80 8.06 -2.91 -0.02 0.78 16 31 H 0.09 1.03 7.84 -2.91 -0.02 1.01 16 32 H 0.13 0.80 8.06 -2.91 -0.02 0.78 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.00 7.79 -2.39 -0.02 0.98 16 35 H 0.05 0.66 8.08 -2.39 -0.02 0.65 16 36 H 0.08 0.60 7.87 -2.39 -0.02 0.58 16 37 H 0.09 0.44 7.87 -2.39 -0.02 0.42 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 0.41 4.99 -2.38 -0.01 0.40 16 40 H 0.10 0.42 7.36 -2.39 -0.02 0.40 16 41 H 0.10 0.38 7.06 -2.39 -0.02 0.37 16 42 H 0.07 0.96 7.82 -2.39 -0.02 0.94 16 43 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.35 10.25 8.00 -89.69 -0.72 9.53 16 45 H 0.09 1.70 8.13 -2.39 -0.02 1.68 16 46 H 0.12 2.55 8.08 -2.39 -0.02 2.53 16 47 H 0.39 14.28 5.76 -92.71 -0.53 13.75 16 48 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 49 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.05 1.39 8.03 -2.39 -0.02 1.37 16 Total: -1.00 -90.21 409.19 0.76 -89.44 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: -0.36 Total: 35.60 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 7.10 Total: 19.75 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -6.85 Total: -119.73 kcal Atomic # 8 Polarization: -63.45 SS G_CDS: -1.02 Total: -64.47 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 1.90 Total: 39.41 kcal Total: -90.21 0.76 -89.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317056166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.852 kcal (2) G-P(sol) polarization free energy of solvation -90.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds