Wall clock time and date at job start Sat Apr 11 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47319 * 54.99936 * 4 3 2 6 6 C 1.53006 * 109.47090 * 294.99827 * 4 3 2 7 7 C 1.50695 * 109.47292 * 174.99998 * 4 3 2 8 8 O 1.21290 * 119.99745 * 359.97438 * 7 4 3 9 9 N 1.34776 * 120.00240 * 179.97438 * 7 4 3 10 10 C 1.46505 * 120.00055 * 180.02562 * 9 7 4 11 11 C 1.52996 * 109.47108 * 180.02562 * 10 9 7 12 12 H 1.08990 * 115.51989 * 29.57291 * 11 10 9 13 13 C 1.53007 * 117.44139 * 244.22559 * 11 10 9 14 14 H 1.09003 * 119.52501 * 4.09388 * 13 11 10 15 15 C 1.54377 * 118.12637 * 160.68483 * 13 11 10 16 16 N 1.48558 * 104.59207 * 87.23086 * 15 13 11 17 17 C 1.46902 * 110.99677 * 200.95552 * 16 15 13 18 18 C 1.50702 * 109.47077 * 189.99737 * 17 16 15 19 19 O 1.21290 * 119.99952 * 0.02562 * 18 17 16 20 20 N 1.34783 * 119.99925 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99573 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00269 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99558 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00058 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00291 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47272 * 89.99478 * 25 23 21 27 27 H 1.48497 * 109.47258 * 210.00011 * 25 23 21 28 28 H 1.48500 * 109.47060 * 329.99623 * 25 23 21 29 29 C 1.52139 * 104.44395 * 320.24870 * 16 15 13 30 30 C 1.52996 * 117.44309 * 175.00181 * 11 10 9 31 31 H 1.09008 * 119.52873 * 355.90195 * 30 11 10 32 32 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 34 34 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 35 35 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 36 36 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 37 37 H 1.09001 * 109.46683 * 300.00382 * 6 4 3 38 38 H 1.08998 * 109.46543 * 60.00238 * 6 4 3 39 39 H 1.08996 * 109.47382 * 179.97438 * 6 4 3 40 40 H 0.96992 * 120.00191 * 359.97438 * 9 7 4 41 41 H 1.09003 * 109.46960 * 300.00087 * 10 9 7 42 42 H 1.09001 * 109.47324 * 59.99294 * 10 9 7 43 43 H 1.08999 * 110.40796 * 206.00790 * 15 13 11 44 44 H 1.08998 * 110.41441 * 328.45253 * 15 13 11 45 45 H 1.08994 * 109.47527 * 310.00396 * 17 16 15 46 46 H 1.09005 * 109.46883 * 70.00748 * 17 16 15 47 47 H 0.96996 * 119.99679 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00374 * 180.02562 * 24 23 21 49 49 H 1.09008 * 111.91891 * 281.08497 * 29 16 15 50 50 H 1.09005 * 110.53127 * 157.51481 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8427 6 6 3.9963 0.5363 1.3065 7 6 4.1481 2.5558 -0.1245 8 8 3.4348 3.5336 -0.2048 9 7 5.4884 2.6958 -0.1459 10 6 6.0838 4.0290 -0.2658 11 6 7.6090 3.9081 -0.2665 12 1 8.0062 2.9795 -0.6763 13 6 8.3674 4.5442 0.9002 14 1 7.8098 4.9981 1.7196 15 6 9.8101 4.0692 1.1759 16 7 10.6585 4.9262 0.3082 17 6 11.9667 4.3019 0.0696 18 6 12.8821 5.2941 -0.6003 19 8 12.4840 6.4115 -0.8535 20 7 14.1431 4.9398 -0.9180 21 6 14.9759 5.8426 -1.5270 22 1 14.6218 6.8378 -1.7516 23 6 16.2761 5.4775 -1.8540 24 7 17.0746 6.3431 -2.4372 25 14 16.8890 3.7564 -1.4648 26 1 16.6121 2.8602 -2.6160 27 1 18.3513 3.7975 -1.2099 28 1 16.1906 3.2432 -0.2589 29 6 9.8751 5.0447 -0.9905 30 6 8.4175 5.1855 -0.5018 31 1 7.8973 6.1168 -0.7262 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 0.5139 0.8900 35 1 1.6887 1.8463 -0.8900 36 1 1.6887 1.8463 0.8900 37 1 3.6809 1.1525 2.1485 38 1 3.5532 -0.4555 1.3959 39 1 5.0828 0.4498 1.3059 40 1 6.0587 1.9139 -0.0813 41 1 5.7559 4.4910 -1.1969 42 1 5.7682 4.6450 0.5763 43 1 10.0658 4.2191 2.2248 44 1 9.9239 3.0203 0.9021 45 1 12.4003 3.9918 1.0203 46 1 11.8417 3.4310 -0.5740 47 1 14.4612 4.0461 -0.7159 48 1 17.9822 6.0881 -2.6659 49 1 9.9831 4.1567 -1.6134 50 1 10.1794 5.9352 -1.5406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330277988.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:20 Heat of formation + Delta-G solvation = -103.986489 kcal Electronic energy + Delta-G solvation = -28509.092441 eV Core-core repulsion = 24343.506558 eV Total energy + Delta-G solvation = -4165.585884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33211 -40.82572 -39.87423 -38.78679 -36.53266 -35.91218 -34.98989 -34.30072 -33.71148 -30.00420 -29.36159 -28.37691 -27.73817 -26.67412 -25.99422 -23.87672 -22.83171 -21.85980 -21.31321 -21.09961 -20.68376 -20.11862 -18.50636 -17.73623 -17.49228 -17.09726 -16.92460 -16.82181 -16.47961 -16.26719 -16.21173 -15.72852 -15.64064 -15.12688 -14.95762 -14.78035 -14.54831 -14.41221 -14.30657 -14.09800 -13.77698 -13.52127 -13.43859 -13.18927 -13.16244 -12.98926 -12.54979 -12.43944 -12.40185 -12.30374 -12.25729 -12.11327 -11.96823 -11.86067 -11.48687 -11.15176 -11.00358 -10.75846 -10.67923 -10.38759 -10.23017 -10.10378 -9.32574 -8.40071 -6.01044 1.30705 1.36379 1.45497 1.54843 1.90864 1.98543 2.24157 2.51271 2.68301 2.93833 3.16060 3.22990 3.38552 3.59405 3.67275 3.87791 3.95540 4.04215 4.10466 4.13857 4.21205 4.26759 4.34976 4.37177 4.46471 4.47509 4.49707 4.53622 4.58937 4.63976 4.65369 4.70571 4.75785 4.85220 4.91385 4.97169 5.00152 5.06846 5.19664 5.26889 5.32152 5.41163 5.53825 5.75332 5.91520 6.04459 6.12760 6.48342 6.61649 6.90326 7.16991 7.41845 8.00273 8.77825 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.001558 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.514562 B =17965.178086 C =18431.377213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.080 3.920 4 C -0.104 4.104 5 H 0.123 0.877 6 C -0.136 4.136 7 C 0.521 3.479 8 O -0.586 6.586 9 N -0.709 5.709 10 C 0.157 3.843 11 C -0.109 4.109 12 H 0.126 0.874 13 C -0.144 4.144 14 H 0.127 0.873 15 C 0.061 3.939 16 N -0.515 5.515 17 C 0.042 3.958 18 C 0.451 3.549 19 O -0.609 6.609 20 N -0.593 5.593 21 C -0.328 4.328 22 H 0.053 0.947 23 C -0.016 4.016 24 N -0.937 5.937 25 Si 0.966 3.034 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.230 1.230 29 C 0.064 3.936 30 C -0.164 4.164 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.418 0.582 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.120 0.880 46 H 0.085 0.915 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.060 0.940 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.497 -21.493 8.993 36.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.003 3.997 4 C -0.125 4.125 5 H 0.141 0.859 6 C -0.194 4.194 7 C 0.308 3.692 8 O -0.466 6.466 9 N -0.361 5.361 10 C 0.033 3.967 11 C -0.128 4.128 12 H 0.144 0.856 13 C -0.163 4.163 14 H 0.145 0.855 15 C -0.066 4.066 16 N -0.240 5.240 17 C -0.089 4.089 18 C 0.239 3.761 19 O -0.492 6.492 20 N -0.236 5.236 21 C -0.458 4.458 22 H 0.071 0.929 23 C -0.214 4.214 24 N -0.577 5.577 25 Si 0.786 3.214 26 H -0.181 1.181 27 H -0.201 1.201 28 H -0.153 1.153 29 C -0.063 4.063 30 C -0.184 4.184 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.256 0.744 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.087 0.913 45 H 0.138 0.862 46 H 0.102 0.898 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -28.812 -19.616 8.945 35.985 hybrid contribution 0.875 -0.603 -0.669 1.256 sum -27.937 -20.219 8.276 35.465 Atomic orbital electron populations 1.22931 0.79431 1.04015 1.00665 1.87769 1.21353 1.27625 1.95586 1.22169 0.92405 0.84292 1.00848 1.21161 0.94495 0.93301 1.03507 0.85871 1.21728 1.02612 1.01397 0.93620 1.20777 0.82446 0.91138 0.74860 1.90718 1.62058 1.42318 1.51529 1.45802 1.06275 1.10166 1.73899 1.20708 0.89593 0.84430 1.01982 1.22548 0.91992 0.97358 1.00913 0.85635 1.23640 0.96682 1.04013 0.91986 0.85467 1.22720 0.89784 0.95475 0.98602 1.66283 1.01200 1.45134 1.11419 1.21990 0.90606 0.94178 1.02166 1.20943 0.82790 0.89611 0.82761 1.90542 1.75981 1.24537 1.58190 1.42031 1.11673 1.14037 1.55810 1.18993 0.94275 0.95888 1.36604 0.92922 1.26124 0.95162 1.04001 0.96095 1.69813 1.08206 1.37788 1.41931 0.85353 0.78701 0.76877 0.80497 1.18102 1.20123 1.15296 1.23167 0.90823 1.00980 0.91283 1.23303 0.95536 0.98059 1.01487 0.86915 0.87891 0.93640 0.93440 0.93477 0.93210 0.92871 0.90334 0.89940 0.74397 0.91583 0.91503 0.88624 0.91296 0.86187 0.89753 0.77496 0.91196 0.92166 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -5.74 10.24 -148.98 -1.53 -7.27 16 3 C 0.08 1.17 4.67 71.98 0.34 1.51 16 4 C -0.10 -1.16 2.96 -11.54 -0.03 -1.20 16 5 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 6 C -0.14 -1.06 8.99 71.98 0.65 -0.41 16 7 C 0.52 8.34 7.15 87.66 0.63 8.97 16 8 O -0.59 -14.72 15.92 -3.06 -0.05 -14.77 16 9 N -0.71 -8.01 5.45 -463.05 -2.52 -10.53 16 10 C 0.16 2.25 5.95 86.38 0.51 2.77 16 11 C -0.11 -1.49 5.38 -10.79 -0.06 -1.55 16 12 H 0.13 1.31 8.04 -2.39 -0.02 1.30 16 13 C -0.14 -2.43 6.74 -9.90 -0.07 -2.49 16 14 H 0.13 1.97 8.12 -2.39 -0.02 1.95 16 15 C 0.06 1.14 6.27 86.45 0.54 1.68 16 16 N -0.52 -15.08 5.03 -875.68 -4.40 -19.48 16 17 C 0.04 1.26 5.32 85.56 0.46 1.71 16 18 C 0.45 20.41 7.63 87.66 0.67 21.07 16 19 O -0.61 -34.23 14.85 -3.06 -0.05 -34.28 16 20 N -0.59 -27.89 5.09 -306.98 -1.56 -29.46 16 21 C -0.33 -19.33 10.16 84.04 0.85 -18.48 16 22 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 23 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 24 N -0.94 -56.72 13.96 21.66 0.30 -56.41 16 25 Si 0.97 38.40 27.74 68.60 1.90 40.30 16 26 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 27 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 28 H -0.23 -7.59 6.52 99.48 0.65 -6.95 16 29 C 0.06 1.83 5.91 85.73 0.51 2.34 16 30 C -0.16 -3.50 6.75 -9.90 -0.07 -3.56 16 31 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.05 0.79 7.95 -2.39 -0.02 0.77 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.08 0.63 7.82 -2.39 -0.02 0.61 16 39 H 0.08 0.30 7.56 -2.39 -0.02 0.28 16 40 H 0.42 2.15 7.82 -92.71 -0.72 1.43 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.10 7.94 -2.39 -0.02 1.08 16 43 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 0.96 8.00 -2.39 -0.02 0.95 16 45 H 0.12 2.90 8.08 -2.39 -0.02 2.88 16 46 H 0.08 2.00 7.85 -2.38 -0.02 1.98 16 47 H 0.39 14.96 5.76 -92.71 -0.53 14.42 16 48 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 49 H 0.06 1.51 7.88 -2.38 -0.02 1.49 16 50 H 0.06 2.13 7.32 -2.38 -0.02 2.11 16 Total: -1.00 -84.54 408.53 -1.63 -86.17 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -0.37 Total: 32.26 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 6.64 Total: 13.45 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -8.19 Total: -115.88 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -1.62 Total: -56.31 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.90 Total: 40.30 kcal Total: -84.54 -1.63 -86.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330277988.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.814 kcal (2) G-P(sol) polarization free energy of solvation -84.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds