Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47444 * 2 1 4 4 O 1.42902 * 109.47278 * 119.99807 * 2 1 3 5 5 C 1.42899 * 113.99922 * 270.00621 * 4 2 1 6 6 C 1.52999 * 109.47165 * 179.97438 * 5 4 2 7 7 C 1.52998 * 117.50007 * 243.74567 * 6 5 4 8 8 C 1.52992 * 117.50068 * 175.08427 * 6 5 4 9 9 C 1.50706 * 109.47571 * 239.99807 * 2 1 3 10 10 O 1.21274 * 120.00110 * 245.00501 * 9 2 1 11 11 N 1.34773 * 119.99486 * 64.99938 * 9 2 1 12 12 C 1.46503 * 119.99692 * 180.02562 * 11 9 2 13 13 H 1.08997 * 112.85324 * 23.79970 * 12 11 9 14 14 C 1.53780 * 113.61588 * 155.00201 * 12 11 9 15 15 C 1.53779 * 87.08279 * 140.06367 * 14 12 11 16 16 H 1.09006 * 113.61747 * 89.19934 * 15 14 12 17 17 N 1.46905 * 113.61397 * 220.01849 * 15 14 12 18 18 C 1.46901 * 110.99870 * 203.47133 * 17 15 14 19 19 C 1.50697 * 109.46943 * 180.02562 * 18 17 15 20 20 O 1.21292 * 120.00024 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99767 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99759 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00171 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00074 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99768 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00310 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47134 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47103 * 120.00017 * 26 24 22 29 29 H 1.48494 * 109.47266 * 240.00436 * 26 24 22 30 30 C 1.53778 * 87.17459 * 334.60833 * 15 14 12 31 31 H 1.09000 * 109.47068 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47638 * 300.00268 * 1 2 3 33 33 H 1.09008 * 109.46838 * 60.00546 * 1 2 3 34 34 H 1.09006 * 109.47029 * 299.99270 * 5 4 2 35 35 H 1.08999 * 109.47271 * 59.99330 * 5 4 2 36 36 H 1.09006 * 115.54669 * 29.41145 * 6 5 4 37 37 H 1.09005 * 117.49426 * 359.97438 * 7 6 5 38 38 H 1.09000 * 117.50610 * 145.01848 * 7 6 5 39 39 H 1.09006 * 117.50448 * 214.97706 * 8 6 5 40 40 H 1.08999 * 117.50080 * 359.97341 * 8 6 5 41 41 H 0.97001 * 120.00863 * 0.02562 * 11 9 2 42 42 H 1.09000 * 113.61878 * 25.51200 * 14 12 11 43 43 H 1.09001 * 113.61492 * 254.61025 * 14 12 11 44 44 H 1.00901 * 110.99869 * 79.51844 * 17 15 14 45 45 H 1.09004 * 109.47031 * 299.99620 * 18 17 15 46 46 H 1.08995 * 109.47111 * 59.99900 * 18 17 15 47 47 H 0.96997 * 120.00713 * 359.97438 * 21 19 18 48 48 H 0.96999 * 119.99907 * 179.97438 * 25 24 22 49 49 H 1.08996 * 113.61750 * 139.93718 * 30 15 14 50 50 H 1.09003 * 113.61557 * 270.84524 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7078 -0.6407 3.4792 7 6 1.8105 -0.7276 4.7154 8 6 3.0876 0.1154 4.7539 9 6 2.0324 -0.7105 -1.2304 10 8 2.6530 -1.7467 -1.1214 11 7 1.7920 -0.1942 -2.4519 12 6 2.2799 -0.8851 -3.6481 13 1 2.4405 -1.9508 -3.4855 14 6 1.4676 -0.5708 -4.9155 15 6 2.8067 -0.5387 -5.6709 16 1 3.1106 -1.5096 -6.0625 17 7 2.8918 0.5325 -6.6726 18 6 3.8809 0.2069 -7.7087 19 6 3.9405 1.3264 -8.7158 20 8 3.2286 2.2995 -8.5836 21 7 4.7840 1.2459 -9.7638 22 6 4.8378 2.2641 -10.6802 23 1 4.2039 3.1306 -10.5626 24 6 5.7079 2.1814 -11.7604 25 7 6.4788 1.1269 -11.9039 26 14 5.7807 3.5685 -13.0095 27 1 4.8196 4.6328 -12.6239 28 1 7.1543 4.1315 -13.0445 29 1 5.4263 3.0440 -14.3528 30 6 3.4679 -0.1813 -4.3293 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.9319 0.9514 2.0451 35 1 1.2537 0.6547 2.5588 36 1 3.2967 -1.5211 3.2219 37 1 0.8585 -0.1976 4.6844 38 1 1.8092 -1.6650 5.2716 39 1 3.9261 -0.2678 5.3356 40 1 2.9761 1.1996 4.7482 41 1 1.2959 0.6348 -2.5392 42 1 0.9620 0.3942 -4.8820 43 1 0.8107 -1.3834 -5.2258 44 1 3.1019 1.4184 -6.2377 45 1 4.8609 0.0802 -7.2485 46 1 3.5922 -0.7174 -8.2091 47 1 5.3531 0.4676 -9.8698 48 1 7.0859 1.0689 -12.6582 49 1 4.4234 -0.6799 -4.1668 50 1 3.5101 0.8904 -4.1351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317107403.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = -98.537072 kcal Electronic energy + Delta-G solvation = -28131.180877 eV Core-core repulsion = 23965.831298 eV Total energy + Delta-G solvation = -4165.349579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37390 -40.31849 -39.73459 -38.95021 -37.43364 -36.12040 -35.47627 -33.93428 -33.21988 -32.03175 -28.44375 -28.06862 -26.63588 -26.33399 -25.39906 -23.45048 -23.23174 -21.81961 -21.52411 -21.20590 -20.66456 -19.87984 -18.38552 -18.15983 -17.80818 -17.27570 -16.90728 -16.50690 -16.38063 -16.31768 -16.00349 -15.94812 -15.68180 -15.27436 -15.02462 -14.78866 -14.45079 -14.29692 -13.90716 -13.70437 -13.52891 -13.42750 -13.36624 -13.19863 -13.12560 -12.83524 -12.67886 -12.40557 -12.39975 -12.16720 -12.11905 -11.98905 -11.91707 -11.77995 -11.50678 -11.44380 -11.32859 -10.80596 -10.42085 -10.32137 -10.07533 -10.00916 -9.23475 -8.46364 -5.95144 1.37153 1.42543 1.52005 1.56690 1.80535 2.05837 2.29726 2.68743 2.94290 3.01971 3.21168 3.44994 3.57968 3.66583 3.73868 3.84270 3.92313 3.93283 3.97050 4.00655 4.03089 4.15037 4.30903 4.33934 4.45418 4.48469 4.54493 4.64247 4.66970 4.70500 4.76757 4.78491 4.79903 4.81246 4.99641 5.00139 5.08702 5.11357 5.18588 5.21862 5.23185 5.41669 5.53703 5.93130 6.09420 6.14799 6.42739 6.55055 6.60492 7.13070 7.20458 7.56941 8.11801 8.71235 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.001411 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.207710 B =19844.769544 C =20108.822387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.070 3.930 3 H 0.114 0.886 4 O -0.388 6.388 5 C 0.089 3.911 6 C -0.176 4.176 7 C -0.174 4.174 8 C -0.163 4.163 9 C 0.510 3.490 10 O -0.575 6.575 11 N -0.700 5.700 12 C 0.128 3.872 13 H 0.101 0.899 14 C -0.119 4.119 15 C 0.067 3.933 16 H 0.108 0.892 17 N -0.665 5.665 18 C 0.063 3.937 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.271 1.271 30 C -0.176 4.176 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.417 0.583 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.347 0.653 45 H 0.065 0.935 46 H 0.104 0.896 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.065 0.935 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 -2.865 29.831 31.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 H 0.132 0.868 4 O -0.307 6.307 5 C 0.013 3.987 6 C -0.195 4.195 7 C -0.211 4.211 8 C -0.199 4.199 9 C 0.297 3.703 10 O -0.453 6.453 11 N -0.353 5.353 12 C 0.022 3.978 13 H 0.119 0.881 14 C -0.158 4.158 15 C -0.044 4.044 16 H 0.126 0.874 17 N -0.296 5.296 18 C -0.069 4.069 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.098 0.902 24 C -0.212 4.212 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.197 1.197 30 C -0.217 4.217 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.255 0.745 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.167 0.833 45 H 0.082 0.918 46 H 0.122 0.878 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.084 0.916 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.815 -3.431 29.484 31.592 hybrid contribution 1.308 0.656 -0.482 1.540 sum -9.507 -2.775 29.002 30.646 Atomic orbital electron populations 1.22226 0.91488 1.03392 1.05090 1.22052 0.96476 0.96749 0.83812 0.86847 1.88018 1.86909 1.35835 1.19901 1.22269 1.00222 0.91749 0.84427 1.22122 1.05428 1.02662 0.89270 1.23172 0.95491 1.02533 0.99922 1.23080 0.99287 0.99518 0.98056 1.21031 0.78718 0.84960 0.85619 1.90700 1.41794 1.25656 1.87181 1.45795 1.57232 1.27858 1.04412 1.22267 0.95162 0.97377 0.82975 0.88060 1.23377 0.96627 1.03634 0.92139 1.22945 0.97328 0.95466 0.88669 0.87406 1.60046 1.50076 1.05402 1.14043 1.21588 0.95812 0.96693 0.92802 1.20907 0.82505 0.89676 0.84415 1.90484 1.46309 1.36262 1.77879 1.41951 1.36563 1.20339 1.22244 1.19721 1.22245 1.00270 1.04117 0.90237 1.26039 0.95181 1.00323 0.99699 1.69682 1.24782 1.29649 1.32079 0.84869 0.78262 0.77636 0.77566 1.19682 1.19660 1.19665 1.24226 0.98722 1.01722 0.97021 0.92759 0.89498 0.88684 0.92036 0.90946 0.88914 0.87578 0.88488 0.87926 0.87273 0.74517 0.88344 0.89697 0.83322 0.91752 0.87771 0.77008 0.91333 0.91619 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 71.98 0.68 -0.85 16 2 C 0.07 1.02 3.13 29.85 0.09 1.11 16 3 H 0.11 0.98 7.79 -2.38 -0.02 0.96 16 4 O -0.39 -7.84 9.53 -129.99 -1.24 -9.07 16 5 C 0.09 1.18 6.03 71.98 0.43 1.61 16 6 C -0.18 -2.47 6.05 -10.80 -0.07 -2.53 16 7 C -0.17 -1.77 10.18 30.62 0.31 -1.46 16 8 C -0.16 -1.50 10.25 30.62 0.31 -1.19 16 9 C 0.51 10.71 7.18 87.66 0.63 11.34 16 10 O -0.57 -18.29 16.11 15.98 0.26 -18.03 16 11 N -0.70 -10.78 5.32 -439.75 -2.34 -13.12 16 12 C 0.13 2.33 4.24 45.58 0.19 2.52 16 13 H 0.10 2.21 7.46 -2.39 -0.02 2.19 16 14 C -0.12 -2.05 7.63 31.12 0.24 -1.81 16 15 C 0.07 1.42 4.16 45.44 0.19 1.61 16 16 H 0.11 2.16 7.88 -2.38 -0.02 2.14 16 17 N -0.66 -19.48 6.24 -492.85 -3.07 -22.56 16 18 C 0.06 2.11 6.02 85.56 0.52 2.63 16 19 C 0.44 20.54 7.82 87.66 0.69 21.23 16 20 O -0.62 -33.96 15.78 -3.07 -0.05 -34.01 16 21 N -0.57 -29.31 5.29 -306.99 -1.62 -30.93 16 22 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 25 N -0.92 -49.67 13.05 21.66 0.28 -49.39 16 26 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 29 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 30 C -0.18 -3.46 7.52 31.18 0.23 -3.22 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.53 7.87 -2.39 -0.02 0.51 16 33 H 0.09 0.47 7.93 -2.38 -0.02 0.45 16 34 H 0.06 0.69 8.09 -2.38 -0.02 0.67 16 35 H 0.07 0.63 7.60 -2.39 -0.02 0.61 16 36 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.11 0.83 8.03 -2.38 -0.02 0.81 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.42 3.75 8.51 -92.71 -0.79 2.96 16 42 H 0.10 1.61 8.12 -2.39 -0.02 1.59 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.35 10.60 7.91 -89.69 -0.71 9.90 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.10 3.14 8.13 -2.39 -0.02 3.12 16 47 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 48 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 49 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.09 1.73 7.83 -2.39 -0.02 1.71 16 Total: -1.00 -76.90 418.70 -1.29 -78.19 By element: Atomic # 1 Polarization: 42.75 SS G_CDS: -1.26 Total: 41.49 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 5.73 Total: 12.65 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -6.76 Total: -116.00 kcal Atomic # 8 Polarization: -60.08 SS G_CDS: -1.03 Total: -61.11 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -76.90 -1.29 -78.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317107403.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.346 kcal (2) G-P(sol) polarization free energy of solvation -76.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds