Wall clock time and date at job start Sat Apr 11 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47319 * 54.99936 * 4 3 2 6 6 C 1.53006 * 109.47090 * 294.99827 * 4 3 2 7 7 C 1.50695 * 109.47292 * 174.99998 * 4 3 2 8 8 O 1.21290 * 119.99745 * 359.97438 * 7 4 3 9 9 N 1.34776 * 120.00240 * 179.97438 * 7 4 3 10 10 C 1.46505 * 120.00055 * 180.02562 * 9 7 4 11 11 C 1.52996 * 109.47108 * 180.02562 * 10 9 7 12 12 H 1.08990 * 115.51989 * 29.57291 * 11 10 9 13 13 C 1.53007 * 117.44139 * 244.22559 * 11 10 9 14 14 H 1.09003 * 119.52501 * 4.09388 * 13 11 10 15 15 C 1.54377 * 118.12637 * 160.68483 * 13 11 10 16 16 N 1.48558 * 104.59207 * 87.23086 * 15 13 11 17 17 C 1.46902 * 110.99677 * 200.95552 * 16 15 13 18 18 C 1.50702 * 109.47077 * 189.99737 * 17 16 15 19 19 O 1.21290 * 119.99952 * 0.02562 * 18 17 16 20 20 N 1.34783 * 119.99925 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99573 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00269 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99558 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00058 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00291 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47272 * 89.99478 * 25 23 21 27 27 H 1.48497 * 109.47258 * 210.00011 * 25 23 21 28 28 H 1.48500 * 109.47060 * 329.99623 * 25 23 21 29 29 C 1.52139 * 104.44395 * 320.24870 * 16 15 13 30 30 C 1.52996 * 117.44309 * 175.00181 * 11 10 9 31 31 H 1.09008 * 119.52873 * 355.90195 * 30 11 10 32 32 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 34 34 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 35 35 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 36 36 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 37 37 H 1.09001 * 109.46683 * 300.00382 * 6 4 3 38 38 H 1.08998 * 109.46543 * 60.00238 * 6 4 3 39 39 H 1.08996 * 109.47382 * 179.97438 * 6 4 3 40 40 H 0.96992 * 120.00191 * 359.97438 * 9 7 4 41 41 H 1.09003 * 109.46960 * 300.00087 * 10 9 7 42 42 H 1.09001 * 109.47324 * 59.99294 * 10 9 7 43 43 H 1.08999 * 110.40796 * 206.00790 * 15 13 11 44 44 H 1.08998 * 110.41441 * 328.45253 * 15 13 11 45 45 H 1.08994 * 109.47527 * 310.00396 * 17 16 15 46 46 H 1.09005 * 109.46883 * 70.00748 * 17 16 15 47 47 H 0.96996 * 119.99679 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00374 * 180.02562 * 24 23 21 49 49 H 1.09008 * 111.91891 * 281.08497 * 29 16 15 50 50 H 1.09005 * 110.53127 * 157.51481 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8427 6 6 3.9963 0.5363 1.3065 7 6 4.1481 2.5558 -0.1245 8 8 3.4348 3.5336 -0.2048 9 7 5.4884 2.6958 -0.1459 10 6 6.0838 4.0290 -0.2658 11 6 7.6090 3.9081 -0.2665 12 1 8.0062 2.9795 -0.6763 13 6 8.3674 4.5442 0.9002 14 1 7.8098 4.9981 1.7196 15 6 9.8101 4.0692 1.1759 16 7 10.6585 4.9262 0.3082 17 6 11.9667 4.3019 0.0696 18 6 12.8821 5.2941 -0.6003 19 8 12.4840 6.4115 -0.8535 20 7 14.1431 4.9398 -0.9180 21 6 14.9759 5.8426 -1.5270 22 1 14.6218 6.8378 -1.7516 23 6 16.2761 5.4775 -1.8540 24 7 17.0746 6.3431 -2.4372 25 14 16.8890 3.7564 -1.4648 26 1 16.6121 2.8602 -2.6160 27 1 18.3513 3.7975 -1.2099 28 1 16.1906 3.2432 -0.2589 29 6 9.8751 5.0447 -0.9905 30 6 8.4175 5.1855 -0.5018 31 1 7.8973 6.1168 -0.7262 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 0.5139 0.8900 35 1 1.6887 1.8463 -0.8900 36 1 1.6887 1.8463 0.8900 37 1 3.6809 1.1525 2.1485 38 1 3.5532 -0.4555 1.3959 39 1 5.0828 0.4498 1.3059 40 1 6.0587 1.9139 -0.0813 41 1 5.7559 4.4910 -1.1969 42 1 5.7682 4.6450 0.5763 43 1 10.0658 4.2191 2.2248 44 1 9.9239 3.0203 0.9021 45 1 12.4003 3.9918 1.0203 46 1 11.8417 3.4310 -0.5740 47 1 14.4612 4.0461 -0.7159 48 1 17.9822 6.0881 -2.6659 49 1 9.9831 4.1567 -1.6134 50 1 10.1794 5.9352 -1.5406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330277988.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:21 Heat of formation + Delta-G solvation = -75.428278 kcal Electronic energy + Delta-G solvation = -28507.854064 eV Core-core repulsion = 24343.506558 eV Total energy + Delta-G solvation = -4164.347507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.55811 -39.87973 -38.30868 -38.11196 -35.57869 -34.35763 -33.98588 -33.40798 -31.65074 -28.93235 -28.39946 -27.82317 -26.64374 -26.14458 -24.39135 -23.12213 -21.81051 -21.09208 -20.32929 -19.98092 -19.31311 -18.24037 -17.90724 -16.85850 -16.51635 -16.29916 -16.01713 -15.65506 -15.51485 -15.23397 -15.09052 -14.77328 -14.42191 -14.27686 -13.89231 -13.60656 -13.48931 -13.26782 -13.04406 -12.96113 -12.77170 -12.68774 -12.43760 -12.25602 -12.03500 -11.92026 -11.81504 -11.52891 -11.43462 -11.36316 -11.23682 -10.98866 -10.60424 -10.38111 -10.18741 -10.13832 -9.98830 -9.97515 -9.55631 -9.41520 -8.63940 -8.18720 -8.12376 -6.30682 -3.82061 2.21465 2.52847 3.01781 3.05641 3.14295 3.30440 3.46762 3.73952 3.89848 4.10028 4.15221 4.18526 4.37394 4.45443 4.49217 4.71714 4.77401 4.84360 4.87223 4.87828 4.90597 5.05179 5.11324 5.14907 5.17864 5.19452 5.20532 5.28962 5.30129 5.39767 5.43330 5.48630 5.53163 5.60072 5.68777 5.69752 5.77110 5.91398 5.98848 6.00859 6.07730 6.31517 6.63383 6.84002 7.03164 7.05277 7.58737 7.77916 8.14892 8.60983 8.96009 9.43005 9.84552 10.82560 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.001558 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.514562 B =17965.178086 C =18431.377213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.079 3.921 4 C -0.110 4.110 5 H 0.107 0.893 6 C -0.141 4.141 7 C 0.521 3.479 8 O -0.541 6.541 9 N -0.723 5.723 10 C 0.153 3.847 11 C -0.146 4.146 12 H 0.106 0.894 13 C -0.152 4.152 14 H 0.119 0.881 15 C 0.058 3.942 16 N -0.481 5.481 17 C 0.029 3.971 18 C 0.455 3.545 19 O -0.557 6.557 20 N -0.593 5.593 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.063 3.937 30 C -0.143 4.143 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.403 0.597 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.090 0.910 46 H 0.051 0.949 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.048 0.952 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.890 -16.597 7.217 33.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.002 3.998 4 C -0.131 4.131 5 H 0.125 0.875 6 C -0.198 4.198 7 C 0.307 3.693 8 O -0.418 6.418 9 N -0.375 5.375 10 C 0.030 3.970 11 C -0.165 4.165 12 H 0.124 0.876 13 C -0.171 4.171 14 H 0.137 0.863 15 C -0.069 4.069 16 N -0.206 5.206 17 C -0.103 4.103 18 C 0.240 3.760 19 O -0.438 6.438 20 N -0.233 5.233 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.063 4.063 30 C -0.162 4.162 31 H 0.138 0.862 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.238 0.762 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.060 0.940 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.066 0.934 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -28.195 -14.677 7.146 32.580 hybrid contribution 0.787 -2.289 -0.081 2.422 sum -27.409 -16.966 7.066 33.000 Atomic orbital electron populations 1.22743 0.80541 1.02800 1.00252 1.87796 1.20037 1.27810 1.95559 1.22219 0.91422 0.84315 1.01795 1.21178 0.95463 0.94500 1.01986 0.87496 1.21740 1.01334 1.01810 0.94958 1.20385 0.82255 0.90841 0.75813 1.90731 1.60976 1.40749 1.49379 1.45950 1.06593 1.10040 1.74926 1.20845 0.89658 0.83872 1.02639 1.22664 0.92554 0.98303 1.02942 0.87595 1.23562 0.96803 1.04417 0.92302 0.86294 1.22654 0.90325 0.94827 0.99134 1.66382 1.00761 1.42951 1.10460 1.22091 0.91467 0.95763 1.00997 1.19587 0.82775 0.89115 0.84535 1.90556 1.75001 1.21604 1.56653 1.42210 1.11595 1.13931 1.55577 1.19426 0.92569 0.97062 1.34207 0.86284 1.25025 0.95866 0.97958 0.97285 1.69622 1.07493 1.34435 1.40692 0.86680 0.79482 0.84458 0.78801 1.19708 1.20180 1.19532 1.23349 0.88939 1.02610 0.91422 1.23473 0.96609 0.96421 0.99716 0.86219 0.89477 0.93920 0.93931 0.92243 0.92410 0.92098 0.90492 0.91969 0.76248 0.90610 0.90891 0.89490 0.93958 0.89193 0.93086 0.79795 0.91644 0.93421 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.04 10.24 -35.23 -0.36 -3.40 16 3 C 0.08 0.61 4.67 37.16 0.17 0.78 16 4 C -0.11 -0.73 2.96 -91.77 -0.27 -1.00 16 5 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 6 C -0.14 -0.74 8.99 37.16 0.33 -0.40 16 7 C 0.52 4.60 7.15 -10.99 -0.08 4.52 16 8 O -0.54 -6.88 15.92 5.55 0.09 -6.79 16 9 N -0.72 -5.10 5.45 -60.29 -0.33 -5.43 16 10 C 0.15 1.26 5.95 -4.04 -0.02 1.24 16 11 C -0.15 -1.22 5.38 -90.62 -0.49 -1.71 16 12 H 0.11 0.82 8.04 -51.93 -0.42 0.40 16 13 C -0.15 -1.50 6.74 -89.24 -0.60 -2.10 16 14 H 0.12 1.09 8.12 -51.93 -0.42 0.67 16 15 C 0.06 0.66 6.27 -2.18 -0.01 0.65 16 16 N -0.48 -7.49 5.03 -228.13 -1.15 -8.63 16 17 C 0.03 0.47 5.32 -4.97 -0.03 0.45 16 18 C 0.45 10.25 7.63 -10.98 -0.08 10.16 16 19 O -0.56 -14.87 14.85 5.55 0.08 -14.78 16 20 N -0.59 -14.04 5.09 -10.96 -0.06 -14.09 16 21 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 22 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 25 Si 0.88 19.23 27.74 -169.99 -4.71 14.52 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 29 C 0.06 0.92 5.91 -0.11 0.00 0.92 16 30 C -0.14 -1.59 6.75 -89.24 -0.60 -2.20 16 31 H 0.12 1.30 8.14 -51.92 -0.42 0.87 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.06 0.49 7.95 -51.93 -0.41 0.08 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.41 7.82 -51.93 -0.41 0.00 16 39 H 0.06 0.24 7.56 -51.93 -0.39 -0.15 16 40 H 0.40 1.88 7.82 -40.82 -0.32 1.56 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.66 7.94 -51.93 -0.41 0.25 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.04 0.42 8.00 -51.93 -0.42 0.01 16 45 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 46 H 0.05 0.73 7.85 -51.93 -0.41 0.32 16 47 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 48 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.05 0.64 7.88 -51.92 -0.41 0.23 16 50 H 0.10 1.81 7.32 -51.93 -0.38 1.43 16 LS Contribution 408.53 15.07 6.16 6.16 Total: -1.00 -35.08 408.53 -8.73 -43.82 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -8.41 Total: 8.70 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -0.82 Total: 4.90 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.76 Total: -53.12 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.19 Total: -24.97 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.08 -8.73 -43.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330277988.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.613 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds