Wall clock time and date at job start Sat Apr 11 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47122 * 2 1 4 4 N 1.46500 * 109.47296 * 119.99968 * 2 1 3 5 5 C 1.34773 * 120.00044 * 275.00396 * 4 2 1 6 6 O 1.21282 * 120.00082 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.46896 * 109.46819 * 179.97438 * 7 5 4 9 9 C 1.47477 * 111.00214 * 265.97109 * 8 7 5 10 10 C 1.53516 * 87.93310 * 221.29774 * 9 8 7 11 11 O 1.42900 * 114.17230 * 272.37714 * 10 9 8 12 12 C 1.50698 * 114.34339 * 139.68002 * 10 9 8 13 13 H 1.08008 * 120.00200 * 266.07760 * 12 10 9 14 14 C 1.37873 * 119.99899 * 86.07767 * 12 10 9 15 15 N 1.31509 * 119.99979 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99902 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47241 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47281 * 120.00278 * 16 14 12 19 19 H 1.48506 * 109.47095 * 240.00117 * 16 14 12 20 20 C 1.47480 * 110.99925 * 169.99721 * 8 7 5 21 21 C 1.50703 * 109.47075 * 240.00208 * 2 1 3 22 22 O 1.21281 * 119.99750 * 262.89333 * 21 2 1 23 23 N 1.34778 * 120.00048 * 82.89448 * 21 2 1 24 24 C 1.46929 * 120.62883 * 174.82268 * 23 21 2 25 25 C 1.53192 * 108.77203 * 233.60497 * 24 23 21 26 26 C 1.53039 * 109.31421 * 305.36534 * 25 24 23 27 27 C 1.53037 * 109.53615 * 61.36676 * 26 25 24 28 28 C 1.46923 * 120.63203 * 354.81924 * 23 21 2 29 29 H 1.09000 * 109.46925 * 302.44679 * 1 2 3 30 30 H 1.09006 * 109.47170 * 62.44507 * 1 2 3 31 31 H 1.09000 * 109.46851 * 182.44646 * 1 2 3 32 32 H 0.96998 * 119.99708 * 95.00083 * 4 2 1 33 33 H 1.08996 * 109.46705 * 299.99836 * 7 5 4 34 34 H 1.08995 * 109.46998 * 59.99860 * 7 5 4 35 35 H 1.08996 * 113.47509 * 336.06320 * 9 8 7 36 36 H 1.09000 * 113.47776 * 106.53251 * 9 8 7 37 37 H 0.96696 * 113.99979 * 273.83960 * 11 10 9 38 38 H 0.97007 * 120.00095 * 179.97438 * 15 14 12 39 39 H 1.09008 * 113.47744 * 253.47559 * 20 8 7 40 40 H 1.09005 * 113.47590 * 23.87655 * 20 8 7 41 41 H 1.09000 * 109.58645 * 113.82025 * 24 23 21 42 42 H 1.08996 * 109.58675 * 353.39589 * 24 23 21 43 43 H 1.09002 * 109.49330 * 185.41222 * 25 24 23 44 44 H 1.09001 * 109.49818 * 65.32273 * 25 24 23 45 45 H 1.09000 * 109.45627 * 181.38904 * 26 25 24 46 46 H 1.08997 * 109.45814 * 301.34446 * 26 25 24 47 47 H 1.08998 * 109.49964 * 58.58851 * 27 26 25 48 48 H 1.08999 * 109.49557 * 178.68253 * 27 26 25 49 49 H 1.09004 * 109.58504 * 6.60550 * 28 23 21 50 50 H 1.09002 * 109.59028 * 246.18336 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6500 -0.7286 3.5874 8 7 2.6998 0.2154 4.7118 9 6 4.0405 0.8165 4.8383 10 6 3.9084 0.6555 6.3592 11 8 3.2709 1.7559 7.0110 12 6 5.1710 0.2060 7.0483 13 1 5.3397 -0.8443 7.2353 14 6 6.1108 1.1356 7.4401 15 7 5.9052 2.4145 7.2129 16 14 7.6755 0.5786 8.2950 17 1 7.6655 -0.9001 8.4314 18 1 8.8533 0.9930 7.4910 19 1 7.7520 1.1999 9.6416 20 6 2.9568 -0.4886 5.9820 21 6 2.0323 -0.7104 -1.2305 22 8 2.3570 -1.8772 -1.1670 23 7 2.1208 -0.0490 -2.4015 24 6 2.7136 -0.6927 -3.5818 25 6 3.8239 0.2094 -4.1298 26 6 3.2571 1.6062 -4.3938 27 6 2.7488 2.2086 -3.0820 28 6 1.6263 1.3292 -2.5221 29 1 -0.3633 0.5514 0.8672 30 1 -0.3634 0.4754 -0.9111 31 1 -0.3633 -1.0267 0.0439 32 1 2.2491 -1.6317 1.1525 33 1 1.9778 -1.5509 3.8324 34 1 3.6493 -1.1203 3.3978 35 1 4.8326 0.2064 4.4043 36 1 4.0827 1.8563 4.5138 37 1 3.8725 2.4750 7.2475 38 1 6.5663 3.0686 7.4889 39 1 2.0804 -0.5550 6.6268 40 1 3.4588 -1.4476 5.8531 41 1 1.9477 -0.8338 -4.3444 42 1 3.1332 -1.6582 -3.2994 43 1 4.2070 -0.2097 -5.0603 44 1 4.6315 0.2762 -3.4008 45 1 4.0391 2.2433 -4.8070 46 1 2.4335 1.5356 -5.1042 47 1 3.5664 2.2566 -2.3628 48 1 2.3667 3.2125 -3.2667 49 1 1.3286 1.6978 -1.5404 50 1 0.7717 1.3530 -3.1982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364394715.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:04 Heat of formation + Delta-G solvation = -79.045508 kcal Electronic energy + Delta-G solvation = -30265.458193 eV Core-core repulsion = 26100.953831 eV Total energy + Delta-G solvation = -4164.504362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89249 -39.66785 -38.56455 -37.68224 -35.02777 -34.20283 -33.39024 -32.03213 -31.79045 -30.87440 -29.15448 -26.34571 -26.10731 -24.86319 -24.38137 -23.58603 -22.55211 -21.07295 -20.20030 -19.44703 -18.63756 -17.86420 -17.26468 -16.86760 -16.24359 -15.87859 -15.36661 -15.29542 -15.02131 -14.89010 -14.71275 -14.44933 -14.31976 -14.05389 -13.82399 -13.75592 -13.55311 -13.31333 -12.86753 -12.66738 -12.53558 -12.41406 -11.97436 -11.89190 -11.77848 -11.69530 -11.49529 -11.41223 -11.19073 -11.14461 -11.02031 -10.85982 -10.65261 -10.32975 -10.04349 -9.95371 -9.50390 -9.26479 -9.13820 -9.03387 -8.63249 -8.16560 -7.84991 -6.25115 -4.35272 2.18730 2.46317 2.93101 3.19517 3.24353 3.28371 3.31994 4.01742 4.26078 4.28568 4.42238 4.46653 4.62023 4.77534 4.82876 4.85605 4.89765 4.98327 5.02822 5.06545 5.13789 5.29181 5.33602 5.36813 5.39348 5.46633 5.47767 5.58313 5.63253 5.64567 5.66078 5.88437 5.92143 5.92615 6.05070 6.08755 6.30563 6.36463 6.39669 6.70396 6.94983 7.09254 7.18865 7.35579 7.58076 7.74592 7.78466 7.94045 8.03583 8.48574 8.67272 9.34934 9.73441 10.80899 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.002311 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.632774 B =12112.469858 C =12722.900758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.109 0.891 4 N -0.727 5.727 5 C 0.521 3.479 6 O -0.512 6.512 7 C -0.001 4.001 8 N -0.449 5.449 9 C -0.019 4.019 10 C 0.249 3.751 11 O -0.569 6.569 12 C -0.534 4.534 13 H 0.067 0.933 14 C 0.070 3.930 15 N -0.896 5.896 16 Si 0.904 3.096 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.281 1.281 20 C 0.002 3.998 21 C 0.518 3.482 22 O -0.536 6.536 23 N -0.609 5.609 24 C 0.111 3.889 25 C -0.136 4.136 26 C -0.120 4.120 27 C -0.139 4.139 28 C 0.100 3.900 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.407 0.593 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.390 0.610 38 H 0.271 0.729 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 -3.823 -23.840 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 H 0.127 0.873 4 N -0.384 5.384 5 C 0.308 3.692 6 O -0.385 6.385 7 C -0.133 4.133 8 N -0.171 5.171 9 C -0.148 4.148 10 C 0.207 3.793 11 O -0.381 6.381 12 C -0.572 4.572 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.537 5.537 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.206 1.206 20 C -0.127 4.127 21 C 0.305 3.695 22 O -0.413 6.413 23 N -0.343 5.343 24 C -0.011 4.011 25 C -0.174 4.174 26 C -0.158 4.158 27 C -0.177 4.177 28 C -0.023 4.023 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.243 0.757 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.246 0.754 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.110 0.890 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.286 -3.352 -23.910 25.526 hybrid contribution 2.199 -0.873 0.154 2.371 sum -6.087 -4.225 -23.756 24.885 Atomic orbital electron populations 1.22142 0.92751 1.03382 1.03478 1.20693 0.95845 0.97956 0.83622 0.87303 1.45912 1.69372 1.14736 1.08420 1.20805 0.77148 0.87557 0.83726 1.90692 1.47765 1.15683 1.84335 1.22615 1.01416 0.96813 0.92468 1.68884 1.29940 1.18967 0.99340 1.24788 0.87378 0.99972 1.02711 1.19323 0.88642 0.84193 0.87138 1.86036 1.40650 1.31950 1.79452 1.21606 1.02425 0.94102 1.39104 0.91450 1.25081 0.98681 0.94789 0.94680 1.69316 1.36474 1.00764 1.47119 0.86341 0.82236 0.78989 0.79257 1.19582 1.20796 1.20642 1.24144 0.99834 0.97520 0.91162 1.20736 0.77348 0.86974 0.84443 1.90680 1.49530 1.16188 1.84881 1.48050 1.60901 1.14949 1.10405 1.21618 0.95607 0.97261 0.86614 1.21934 0.98199 0.95748 1.01564 1.21516 1.00862 0.96191 0.97182 1.21947 0.98898 0.99022 0.97832 1.21932 0.96742 0.80757 1.02859 0.90210 0.91401 0.91615 0.75684 0.88745 0.91193 0.92435 0.91001 0.75412 0.91858 0.90757 0.91672 0.91407 0.88926 0.90579 0.91345 0.91472 0.91694 0.91095 0.90260 0.89006 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.22 37.16 0.34 -1.24 16 2 C 0.13 1.50 2.11 -69.08 -0.15 1.35 16 3 H 0.11 1.34 6.06 -51.93 -0.31 1.02 16 4 N -0.73 -9.82 5.05 -54.93 -0.28 -10.10 16 5 C 0.52 8.89 7.86 -10.98 -0.09 8.81 16 6 O -0.51 -10.66 16.09 5.56 0.09 -10.57 16 7 C 0.00 -0.02 5.30 -4.97 -0.03 -0.04 16 8 N -0.45 -9.84 5.82 -246.07 -1.43 -11.27 16 9 C -0.02 -0.47 7.13 -7.54 -0.05 -0.52 16 10 C 0.25 6.45 1.57 -91.24 -0.14 6.31 16 11 O -0.57 -15.96 13.53 -35.23 -0.48 -16.44 16 12 C -0.53 -14.29 8.69 -34.44 -0.30 -14.59 16 13 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 14 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 15 N -0.90 -24.39 11.02 55.43 0.61 -23.78 16 16 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 C 0.00 0.05 7.09 -7.54 -0.05 -0.01 16 21 C 0.52 5.98 6.92 -10.98 -0.08 5.91 16 22 O -0.54 -7.66 15.40 5.56 0.09 -7.58 16 23 N -0.61 -5.41 2.97 -172.77 -0.51 -5.92 16 24 C 0.11 0.85 6.42 -3.71 -0.02 0.83 16 25 C -0.14 -0.86 6.08 -26.61 -0.16 -1.02 16 26 C -0.12 -0.65 5.88 -26.69 -0.16 -0.81 16 27 C -0.14 -0.85 6.08 -26.61 -0.16 -1.01 16 28 C 0.10 0.66 5.69 -3.71 -0.02 0.64 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.51 7.12 -51.93 -0.37 0.14 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.41 5.03 7.76 -40.82 -0.32 4.72 16 33 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 34 H 0.07 1.12 7.30 -51.93 -0.38 0.74 16 35 H 0.06 1.33 7.38 -51.93 -0.38 0.95 16 36 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.39 11.09 6.33 45.56 0.29 11.38 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.07 1.62 8.14 -51.92 -0.42 1.19 16 40 H 0.07 1.29 7.87 -51.93 -0.41 0.88 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.86 7.04 -51.93 -0.37 0.49 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.09 0.62 5.04 -51.93 -0.26 0.36 16 50 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 395.99 15.07 5.97 5.97 Total: -1.00 -32.87 395.99 -9.68 -42.55 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -7.55 Total: 15.38 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -1.16 Total: 6.35 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -1.61 Total: -51.07 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.30 Total: -34.58 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.87 -9.68 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364394715.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.492 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds