Wall clock time and date at job start Sat Apr 11 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47122 * 2 1 4 4 N 1.46500 * 109.47296 * 119.99968 * 2 1 3 5 5 C 1.34773 * 120.00044 * 275.00396 * 4 2 1 6 6 O 1.21282 * 120.00082 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.46896 * 109.46819 * 179.97438 * 7 5 4 9 9 C 1.47477 * 111.00214 * 265.97109 * 8 7 5 10 10 C 1.53516 * 87.93310 * 221.29774 * 9 8 7 11 11 O 1.42900 * 114.17230 * 272.37714 * 10 9 8 12 12 C 1.50698 * 114.34339 * 139.68002 * 10 9 8 13 13 H 1.08008 * 120.00200 * 266.07760 * 12 10 9 14 14 C 1.37873 * 119.99899 * 86.07767 * 12 10 9 15 15 N 1.31509 * 119.99979 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99902 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47241 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47281 * 120.00278 * 16 14 12 19 19 H 1.48506 * 109.47095 * 240.00117 * 16 14 12 20 20 C 1.47480 * 110.99925 * 169.99721 * 8 7 5 21 21 C 1.50703 * 109.47075 * 240.00208 * 2 1 3 22 22 O 1.21281 * 119.99750 * 262.89333 * 21 2 1 23 23 N 1.34778 * 120.00048 * 82.89448 * 21 2 1 24 24 C 1.46929 * 120.62883 * 174.82268 * 23 21 2 25 25 C 1.53192 * 108.77203 * 233.60497 * 24 23 21 26 26 C 1.53039 * 109.31421 * 305.36534 * 25 24 23 27 27 C 1.53037 * 109.53615 * 61.36676 * 26 25 24 28 28 C 1.46923 * 120.63203 * 354.81924 * 23 21 2 29 29 H 1.09000 * 109.46925 * 302.44679 * 1 2 3 30 30 H 1.09006 * 109.47170 * 62.44507 * 1 2 3 31 31 H 1.09000 * 109.46851 * 182.44646 * 1 2 3 32 32 H 0.96998 * 119.99708 * 95.00083 * 4 2 1 33 33 H 1.08996 * 109.46705 * 299.99836 * 7 5 4 34 34 H 1.08995 * 109.46998 * 59.99860 * 7 5 4 35 35 H 1.08996 * 113.47509 * 336.06320 * 9 8 7 36 36 H 1.09000 * 113.47776 * 106.53251 * 9 8 7 37 37 H 0.96696 * 113.99979 * 273.83960 * 11 10 9 38 38 H 0.97007 * 120.00095 * 179.97438 * 15 14 12 39 39 H 1.09008 * 113.47744 * 253.47559 * 20 8 7 40 40 H 1.09005 * 113.47590 * 23.87655 * 20 8 7 41 41 H 1.09000 * 109.58645 * 113.82025 * 24 23 21 42 42 H 1.08996 * 109.58675 * 353.39589 * 24 23 21 43 43 H 1.09002 * 109.49330 * 185.41222 * 25 24 23 44 44 H 1.09001 * 109.49818 * 65.32273 * 25 24 23 45 45 H 1.09000 * 109.45627 * 181.38904 * 26 25 24 46 46 H 1.08997 * 109.45814 * 301.34446 * 26 25 24 47 47 H 1.08998 * 109.49964 * 58.58851 * 27 26 25 48 48 H 1.08999 * 109.49557 * 178.68253 * 27 26 25 49 49 H 1.09004 * 109.58504 * 6.60550 * 28 23 21 50 50 H 1.09002 * 109.59028 * 246.18336 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6500 -0.7286 3.5874 8 7 2.6998 0.2154 4.7118 9 6 4.0405 0.8165 4.8383 10 6 3.9084 0.6555 6.3592 11 8 3.2709 1.7559 7.0110 12 6 5.1710 0.2060 7.0483 13 1 5.3397 -0.8443 7.2353 14 6 6.1108 1.1356 7.4401 15 7 5.9052 2.4145 7.2129 16 14 7.6755 0.5786 8.2950 17 1 7.6655 -0.9001 8.4314 18 1 8.8533 0.9930 7.4910 19 1 7.7520 1.1999 9.6416 20 6 2.9568 -0.4886 5.9820 21 6 2.0323 -0.7104 -1.2305 22 8 2.3570 -1.8772 -1.1670 23 7 2.1208 -0.0490 -2.4015 24 6 2.7136 -0.6927 -3.5818 25 6 3.8239 0.2094 -4.1298 26 6 3.2571 1.6062 -4.3938 27 6 2.7488 2.2086 -3.0820 28 6 1.6263 1.3292 -2.5221 29 1 -0.3633 0.5514 0.8672 30 1 -0.3634 0.4754 -0.9111 31 1 -0.3633 -1.0267 0.0439 32 1 2.2491 -1.6317 1.1525 33 1 1.9778 -1.5509 3.8324 34 1 3.6493 -1.1203 3.3978 35 1 4.8326 0.2064 4.4043 36 1 4.0827 1.8563 4.5138 37 1 3.8725 2.4750 7.2475 38 1 6.5663 3.0686 7.4889 39 1 2.0804 -0.5550 6.6268 40 1 3.4588 -1.4476 5.8531 41 1 1.9477 -0.8338 -4.3444 42 1 3.1332 -1.6582 -3.2994 43 1 4.2070 -0.2097 -5.0603 44 1 4.6315 0.2762 -3.4008 45 1 4.0391 2.2433 -4.8070 46 1 2.4335 1.5356 -5.1042 47 1 3.5664 2.2566 -2.3628 48 1 2.3667 3.2125 -3.2667 49 1 1.3286 1.6978 -1.5404 50 1 0.7717 1.3530 -3.1982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364394715.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:03 Heat of formation + Delta-G solvation = -105.832229 kcal Electronic energy + Delta-G solvation = -30266.619752 eV Core-core repulsion = 26100.953831 eV Total energy + Delta-G solvation = -4165.665921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83867 -41.16376 -40.00497 -38.49727 -36.33441 -36.01185 -34.12612 -34.08914 -32.60872 -31.83338 -30.61446 -28.01664 -26.97733 -26.70452 -25.35125 -24.46881 -23.79933 -21.88907 -21.37842 -20.53853 -20.22392 -19.31482 -18.74915 -17.90731 -17.44580 -17.16623 -16.77556 -16.57511 -16.50875 -16.17674 -15.69447 -15.50438 -15.42691 -15.27439 -14.97200 -14.85753 -14.42713 -14.23957 -14.08882 -13.85810 -13.78588 -13.48023 -13.38927 -13.37127 -13.21838 -12.97821 -12.76826 -12.66994 -12.42292 -12.25355 -12.22538 -11.92889 -11.89795 -11.68652 -11.54011 -11.17476 -10.98640 -10.88123 -10.64391 -10.28277 -10.09869 -9.76695 -9.65435 -8.24635 -6.43005 1.26404 1.42355 1.45071 1.56777 1.58327 1.65676 2.17547 2.37964 2.95868 3.20331 3.25653 3.68993 3.79752 3.89106 3.92559 3.96154 3.99358 4.03731 4.07032 4.07941 4.26822 4.31648 4.37284 4.42698 4.45253 4.53187 4.56855 4.58292 4.68813 4.78460 4.85916 4.88675 4.90527 4.99683 5.08763 5.11818 5.14663 5.20309 5.27867 5.36343 5.40204 5.40624 5.47055 5.75677 5.95369 6.17052 6.18677 6.47751 6.64404 6.88898 7.19807 7.30445 7.56014 8.81109 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.002311 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.632774 B =12112.469858 C =12722.900758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.125 3.875 3 H 0.102 0.898 4 N -0.713 5.713 5 C 0.524 3.476 6 O -0.557 6.557 7 C -0.004 4.004 8 N -0.464 5.464 9 C -0.008 4.008 10 C 0.218 3.782 11 O -0.585 6.585 12 C -0.553 4.553 13 H 0.073 0.927 14 C 0.022 3.978 15 N -0.922 5.922 16 Si 0.973 3.027 17 H -0.263 1.263 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.016 3.984 21 C 0.517 3.483 22 O -0.569 6.569 23 N -0.603 5.603 24 C 0.108 3.892 25 C -0.133 4.133 26 C -0.117 4.117 27 C -0.139 4.139 28 C 0.094 3.906 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.414 0.586 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.383 0.617 38 H 0.274 0.726 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.048 0.952 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.400 -5.068 -25.614 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 H 0.120 0.880 4 N -0.369 5.369 5 C 0.311 3.689 6 O -0.434 6.434 7 C -0.136 4.136 8 N -0.186 5.186 9 C -0.138 4.138 10 C 0.177 3.823 11 O -0.397 6.397 12 C -0.591 4.591 13 H 0.091 0.909 14 C -0.178 4.178 15 N -0.564 5.564 16 Si 0.797 3.203 17 H -0.187 1.187 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.113 4.113 21 C 0.304 3.696 22 O -0.449 6.449 23 N -0.336 5.336 24 C -0.014 4.014 25 C -0.171 4.171 26 C -0.154 4.154 27 C -0.177 4.177 28 C -0.028 4.028 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.252 0.748 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.238 0.762 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.067 0.933 48 H 0.114 0.886 49 H 0.106 0.894 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.502 -4.615 -25.740 27.498 hybrid contribution 2.227 -0.468 0.598 2.353 sum -6.276 -5.083 -25.142 26.408 Atomic orbital electron populations 1.22079 0.91110 1.03584 1.04150 1.20839 0.97116 0.97344 0.83062 0.88001 1.45761 1.68091 1.14952 1.08110 1.20770 0.76691 0.86939 0.84538 1.90681 1.50115 1.17476 1.85097 1.22717 1.03246 0.96602 0.90989 1.68725 1.28275 1.20626 1.00993 1.24550 0.89110 0.98436 1.01694 1.19751 0.89923 0.84911 0.87694 1.86017 1.41128 1.32534 1.79977 1.21881 1.03040 0.94500 1.39639 0.90884 1.25910 1.01799 0.94809 0.95261 1.69408 1.37469 1.01748 1.47750 0.85285 0.78208 0.78839 0.77926 1.18697 1.20497 1.20484 1.24055 0.99089 0.97152 0.90969 1.20634 0.77330 0.86589 0.85032 1.90665 1.51335 1.17452 1.85430 1.48162 1.59823 1.15671 1.09898 1.21755 0.96568 0.96596 0.86453 1.21915 0.97127 0.96383 1.01649 1.21518 1.01567 0.95329 0.96998 1.21955 0.98064 0.99950 0.97710 1.22165 0.97757 0.79388 1.03455 0.91847 0.88635 0.91345 0.74788 0.85417 0.89593 0.91692 0.94435 0.76243 0.91649 0.90626 0.89059 0.89203 0.90873 0.88845 0.93435 0.90941 0.89965 0.93318 0.88585 0.89413 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.22 71.98 0.66 -2.16 16 2 C 0.12 2.85 2.11 44.25 0.09 2.95 16 3 H 0.10 2.52 6.06 -2.39 -0.01 2.50 16 4 N -0.71 -18.81 5.05 -446.09 -2.25 -21.06 16 5 C 0.52 17.69 7.86 87.66 0.69 18.38 16 6 O -0.56 -23.62 16.09 -3.04 -0.05 -23.66 16 7 C 0.00 -0.13 5.30 85.56 0.45 0.32 16 8 N -0.46 -20.20 5.82 -932.81 -5.43 -25.63 16 9 C -0.01 -0.40 7.13 83.58 0.60 0.19 16 10 C 0.22 11.43 1.57 -11.19 -0.02 11.41 16 11 O -0.58 -33.80 13.53 -148.98 -2.02 -35.81 16 12 C -0.55 -29.51 8.69 25.60 0.22 -29.28 16 13 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 14 C 0.02 1.14 5.39 84.65 0.46 1.60 16 15 N -0.92 -51.12 11.02 21.44 0.24 -50.89 16 16 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 17 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 20 C 0.02 0.68 7.09 83.58 0.59 1.27 16 21 C 0.52 11.58 6.92 87.66 0.61 12.19 16 22 O -0.57 -16.05 15.40 -3.03 -0.05 -16.09 16 23 N -0.60 -9.92 2.97 -818.90 -2.43 -12.35 16 24 C 0.11 1.50 6.42 86.36 0.55 2.05 16 25 C -0.13 -1.48 6.08 30.67 0.19 -1.29 16 26 C -0.12 -0.99 5.88 30.62 0.18 -0.81 16 27 C -0.14 -1.47 6.08 30.67 0.19 -1.28 16 28 C 0.09 1.05 5.69 86.36 0.49 1.55 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.23 7.12 -2.38 -0.02 1.21 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.41 9.81 7.76 -92.71 -0.72 9.09 16 33 H 0.13 3.34 8.08 -2.39 -0.02 3.32 16 34 H 0.09 2.59 7.30 -2.39 -0.02 2.57 16 35 H 0.07 3.02 7.38 -2.39 -0.02 3.00 16 36 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.38 22.66 6.33 -74.06 -0.47 22.20 16 38 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 39 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 40 H 0.09 3.41 7.87 -2.38 -0.02 3.39 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 1.33 7.04 -2.39 -0.02 1.31 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 48 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.09 1.08 5.04 -2.38 -0.01 1.07 16 50 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -72.69 395.99 -4.24 -76.93 By element: Atomic # 1 Polarization: 48.00 SS G_CDS: -0.23 Total: 47.77 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 5.96 Total: 17.08 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -9.88 Total: -109.93 kcal Atomic # 8 Polarization: -73.46 SS G_CDS: -2.11 Total: -75.57 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -72.69 -4.24 -76.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364394715.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.902 kcal (2) G-P(sol) polarization free energy of solvation -72.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds