Wall clock time and date at job start Sat Apr 11 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.50703 * 109.47126 * 89.99796 * 4 3 2 6 6 H 1.08002 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99905 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00302 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47082 * 89.99861 * 9 7 5 11 11 H 1.48492 * 109.47090 * 210.00394 * 9 7 5 12 12 H 1.48499 * 109.46812 * 330.00449 * 9 7 5 13 13 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 14 14 O 1.21283 * 120.00092 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00430 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47259 * 179.97438 * 15 13 3 17 17 C 1.47592 * 110.99949 * 266.09575 * 16 15 13 18 18 C 1.52933 * 87.80039 * 221.72199 * 17 16 15 19 19 C 1.47581 * 110.99932 * 169.99946 * 16 15 13 20 20 C 1.52795 * 113.98280 * 272.02184 * 18 17 16 21 21 N 1.47359 * 108.06317 * 178.96828 * 20 18 17 22 22 C 1.34777 * 121.07120 * 228.27456 * 21 20 18 23 23 C 1.50696 * 120.00043 * 180.02562 * 22 21 20 24 24 O 1.21283 * 119.99539 * 359.97438 * 22 21 20 25 25 C 1.47134 * 117.86471 * 48.25424 * 21 20 18 26 26 C 1.53226 * 108.73217 * 307.69542 * 25 21 20 27 27 O 1.42381 * 114.29095 * 139.67460 * 18 17 16 28 28 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 29 29 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 30 30 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 32 32 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 33 33 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 34 34 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 35 35 H 0.96998 * 119.99775 * 179.97438 * 8 7 5 36 36 H 1.09009 * 109.46564 * 299.99895 * 15 13 3 37 37 H 1.09001 * 109.47030 * 59.99569 * 15 13 3 38 38 H 1.09003 * 113.49865 * 336.45404 * 17 16 15 39 39 H 1.08991 * 113.49785 * 106.98540 * 17 16 15 40 40 H 1.08997 * 113.49671 * 253.00975 * 19 16 15 41 41 H 1.09000 * 113.49857 * 23.48169 * 19 16 15 42 42 H 1.09000 * 109.74599 * 298.61156 * 20 18 17 43 43 H 1.09003 * 109.74528 * 59.27972 * 20 18 17 44 44 H 1.09000 * 109.47534 * 60.00072 * 23 22 21 45 45 H 1.09007 * 109.46938 * 179.97438 * 23 22 21 46 46 H 1.09003 * 109.47438 * 299.99603 * 23 22 21 47 47 H 1.09002 * 109.59845 * 67.46785 * 25 21 20 48 48 H 1.08999 * 109.59335 * 187.92161 * 25 21 20 49 49 H 1.08998 * 109.49295 * 174.17497 * 26 25 21 50 50 H 1.09000 * 109.49072 * 294.22561 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1491 2.3896 2.8780 8 7 5.3911 2.1825 3.2579 9 14 3.0128 3.4352 3.9293 10 1 2.3070 2.5689 4.9075 11 1 3.8103 4.4552 4.6563 12 1 2.0177 4.1124 3.0597 13 6 2.2483 2.0147 -1.1672 14 8 2.6530 3.1580 -1.1672 15 6 2.0026 1.3025 -2.4723 16 7 2.3254 2.2008 -3.5887 17 6 1.1221 2.9152 -4.0578 18 6 1.6064 2.6709 -5.4877 19 6 2.3272 1.4709 -4.8714 20 6 2.5454 3.7530 -6.0187 21 7 2.9486 3.3776 -7.3855 22 6 4.2425 3.4062 -7.7616 23 6 4.6277 3.0179 -9.1658 24 8 5.0966 3.7454 -6.9702 25 6 1.8933 2.9700 -8.3263 26 6 1.0514 1.8683 -7.6742 27 8 0.5737 2.3252 -6.4049 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 2.0955 3.1410 1.1384 34 1 1.5817 1.6877 2.0284 35 1 5.7171 2.5730 4.0838 36 1 2.6328 0.4146 -2.5259 37 1 0.9548 1.0085 -2.5342 38 1 0.1910 2.4005 -3.8204 39 1 1.1056 3.9686 -3.7785 40 1 3.3255 1.3081 -5.2774 41 1 1.7251 0.5624 -4.8553 42 1 2.0283 4.7123 -6.0378 43 1 3.4261 3.8221 -5.3802 44 1 4.1327 3.6811 -9.8751 45 1 5.7082 3.1028 -9.2828 46 1 4.3212 1.9892 -9.3554 47 1 1.2592 3.8259 -8.5576 48 1 2.3466 2.5901 -9.2418 49 1 0.2043 1.6293 -8.3171 50 1 1.6639 0.9776 -7.5336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001393653017.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:11 Heat of formation + Delta-G solvation = -50.137004 kcal Electronic energy + Delta-G solvation = -30809.496749 eV Core-core repulsion = 26646.245955 eV Total energy + Delta-G solvation = -4163.250795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49689 -39.76611 -38.84528 -37.56110 -35.28314 -35.09788 -32.75338 -32.00217 -30.43773 -30.25188 -29.46176 -27.71956 -26.43887 -26.28224 -24.44957 -23.25354 -22.95782 -21.73755 -19.96272 -19.16938 -18.49433 -17.46411 -17.22037 -16.88466 -16.64758 -16.27971 -16.04701 -15.70632 -15.44532 -15.24802 -14.88040 -14.43075 -14.10802 -13.94937 -13.80837 -13.62879 -13.48016 -13.30759 -13.11908 -12.86457 -12.71683 -12.49511 -12.41696 -12.32924 -12.10009 -11.78247 -11.67993 -11.51478 -11.45213 -11.24588 -10.95391 -10.86033 -10.70519 -10.45121 -10.22943 -10.05799 -10.05580 -9.49243 -9.19717 -8.92048 -8.69509 -8.54436 -7.66303 -6.03594 -4.01942 2.34407 2.52883 3.12790 3.29909 3.38253 3.40840 3.43133 3.62547 4.04012 4.10928 4.18751 4.27329 4.44139 4.48406 4.58184 4.71433 4.77219 4.83926 4.90235 4.95864 5.12333 5.13785 5.16874 5.21673 5.23028 5.30181 5.36977 5.41284 5.44244 5.49833 5.53959 5.54803 5.68414 5.72857 5.75754 5.95255 6.02251 6.14380 6.15419 6.37733 6.65188 6.77046 6.84103 7.02907 7.04051 7.41501 7.66717 7.87388 8.31391 8.52750 8.99579 9.08618 9.56861 11.10013 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.002666 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.441166 B =10501.342607 C =11484.789575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.597 5.597 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.875 3.125 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.511 3.489 14 O -0.517 6.517 15 C 0.004 3.996 16 N -0.435 5.435 17 C 0.024 3.976 18 C 0.073 3.927 19 C -0.021 4.021 20 C 0.115 3.885 21 N -0.620 5.620 22 C 0.511 3.489 23 C -0.173 4.173 24 O -0.532 6.532 25 C 0.072 3.928 26 C 0.046 3.954 27 O -0.360 6.360 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.096 0.904 49 H 0.107 0.893 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.218 -4.702 -26.969 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.098 3.902 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.188 1.188 13 C 0.296 3.704 14 O -0.392 6.392 15 C -0.128 4.128 16 N -0.158 5.158 17 C -0.105 4.105 18 C 0.032 3.968 19 C -0.150 4.150 20 C -0.007 4.007 21 N -0.356 5.356 22 C 0.300 3.700 23 C -0.232 4.232 24 O -0.408 6.408 25 C -0.051 4.051 26 C -0.031 4.031 27 O -0.278 6.278 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.138 0.862 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.106 0.894 47 H 0.098 0.902 48 H 0.114 0.886 49 H 0.125 0.875 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.971 -3.475 -26.085 28.911 hybrid contribution -1.034 -0.290 0.405 1.148 sum -13.005 -3.765 -25.680 29.031 Atomic orbital electron populations 1.22234 0.96871 1.01494 1.02148 1.21425 0.93286 0.84104 1.03003 1.47944 1.64716 1.13350 1.06997 1.19615 0.97044 0.93591 0.79968 1.21346 0.95439 1.32736 1.07013 0.90800 1.24863 0.95017 0.95783 0.97399 1.69903 1.15199 1.45069 1.23505 0.86862 0.81316 0.80901 0.80757 1.20181 1.20966 1.18842 1.19994 0.78784 0.87137 0.84437 1.90682 1.43929 1.17820 1.86751 1.22698 1.01140 0.96729 0.92234 1.68869 1.29771 1.16928 1.00232 1.23965 0.93918 1.03039 0.89608 1.22925 0.89182 0.95342 0.89371 1.24413 1.01974 0.96716 0.91943 1.21851 0.99937 0.96009 0.82913 1.48256 1.06514 1.68011 1.12781 1.20849 0.81398 0.77285 0.90516 1.21942 1.04694 1.03177 0.93392 1.90795 1.48609 1.46912 1.54459 1.22426 0.90515 0.99104 0.93082 1.22958 0.99091 0.95572 0.85488 1.87951 1.31167 1.85086 1.23602 0.92146 0.93205 0.92020 0.91699 0.89698 0.94209 0.95815 0.92610 0.88231 0.91141 0.89974 0.88062 0.89274 0.90436 0.90307 0.86237 0.89414 0.88792 0.89438 0.90236 0.88566 0.87484 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.11 1.64 5.94 -4.04 -0.02 1.62 16 3 N -0.60 -12.40 2.46 -175.05 -0.43 -12.83 16 4 C 0.22 5.44 4.23 -5.19 -0.02 5.42 16 5 C -0.53 -15.51 9.94 -34.44 -0.34 -15.85 16 6 H 0.07 2.39 8.06 -52.49 -0.42 1.97 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 9 Si 0.87 22.02 27.47 -169.99 -4.67 17.35 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 13 C 0.51 10.69 7.74 -10.99 -0.09 10.60 16 14 O -0.52 -13.27 16.01 5.55 0.09 -13.18 16 15 C 0.00 0.06 3.84 -4.98 -0.02 0.04 16 16 N -0.43 -6.56 5.62 -246.08 -1.38 -7.95 16 17 C 0.02 0.30 7.14 -7.29 -0.05 0.25 16 18 C 0.07 0.80 1.35 -90.79 -0.12 0.68 16 19 C -0.02 -0.25 6.65 -7.29 -0.05 -0.30 16 20 C 0.12 1.35 5.75 -3.68 -0.02 1.32 16 21 N -0.62 -5.84 3.03 -172.47 -0.52 -6.36 16 22 C 0.51 5.54 7.82 -10.99 -0.09 5.46 16 23 C -0.17 -1.00 8.69 36.00 0.31 -0.69 16 24 O -0.53 -8.65 16.58 5.56 0.09 -8.56 16 25 C 0.07 0.39 6.50 -3.58 -0.02 0.37 16 26 C 0.05 0.27 6.91 37.27 0.26 0.53 16 27 O -0.36 -3.43 10.54 -35.23 -0.37 -3.80 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.58 7.26 -51.92 -0.38 0.20 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 32 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 33 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 34 H 0.02 0.55 7.50 -51.93 -0.39 0.17 16 35 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 36 H 0.10 1.38 7.34 -51.92 -0.38 1.00 16 37 H 0.07 0.87 6.38 -51.93 -0.33 0.54 16 38 H 0.08 0.94 7.42 -51.93 -0.39 0.55 16 39 H 0.10 1.36 8.10 -51.93 -0.42 0.94 16 40 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 41 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.12 1.81 6.92 -51.93 -0.36 1.45 16 44 H 0.09 0.32 7.99 -51.93 -0.41 -0.10 16 45 H 0.09 0.59 8.12 -51.92 -0.42 0.17 16 46 H 0.09 0.32 7.69 -51.93 -0.40 -0.08 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.10 0.25 6.03 -51.93 -0.31 -0.07 16 49 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.34 7.88 -51.93 -0.41 -0.07 16 LS Contribution 397.33 15.07 5.99 5.99 Total: -1.00 -39.27 397.33 -8.65 -47.93 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.23 Total: -0.77 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 0.01 Total: 9.78 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -1.56 Total: -54.74 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.19 Total: -25.54 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.27 -8.65 -47.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001393653017.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.210 kcal (2) G-P(sol) polarization free energy of solvation -39.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds