Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47293 * 2 1 4 4 C 1.50705 * 109.46816 * 119.99721 * 2 1 3 5 5 O 1.21284 * 119.99542 * 120.00258 * 4 2 1 6 6 N 1.34773 * 120.00278 * 300.00262 * 4 2 1 7 7 C 1.46497 * 120.00050 * 180.02562 * 6 4 2 8 8 H 1.09002 * 109.46843 * 324.99716 * 7 6 4 9 9 C 1.53004 * 109.46981 * 204.99784 * 7 6 4 10 10 N 1.46495 * 109.46925 * 55.00128 * 9 7 6 11 11 C 1.36943 * 119.99592 * 180.02562 * 10 9 7 12 12 H 1.07990 * 120.00441 * 359.97438 * 11 10 9 13 13 C 1.38818 * 119.99564 * 179.97438 * 11 10 9 14 14 N 1.31620 * 120.00100 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99506 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47182 * 90.00122 * 15 13 11 17 17 H 1.48504 * 109.46723 * 209.99794 * 15 13 11 18 18 H 1.48500 * 109.47319 * 329.99509 * 15 13 11 19 19 C 1.53001 * 109.47385 * 84.99576 * 7 6 4 20 20 C 1.53013 * 109.46619 * 60.00100 * 19 7 6 21 21 C 1.53000 * 109.47420 * 179.97438 * 19 7 6 22 22 C 1.52993 * 109.47248 * 300.00566 * 19 7 6 23 23 N 1.46497 * 109.47149 * 239.99679 * 2 1 3 24 24 C 1.33879 * 122.76265 * 120.00307 * 23 2 1 25 25 O 1.21233 * 125.39135 * 359.97435 * 24 23 2 26 26 C 1.51312 * 109.20866 * 180.24223 * 24 23 2 27 27 C 1.54228 * 103.55616 * 359.63118 * 26 24 23 28 28 C 1.33875 * 122.76728 * 299.99965 * 23 2 1 29 29 O 1.21230 * 125.39221 * 0.02562 * 28 23 2 30 30 H 1.08998 * 109.47428 * 300.00275 * 1 2 3 31 31 H 1.09006 * 109.47300 * 60.00256 * 1 2 3 32 32 H 1.09003 * 109.47288 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99647 * 359.97438 * 6 4 2 34 34 H 1.09000 * 109.47108 * 174.99874 * 9 7 6 35 35 H 1.09004 * 109.47179 * 294.99964 * 9 7 6 36 36 H 0.97001 * 120.00262 * 359.97438 * 10 9 7 37 37 H 0.97004 * 119.99765 * 180.02562 * 14 13 11 38 38 H 1.08991 * 109.47012 * 60.00033 * 20 19 7 39 39 H 1.08996 * 109.46349 * 180.02562 * 20 19 7 40 40 H 1.09003 * 109.46802 * 299.99556 * 20 19 7 41 41 H 1.09002 * 109.46575 * 60.00283 * 21 19 7 42 42 H 1.09000 * 109.47306 * 180.02562 * 21 19 7 43 43 H 1.09002 * 109.46989 * 300.00832 * 21 19 7 44 44 H 1.08998 * 109.47504 * 59.99386 * 22 19 7 45 45 H 1.08996 * 109.47650 * 180.02562 * 22 19 7 46 46 H 1.09005 * 109.46909 * 299.99242 * 22 19 7 47 47 H 1.09004 * 110.60416 * 118.27645 * 26 24 23 48 48 H 1.08993 * 110.60499 * 241.24048 * 26 24 23 49 49 H 1.08994 * 110.80706 * 241.73088 * 27 26 24 50 50 H 1.08998 * 110.53952 * 118.82350 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1953 -0.9402 3.6508 8 1 2.2324 -2.0130 3.4615 9 6 1.2513 -0.6612 4.8221 10 7 -0.1146 -1.0363 4.4483 11 6 -1.1383 -0.8744 5.3434 12 1 -0.9386 -0.4706 6.3249 13 6 -2.4327 -1.2293 4.9891 14 7 -2.6762 -1.7209 3.7927 15 14 -3.8289 -1.0091 6.2104 16 1 -4.4205 0.3432 6.0473 17 1 -4.8704 -2.0382 5.9622 18 1 -3.3059 -1.1573 7.5923 19 6 3.5978 -0.4343 3.9944 20 6 3.5457 1.0717 4.2601 21 6 4.1080 -1.1547 5.2440 22 6 4.5418 -0.7131 2.8231 23 7 2.0183 -0.6907 -1.1961 24 6 2.7906 -0.0941 -2.1126 25 8 3.1703 1.0564 -2.0694 26 6 3.1088 -1.0813 -3.2143 27 6 2.3867 -2.3683 -2.7661 28 6 1.7292 -1.9703 -1.4627 29 8 1.0480 -2.6953 -0.7698 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.1492 0.5389 2.5435 34 1 1.5643 -1.2447 5.6879 35 1 1.2821 0.4001 5.0688 36 1 -0.2941 -1.3986 3.5666 37 1 -3.5808 -1.9686 3.5450 38 1 2.8732 1.2704 5.0944 39 1 4.5449 1.4322 4.5044 40 1 3.1822 1.5853 3.3700 41 1 4.1450 -2.2276 5.0551 42 1 5.1069 -0.7939 5.4891 43 1 3.4353 -0.9556 6.0783 44 1 4.1781 -0.1996 1.9331 45 1 5.5410 -0.3531 3.0680 46 1 4.5789 -1.7860 2.6339 47 1 2.7156 -0.7310 -4.1687 48 1 4.1836 -1.2498 -3.2797 49 1 3.1001 -3.1764 -2.6048 50 1 1.6364 -2.6614 -3.5004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332809676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -114.530088 kcal Electronic energy + Delta-G solvation = -32118.543147 eV Core-core repulsion = 27952.500059 eV Total energy + Delta-G solvation = -4166.043088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.08203 -41.23809 -39.60961 -38.74714 -36.88607 -36.21891 -35.40800 -34.51195 -33.00200 -31.27101 -29.33188 -28.18727 -27.89518 -27.06664 -26.10760 -25.35526 -23.39684 -23.15816 -22.07599 -20.36779 -19.87254 -19.20011 -18.48735 -18.26712 -17.63362 -17.25400 -17.03377 -16.80338 -16.37190 -15.75480 -15.51071 -15.44896 -15.25008 -15.07122 -14.90182 -14.84302 -14.78467 -14.48529 -14.24162 -13.98150 -13.67865 -13.51095 -13.35493 -13.07526 -13.02550 -12.99240 -12.95957 -12.76389 -12.56269 -12.38701 -12.20481 -12.08712 -12.04604 -11.76745 -11.68236 -11.53879 -11.36809 -11.33181 -10.98728 -10.94122 -10.56398 -9.94596 -8.99389 -7.93008 -5.23066 0.57400 1.33121 1.47316 1.48785 1.53276 1.57093 1.73687 2.25916 2.55785 3.21428 3.30095 3.40565 3.52821 3.63007 3.65622 3.77383 3.81261 3.85593 3.99778 4.15378 4.19798 4.23214 4.31090 4.40763 4.55265 4.60827 4.67718 4.75462 4.77527 4.80047 4.86656 4.90804 4.91946 4.93245 5.01762 5.04651 5.05048 5.12837 5.19866 5.27239 5.39123 5.48876 5.52275 5.59589 5.84873 6.26390 6.37357 6.45974 6.79935 7.16237 7.33873 8.07383 8.31385 9.29499 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.004055 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.698517 B = 6904.009665 C = 8613.390127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.110 3.890 3 H 0.140 0.860 4 C 0.509 3.491 5 O -0.555 6.555 6 N -0.698 5.698 7 C 0.161 3.839 8 H 0.050 0.950 9 C 0.145 3.855 10 N -0.742 5.742 11 C -0.244 4.244 12 H 0.079 0.921 13 C -0.071 4.071 14 N -0.966 5.966 15 Si 0.971 3.029 16 H -0.285 1.285 17 H -0.301 1.301 18 H -0.270 1.270 19 C -0.071 4.071 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.116 4.116 23 N -0.564 5.564 24 C 0.523 3.477 25 O -0.522 6.522 26 C -0.135 4.135 27 C -0.141 4.141 28 C 0.514 3.486 29 O -0.514 6.514 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.407 0.593 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.373 0.627 37 H 0.249 0.751 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.038 0.962 47 H 0.155 0.845 48 H 0.145 0.855 49 H 0.135 0.865 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.778 5.119 -13.656 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.003 3.997 3 H 0.157 0.843 4 C 0.294 3.706 5 O -0.434 6.434 6 N -0.349 5.349 7 C 0.056 3.944 8 H 0.068 0.932 9 C 0.019 3.981 10 N -0.385 5.385 11 C -0.375 4.375 12 H 0.097 0.903 13 C -0.264 4.264 14 N -0.616 5.616 15 Si 0.800 3.200 16 H -0.212 1.212 17 H -0.227 1.227 18 H -0.195 1.195 19 C -0.072 4.072 20 C -0.194 4.194 21 C -0.196 4.196 22 C -0.174 4.174 23 N -0.306 5.306 24 C 0.315 3.685 25 O -0.396 6.396 26 C -0.174 4.174 27 C -0.180 4.180 28 C 0.306 3.694 29 O -0.386 6.386 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.243 0.757 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.205 0.795 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.173 0.827 48 H 0.163 0.837 49 H 0.153 0.847 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 16.036 4.679 -13.133 21.249 hybrid contribution -1.629 -0.008 0.733 1.787 sum 14.407 4.671 -12.400 19.574 Atomic orbital electron populations 1.21991 0.90795 1.03388 1.04714 1.21197 0.97095 0.98257 0.83110 0.84277 1.20674 0.79968 0.84590 0.85380 1.90665 1.39081 1.26742 1.86862 1.45744 1.52536 1.31884 1.04700 1.21088 0.93529 0.95715 0.84054 0.93192 1.21218 0.83647 0.98603 0.94651 1.42543 1.02905 1.77140 1.15960 1.19609 0.87796 1.34185 0.95928 0.90332 1.25527 0.99921 1.02373 0.98532 1.69852 1.19985 1.50727 1.21072 0.85178 0.79144 0.76835 0.78795 1.21163 1.22749 1.19504 1.20869 0.92759 0.97236 0.96373 1.21872 1.02596 0.93167 1.01718 1.21871 1.01872 0.99620 0.96207 1.21730 0.98479 1.00547 0.96614 1.46765 1.47380 1.14759 1.21743 1.21751 0.74704 0.88179 0.83856 1.90750 1.52630 1.18482 1.77761 1.22581 1.05977 0.90856 0.97960 1.22575 1.02615 1.00208 0.92637 1.21817 0.78782 0.79991 0.88855 1.90813 1.37669 1.55333 1.54797 0.89922 0.89125 0.93178 0.75686 0.94597 0.93586 0.79536 0.94237 0.91945 0.91100 0.92981 0.93619 0.90504 0.91976 0.94510 0.91769 0.94327 0.82694 0.83742 0.84666 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 9.07 71.98 0.65 -3.83 16 2 C 0.11 3.15 3.12 44.25 0.14 3.29 16 3 H 0.14 3.50 7.41 -2.39 -0.02 3.48 16 4 C 0.51 17.56 5.15 87.66 0.45 18.01 16 5 O -0.56 -22.09 11.93 12.49 0.15 -21.94 16 6 N -0.70 -23.21 3.53 -442.53 -1.56 -24.77 16 7 C 0.16 5.61 1.69 44.99 0.08 5.69 16 8 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 9 C 0.15 5.63 5.10 86.38 0.44 6.07 16 10 N -0.74 -37.31 5.43 -343.45 -1.87 -39.18 16 11 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 12 H 0.08 4.10 7.83 -2.92 -0.02 4.08 16 13 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 14 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16 15 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 C -0.07 -1.94 0.62 -52.18 -0.03 -1.97 16 20 C -0.14 -3.17 7.97 71.99 0.57 -2.60 16 21 C -0.14 -3.42 8.12 71.98 0.58 -2.84 16 22 C -0.12 -3.29 7.00 71.98 0.50 -2.79 16 23 N -0.56 -14.49 2.28 -738.14 -1.68 -16.17 16 24 C 0.52 10.90 8.08 87.99 0.71 11.62 16 25 O -0.52 -13.86 17.23 -2.88 -0.05 -13.91 16 26 C -0.13 -1.20 7.03 30.46 0.21 -0.99 16 27 C -0.14 -1.70 7.03 30.46 0.21 -1.49 16 28 C 0.51 13.79 6.70 87.99 0.59 14.38 16 29 O -0.51 -19.60 15.12 12.66 0.19 -19.41 16 30 H 0.08 2.50 7.56 -2.39 -0.02 2.48 16 31 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.05 1.86 6.64 -2.39 -0.02 1.84 16 33 H 0.41 12.76 8.02 -92.71 -0.74 12.02 16 34 H 0.04 1.41 6.71 -2.39 -0.02 1.40 16 35 H 0.05 1.66 6.17 -2.38 -0.01 1.65 16 36 H 0.37 20.64 7.33 -92.71 -0.68 19.96 16 37 H 0.25 15.01 8.31 -92.71 -0.77 14.23 16 38 H 0.06 1.47 6.32 -2.39 -0.02 1.46 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.05 1.21 7.60 -2.39 -0.02 1.20 16 41 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.55 6.54 -2.39 -0.02 1.53 16 44 H 0.04 1.12 5.78 -2.39 -0.01 1.11 16 45 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.04 1.25 7.53 -2.38 -0.02 1.23 16 47 H 0.16 0.40 8.14 -2.38 -0.02 0.39 16 48 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -80.53 392.23 3.46 -77.07 By element: Atomic # 1 Polarization: 43.53 SS G_CDS: -0.45 Total: 43.08 kcal Atomic # 6 Polarization: 20.00 SS G_CDS: 6.42 Total: 26.43 kcal Atomic # 7 Polarization: -134.59 SS G_CDS: -4.83 Total: -139.42 kcal Atomic # 8 Polarization: -55.55 SS G_CDS: 0.29 Total: -55.26 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -80.53 3.46 -77.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332809676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.461 kcal (2) G-P(sol) polarization free energy of solvation -80.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds