Wall clock time and date at job start Sat Apr 11 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47471 * 2 1 4 4 C 1.34778 * 120.00054 * 274.07200 * 3 2 1 5 5 O 1.21355 * 120.00200 * 185.21849 * 4 3 2 6 6 C 1.49453 * 119.99840 * 5.21997 * 4 3 2 7 7 O 1.21347 * 120.00222 * 5.50001 * 6 4 3 8 8 N 1.34777 * 120.00162 * 185.49709 * 6 4 3 9 9 C 1.47424 * 125.64478 * 0.02562 * 8 6 4 10 10 C 1.54909 * 104.83430 * 204.08918 * 9 8 6 11 11 C 1.55162 * 101.57988 * 322.99312 * 10 9 8 12 12 O 1.42889 * 110.72054 * 277.13427 * 11 10 9 13 13 C 1.50706 * 110.71789 * 154.03911 * 11 10 9 14 14 H 1.07999 * 119.99877 * 359.97438 * 13 11 10 15 15 C 1.37875 * 119.99896 * 179.97438 * 13 11 10 16 16 N 1.31511 * 119.99919 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00095 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46614 * 60.00151 * 17 15 13 19 19 H 1.48492 * 109.46911 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46786 * 300.00386 * 17 15 13 21 21 C 1.47019 * 125.65236 * 179.71967 * 8 6 4 22 22 C 1.46500 * 120.00410 * 94.06918 * 3 2 1 23 23 H 1.09000 * 110.36144 * 2.18462 * 22 3 2 24 24 C 1.54259 * 110.32758 * 240.00636 * 22 3 2 25 25 C 1.54385 * 105.05905 * 241.10090 * 24 22 3 26 26 N 1.48560 * 104.69760 * 336.08833 * 25 24 22 27 27 C 1.46898 * 111.00128 * 159.10167 * 26 25 24 28 28 C 1.48850 * 104.07739 * 39.46722 * 26 25 24 29 29 H 1.09000 * 109.46513 * 300.00164 * 1 2 3 30 30 H 1.09000 * 109.47116 * 59.99807 * 1 2 3 31 31 H 1.08997 * 109.47077 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47037 * 239.99878 * 2 1 3 33 33 H 1.09000 * 109.47116 * 120.00193 * 2 1 3 34 34 H 1.08999 * 110.37192 * 322.93219 * 9 8 6 35 35 H 1.09003 * 110.36810 * 85.25480 * 9 8 6 36 36 H 1.09004 * 111.00582 * 81.06599 * 10 9 8 37 37 H 1.08994 * 111.01014 * 204.88445 * 10 9 8 38 38 H 0.96703 * 114.00213 * 179.97438 * 12 11 10 39 39 H 0.96996 * 120.00304 * 180.02562 * 16 15 13 40 40 H 1.09009 * 109.87897 * 298.39522 * 21 8 6 41 41 H 1.09000 * 109.88140 * 59.55512 * 21 8 6 42 42 H 1.08991 * 110.32675 * 122.20259 * 24 22 3 43 43 H 1.08998 * 110.32062 * 359.97438 * 24 22 3 44 44 H 1.09000 * 110.40878 * 94.92142 * 25 24 22 45 45 H 1.08987 * 110.40884 * 217.24490 * 25 24 22 46 46 H 1.08993 * 109.47122 * 59.86846 * 27 26 25 47 47 H 1.08998 * 109.47210 * 179.87339 * 27 26 25 48 48 H 1.09005 * 109.46639 * 299.86950 * 27 26 25 49 49 H 1.09001 * 110.39440 * 201.75714 * 28 26 25 50 50 H 1.09000 * 110.39755 * 79.33925 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1649 2.0441 -1.1643 5 8 2.6580 3.1529 -1.1733 6 6 1.7201 1.4137 -2.4442 7 8 1.1371 0.3496 -2.4260 8 7 1.9665 2.0270 -3.6188 9 6 2.6621 3.3161 -3.7856 10 6 2.1598 3.8650 -5.1443 11 6 2.0499 2.5649 -5.9840 12 8 3.3210 2.2062 -6.5292 13 6 1.0273 2.7227 -7.0797 14 1 0.4913 3.6540 -7.1881 15 6 0.7759 1.6781 -7.9438 16 7 1.4282 0.5438 -7.8115 17 14 -0.4921 1.8734 -9.3015 18 1 -0.0923 2.9900 -10.1952 19 1 -0.5745 0.6156 -10.0864 20 1 -1.8178 2.1699 -8.7016 21 6 1.5916 1.5184 -4.9463 22 6 2.3475 2.0418 1.2655 23 1 2.2087 1.3541 2.0997 24 6 1.4743 3.2990 1.4566 25 6 2.4731 4.4742 1.5267 26 7 3.7502 3.8576 1.9693 27 6 4.8950 4.7090 1.6195 28 6 3.8003 2.5630 1.2363 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.3952 3.9985 -2.9787 35 1 3.7411 3.1641 -3.8136 36 1 1.1865 4.3439 -5.0365 37 1 2.8848 4.5522 -5.5803 38 1 3.3069 1.3997 -7.0626 39 1 1.2517 -0.1910 -8.4195 40 1 2.0889 0.5664 -5.1325 41 1 0.5105 1.3916 -5.0029 42 1 0.9070 3.2285 2.3845 43 1 0.8012 3.4248 0.6086 44 1 2.5920 4.9311 0.5443 45 1 2.1375 5.2155 2.2518 46 1 4.7871 5.6796 2.1035 47 1 5.8168 4.2352 1.9569 48 1 4.9304 4.8440 0.5384 49 1 4.4651 1.8644 1.7443 50 1 4.1270 2.7209 0.2085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327399539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:42 Heat of formation + Delta-G solvation = -83.680148 kcal Electronic energy + Delta-G solvation = -32011.390032 eV Core-core repulsion = 27846.684697 eV Total energy + Delta-G solvation = -4164.705335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00493 -39.23593 -37.81009 -37.30828 -35.90267 -34.21860 -32.21529 -32.02576 -30.24517 -30.04507 -28.57164 -27.95521 -26.16835 -25.44626 -24.14823 -22.95821 -22.16949 -21.33632 -20.63133 -19.59959 -18.59058 -17.26201 -17.09146 -16.69105 -16.20153 -15.80615 -15.53148 -15.27716 -14.98060 -14.69632 -14.39394 -14.23011 -14.05383 -13.65274 -13.37430 -13.12807 -13.07035 -12.96878 -12.93698 -12.41851 -12.31485 -12.02916 -11.94705 -11.74444 -11.59867 -11.57082 -11.52960 -11.38448 -11.14638 -11.05921 -10.90265 -10.81741 -10.66297 -10.55867 -10.42620 -10.17513 -9.36718 -9.03726 -8.82228 -8.70627 -8.53085 -8.37146 -8.00638 -6.34571 -4.43252 1.73386 2.48994 3.19360 3.24935 3.27096 3.51599 3.62291 4.04410 4.22513 4.39679 4.52220 4.61484 4.84266 4.93498 5.00798 5.18828 5.24140 5.33965 5.39431 5.40226 5.47124 5.50620 5.56944 5.67142 5.76033 5.76826 5.80539 5.85469 5.87518 5.90167 5.96746 6.01584 6.03630 6.24332 6.33212 6.45311 6.49165 6.69333 6.73182 6.77518 6.81850 6.83900 7.10713 7.16948 7.28609 7.68161 7.78567 7.96644 8.01583 8.41962 8.60264 9.25943 9.39017 10.73190 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.003208 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.452679 B = 8725.373550 C = 9581.457884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.104 3.896 3 N -0.586 5.586 4 C 0.512 3.488 5 O -0.514 6.514 6 C 0.502 3.498 7 O -0.528 6.528 8 N -0.574 5.574 9 C 0.098 3.902 10 C -0.121 4.121 11 C 0.249 3.751 12 O -0.585 6.585 13 C -0.538 4.538 14 H 0.067 0.933 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.100 3.900 22 C 0.145 3.855 23 H 0.102 0.898 24 C -0.128 4.128 25 C 0.037 3.963 26 N -0.513 5.513 27 C 0.015 3.985 28 C 0.017 3.983 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.386 0.614 39 H 0.272 0.728 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.035 0.965 49 H 0.078 0.922 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 2.353 18.028 18.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.018 4.018 3 N -0.320 5.320 4 C 0.296 3.704 5 O -0.390 6.390 6 C 0.285 3.715 7 O -0.407 6.407 8 N -0.306 5.306 9 C -0.024 4.024 10 C -0.159 4.159 11 C 0.208 3.792 12 O -0.395 6.395 13 C -0.576 4.576 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.536 5.536 17 Si 0.732 3.268 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.021 4.021 22 C 0.041 3.959 23 H 0.120 0.880 24 C -0.167 4.167 25 C -0.091 4.091 26 N -0.236 5.236 27 C -0.134 4.134 28 C -0.111 4.111 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.053 0.947 49 H 0.096 0.904 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.347 2.627 18.893 19.219 hybrid contribution -0.898 -0.501 -1.881 2.143 sum 1.449 2.127 17.013 17.206 Atomic orbital electron populations 1.22103 0.95317 1.02304 1.02001 1.21959 0.95449 0.80687 1.03735 1.48005 1.64066 1.14982 1.04923 1.20416 0.79198 0.85706 0.85087 1.90640 1.42122 1.19581 1.86674 1.19603 0.82272 0.85546 0.84092 1.90677 1.42247 1.21519 1.86297 1.48688 1.53469 1.22314 1.06164 1.22643 0.96504 0.84309 0.98965 1.22818 1.01102 0.98458 0.93478 1.19488 0.82789 0.87702 0.89190 1.86091 1.32423 1.49753 1.71250 1.21501 1.22156 1.00188 1.13746 0.91443 1.25078 0.95958 0.94679 0.97510 1.69556 1.41871 1.03761 1.38428 0.86430 0.81389 0.77627 0.81313 1.19925 1.21030 1.19997 1.23240 1.00663 0.99689 0.78557 1.21859 0.94345 0.94717 0.85002 0.88040 1.22632 0.97828 0.93971 1.02298 1.23048 0.89580 0.96629 0.99861 1.65474 1.02436 1.03537 1.52201 1.22468 0.93937 0.97497 0.99488 1.23561 0.96208 0.92207 0.99164 0.93606 0.91210 0.91755 0.87775 0.91192 0.89332 0.91683 0.90595 0.90394 0.76222 0.91794 0.91277 0.91091 0.90669 0.90782 0.92345 0.90672 0.91477 0.91561 0.94676 0.90360 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.67 37.16 0.36 -1.53 16 2 C 0.10 1.23 5.68 -4.04 -0.02 1.20 16 3 N -0.59 -7.58 2.46 -165.05 -0.41 -7.99 16 4 C 0.51 8.21 6.59 -11.58 -0.08 8.14 16 5 O -0.51 -8.52 9.69 5.49 0.05 -8.47 16 6 C 0.50 9.53 7.68 -11.58 -0.09 9.44 16 7 O -0.53 -10.50 11.74 5.50 0.06 -10.44 16 8 N -0.57 -11.76 3.33 -171.02 -0.57 -12.33 16 9 C 0.10 1.86 6.14 -2.53 -0.02 1.84 16 10 C -0.12 -2.45 6.23 -24.58 -0.15 -2.60 16 11 C 0.25 5.96 0.86 -89.93 -0.08 5.88 16 12 O -0.59 -14.67 13.07 -35.23 -0.46 -15.14 16 13 C -0.54 -13.83 8.12 -34.44 -0.28 -14.11 16 14 H 0.07 1.70 7.76 -52.49 -0.41 1.30 16 15 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16 16 N -0.90 -23.29 10.97 55.43 0.61 -22.68 16 17 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 21 C 0.10 2.33 5.54 -3.06 -0.02 2.31 16 22 C 0.14 1.58 3.53 -66.55 -0.23 1.35 16 23 H 0.10 0.91 7.79 -51.93 -0.40 0.50 16 24 C -0.13 -1.40 6.05 -25.35 -0.15 -1.55 16 25 C 0.04 0.41 6.07 -2.18 -0.01 0.40 16 26 N -0.51 -5.76 5.67 -237.98 -1.35 -7.11 16 27 C 0.02 0.15 9.54 60.06 0.57 0.73 16 28 C 0.02 0.20 5.77 -2.02 -0.01 0.19 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 1.04 6.47 -51.93 -0.34 0.71 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.47 5.83 -51.93 -0.30 1.17 16 33 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 34 H 0.09 1.57 6.02 -51.93 -0.31 1.26 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.48 8.03 -51.93 -0.42 1.07 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.39 9.91 6.98 45.56 0.32 10.23 16 39 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.07 1.74 8.07 -51.92 -0.42 1.33 16 41 H 0.07 1.78 7.82 -51.93 -0.41 1.37 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.94 7.31 -51.93 -0.38 0.56 16 44 H 0.06 0.77 7.15 -51.93 -0.37 0.39 16 45 H 0.07 0.74 8.14 -51.94 -0.42 0.32 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.03 0.40 7.98 -51.93 -0.41 -0.02 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.07 1.02 5.55 -51.93 -0.29 0.73 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -27.18 382.70 -9.11 -36.28 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -7.49 Total: 13.62 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -0.31 Total: 13.41 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -1.72 Total: -50.10 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.34 Total: -34.04 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -27.18 -9.11 -36.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327399539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.396 kcal (2) G-P(sol) polarization free energy of solvation -27.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds