Wall clock time and date at job start Sat Apr 11 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09001 * 109.47377 * 330.00266 * 3 2 1 5 5 C 1.53005 * 109.47197 * 90.00111 * 3 2 1 6 6 C 1.50706 * 109.47222 * 209.99898 * 3 2 1 7 7 O 1.21281 * 119.99657 * 0.02562 * 6 3 2 8 8 N 1.34779 * 120.00089 * 179.97438 * 6 3 2 9 9 C 1.47170 * 135.99401 * 359.63653 * 8 6 3 10 10 C 1.52571 * 87.95277 * 206.65834 * 9 8 6 11 11 C 1.47179 * 135.98881 * 180.02562 * 8 6 3 12 12 C 1.52597 * 113.99774 * 88.36980 * 10 9 8 13 13 C 1.53249 * 109.01123 * 186.32655 * 12 10 9 14 14 N 1.46844 * 109.42044 * 303.38669 * 13 12 10 15 15 C 1.46900 * 110.99781 * 187.90004 * 14 13 12 16 16 C 1.50707 * 109.46735 * 65.43263 * 15 14 13 17 17 O 1.21292 * 120.00152 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99902 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99963 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00195 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00053 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00090 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99938 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47192 * 89.99919 * 23 21 19 25 25 H 1.48503 * 109.47016 * 209.99724 * 23 21 19 26 26 H 1.48496 * 109.47114 * 329.99655 * 23 21 19 27 27 C 1.46838 * 111.47281 * 63.60571 * 14 13 12 28 28 C 1.52592 * 114.36611 * 220.64581 * 10 9 8 29 29 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46766 * 299.99641 * 5 3 2 33 33 H 1.09001 * 109.46830 * 59.99820 * 5 3 2 34 34 H 1.09006 * 109.46899 * 179.97438 * 5 3 2 35 35 H 1.09000 * 113.49123 * 321.35468 * 9 8 6 36 36 H 1.09002 * 113.48745 * 91.86209 * 9 8 6 37 37 H 1.08997 * 113.48874 * 268.14088 * 11 8 6 38 38 H 1.08998 * 113.49354 * 38.65982 * 11 8 6 39 39 H 1.08993 * 109.54799 * 306.18302 * 12 10 9 40 40 H 1.08997 * 109.54624 * 66.46766 * 12 10 9 41 41 H 1.08993 * 109.47829 * 183.40514 * 13 12 10 42 42 H 1.09000 * 109.47786 * 63.36993 * 13 12 10 43 43 H 1.08993 * 109.46970 * 185.42516 * 15 14 13 44 44 H 1.08998 * 109.47452 * 305.43696 * 15 14 13 45 45 H 0.96999 * 119.99635 * 359.97438 * 18 16 15 46 46 H 0.97008 * 119.99915 * 179.97438 * 22 21 19 47 47 H 1.09005 * 109.47475 * 176.40749 * 27 14 13 48 48 H 1.08993 * 109.49328 * 56.38368 * 27 14 13 49 49 H 1.08997 * 109.54701 * 293.70526 * 28 10 9 50 50 H 1.09001 * 109.54604 * 53.89665 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7104 7 8 3.7472 0.2194 -1.1717 8 7 4.0721 2.3880 -0.8340 9 6 3.9258 3.7968 -0.4343 10 6 4.8295 4.1663 -1.6067 11 6 5.3675 2.7459 -1.4339 12 6 4.0827 4.3961 -2.9175 13 6 5.1019 4.6019 -4.0433 14 7 5.9899 5.7198 -3.6996 15 6 6.8585 6.0693 -4.8316 16 6 6.0179 6.5976 -5.9653 17 8 4.8137 6.6748 -5.8426 18 7 6.6042 6.9841 -7.1156 19 6 5.8394 7.4642 -8.1472 20 1 4.7671 7.5331 -8.0380 21 6 6.4439 7.8633 -9.3330 22 7 5.7108 8.3230 -10.3219 23 14 8.2986 7.7450 -9.5217 24 1 8.6558 6.4149 -10.0773 25 1 8.7712 8.8094 -10.4431 26 1 8.9431 7.9166 -8.1950 27 6 6.7827 5.4269 -2.4988 28 6 5.8458 5.2616 -1.2974 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2568 1.8015 1.9563 33 1 2.8829 1.0775 1.9563 34 1 2.6613 2.7671 1.4425 35 1 2.9083 4.1739 -0.5363 36 1 4.3634 4.0199 0.5388 37 1 6.2025 2.6794 -0.7365 38 1 5.5643 2.2381 -2.3781 39 1 3.4628 3.5279 -3.1411 40 1 3.4538 5.2819 -2.8285 41 1 4.5773 4.8267 -4.9718 42 1 5.6922 3.6943 -4.1695 43 1 7.5707 6.8335 -4.5206 44 1 7.3987 5.1823 -5.1625 45 1 7.5673 6.9227 -7.2136 46 1 6.1329 8.6020 -11.1496 47 1 7.4739 6.2485 -2.3104 48 1 7.3455 4.5059 -2.6503 49 1 5.3246 6.2003 -1.1095 50 1 6.4251 4.9835 -0.4169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326574635.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:34 Heat of formation + Delta-G solvation = -88.586569 kcal Electronic energy + Delta-G solvation = -30209.610087 eV Core-core repulsion = 26044.691994 eV Total energy + Delta-G solvation = -4164.918093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22341 -40.60394 -40.00490 -38.49545 -37.79007 -35.92832 -33.86669 -33.65280 -32.43591 -31.86129 -29.63079 -27.80054 -27.68080 -27.17212 -25.74360 -24.53241 -24.27691 -22.59676 -21.24672 -20.48206 -20.19016 -19.23163 -18.36495 -17.87806 -17.70211 -17.21733 -16.87257 -16.63280 -16.47136 -16.29295 -16.08927 -15.52523 -15.45406 -15.14088 -15.07557 -14.92496 -14.51973 -14.38657 -13.98922 -13.95080 -13.77339 -13.58174 -13.44776 -13.30957 -13.17845 -12.94044 -12.83910 -12.75303 -12.47982 -12.40520 -12.19044 -12.05840 -11.97238 -11.66279 -11.50744 -11.34062 -11.23737 -11.00642 -10.52796 -10.29966 -10.20238 -9.78226 -9.12306 -8.40166 -6.00363 1.30168 1.35743 1.43893 1.44501 1.58518 1.98949 2.23560 2.67366 2.81568 3.15980 3.16582 3.30453 3.38777 3.71283 3.83120 3.88009 3.98339 4.05101 4.15256 4.28598 4.33290 4.38621 4.40904 4.44466 4.49366 4.51958 4.56780 4.58907 4.62960 4.65855 4.70931 4.74729 4.80915 4.81762 4.83434 4.94111 5.07274 5.13502 5.15753 5.22527 5.28695 5.44911 5.55090 5.93261 6.03831 6.08396 6.33098 6.61870 6.63640 6.90726 7.02989 7.42464 8.00276 8.77518 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021074 B = 0.002145 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.333247 B =13050.560923 C =13650.107920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.075 3.925 4 H 0.105 0.895 5 C -0.161 4.161 6 C 0.532 3.468 7 O -0.586 6.586 8 N -0.644 5.644 9 C 0.113 3.887 10 C -0.085 4.085 11 C 0.108 3.892 12 C -0.076 4.076 13 C 0.059 3.941 14 N -0.532 5.532 15 C 0.054 3.946 16 C 0.451 3.549 17 O -0.603 6.603 18 N -0.595 5.595 19 C -0.324 4.324 20 H 0.055 0.945 21 C -0.018 4.018 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.260 1.260 25 H -0.275 1.275 26 H -0.229 1.229 27 C 0.051 3.949 28 C -0.086 4.086 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.112 0.888 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.024 0.976 43 H 0.124 0.876 44 H 0.071 0.929 45 H 0.389 0.611 46 H 0.278 0.722 47 H 0.095 0.905 48 H 0.040 0.960 49 H 0.083 0.917 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 -8.915 28.521 29.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C 0.014 3.986 4 H 0.123 0.877 5 C -0.218 4.218 6 C 0.322 3.678 7 O -0.465 6.465 8 N -0.380 5.380 9 C -0.008 4.008 10 C -0.086 4.086 11 C -0.014 4.014 12 C -0.114 4.114 13 C -0.069 4.069 14 N -0.258 5.258 15 C -0.077 4.077 16 C 0.238 3.762 17 O -0.487 6.487 18 N -0.237 5.237 19 C -0.453 4.453 20 H 0.073 0.927 21 C -0.216 4.216 22 N -0.577 5.577 23 Si 0.784 3.216 24 H -0.185 1.185 25 H -0.201 1.201 26 H -0.152 1.152 27 C -0.076 4.076 28 C -0.124 4.124 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.142 0.858 44 H 0.088 0.912 45 H 0.224 0.776 46 H 0.088 0.912 47 H 0.113 0.887 48 H 0.058 0.942 49 H 0.101 0.899 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.100 -9.316 28.309 29.802 hybrid contribution 0.776 -0.633 -1.630 1.914 sum 0.877 -9.949 26.678 28.487 Atomic orbital electron populations 1.23090 0.78543 1.04242 1.01417 1.87990 1.22024 1.26550 1.95209 1.21991 0.91666 0.86699 0.98270 0.87719 1.22217 1.04394 1.02577 0.92646 1.20645 0.86687 0.81410 0.79060 1.90693 1.73347 1.31645 1.50857 1.49651 1.21762 1.09061 1.57511 1.23344 1.02044 0.76416 0.99022 1.21662 0.97380 0.94378 0.95187 1.23245 0.87128 0.92871 0.98202 1.21089 0.96721 1.00972 0.92621 1.22052 0.95187 0.90541 0.99164 1.61376 1.20919 1.39573 1.03907 1.21814 0.94259 1.01712 0.89901 1.20975 0.89029 0.82014 0.84138 1.90512 1.17100 1.58835 1.82281 1.42069 1.08834 1.59447 1.13341 1.18977 0.92519 1.40672 0.93173 0.92694 1.26117 1.05351 0.95951 0.94202 1.69808 1.38708 1.43502 1.05680 0.85372 0.76587 0.79178 0.80431 1.18506 1.20052 1.15214 1.22311 0.95335 1.00914 0.89011 1.21432 0.95763 0.97879 0.97369 0.93347 0.91444 0.88522 0.89231 0.92523 0.88755 0.88724 0.85471 0.87008 0.93104 0.92990 0.90964 0.92775 0.95762 0.85820 0.91163 0.77606 0.91244 0.88671 0.94154 0.89864 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.53 16 2 O -0.40 -9.08 9.88 -129.94 -1.28 -10.36 16 3 C 0.07 1.34 3.01 29.85 0.09 1.43 16 4 H 0.11 1.44 7.79 -2.39 -0.02 1.42 16 5 C -0.16 -1.72 9.41 71.98 0.68 -1.05 16 6 C 0.53 13.50 7.48 87.66 0.66 14.16 16 7 O -0.59 -21.52 17.27 16.01 0.28 -21.24 16 8 N -0.64 -12.06 3.43 -858.71 -2.95 -15.00 16 9 C 0.11 1.15 5.89 83.23 0.49 1.65 16 10 C -0.09 -1.28 0.85 -52.63 -0.04 -1.33 16 11 C 0.11 1.87 7.67 83.33 0.64 2.51 16 12 C -0.08 -1.82 5.27 30.54 0.16 -1.66 16 13 C 0.06 1.78 5.09 86.40 0.44 2.22 16 14 N -0.53 -14.66 4.35 -900.10 -3.92 -18.58 16 15 C 0.05 1.61 5.45 85.56 0.47 2.08 16 16 C 0.45 20.08 7.44 87.66 0.65 20.73 16 17 O -0.60 -32.79 13.89 -3.07 -0.04 -32.83 16 18 N -0.59 -27.94 5.09 -306.98 -1.56 -29.51 16 19 C -0.32 -18.99 10.16 84.04 0.85 -18.14 16 20 H 0.05 3.84 7.39 -2.91 -0.02 3.81 16 21 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 22 N -0.94 -56.76 13.96 21.66 0.30 -56.45 16 23 Si 0.96 38.90 27.74 68.60 1.90 40.80 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 27 C 0.05 0.86 5.45 86.40 0.47 1.33 16 28 C -0.09 -1.00 5.35 30.54 0.16 -0.84 16 29 H 0.05 0.60 8.09 -2.39 -0.02 0.58 16 30 H 0.07 0.56 7.87 -2.39 -0.02 0.54 16 31 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.09 0.63 7.87 -2.39 -0.02 0.61 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.59 6.33 -2.38 -0.02 0.57 16 35 H 0.09 0.79 8.10 -2.39 -0.02 0.77 16 36 H 0.13 0.46 8.03 -2.39 -0.02 0.44 16 37 H 0.11 1.37 8.01 -2.39 -0.02 1.35 16 38 H 0.05 1.17 7.77 -2.39 -0.02 1.16 16 39 H 0.05 1.35 7.95 -2.39 -0.02 1.33 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 2.21 5.73 -2.39 -0.01 2.19 16 42 H 0.02 0.71 7.81 -2.39 -0.02 0.69 16 43 H 0.12 2.89 7.96 -2.39 -0.02 2.88 16 44 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 45 H 0.39 15.10 5.76 -92.71 -0.53 14.57 16 46 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 47 H 0.09 1.29 7.97 -2.38 -0.02 1.27 16 48 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.11 0.54 8.02 -2.39 -0.02 0.52 16 Total: -1.00 -89.81 396.79 0.48 -89.33 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.34 Total: 29.75 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 7.41 Total: 24.09 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -8.13 Total: -119.55 kcal Atomic # 8 Polarization: -63.38 SS G_CDS: -1.05 Total: -64.43 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 1.90 Total: 40.80 kcal Total: -89.81 0.48 -89.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326574635.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.746 kcal (2) G-P(sol) polarization free energy of solvation -89.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds