Wall clock time and date at job start Sat Apr 11 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.50703 * 109.47126 * 89.99796 * 4 3 2 6 6 H 1.08002 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99905 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00302 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47082 * 89.99861 * 9 7 5 11 11 H 1.48492 * 109.47090 * 210.00394 * 9 7 5 12 12 H 1.48499 * 109.46812 * 330.00449 * 9 7 5 13 13 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 14 14 O 1.21283 * 120.00092 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00430 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47259 * 179.97438 * 15 13 3 17 17 C 1.47592 * 110.99949 * 266.09575 * 16 15 13 18 18 C 1.52933 * 87.80039 * 221.72199 * 17 16 15 19 19 C 1.47581 * 110.99932 * 169.99946 * 16 15 13 20 20 C 1.52795 * 113.98280 * 272.02184 * 18 17 16 21 21 N 1.47359 * 108.06317 * 178.96828 * 20 18 17 22 22 C 1.34777 * 121.07120 * 228.27456 * 21 20 18 23 23 C 1.50696 * 120.00043 * 180.02562 * 22 21 20 24 24 O 1.21283 * 119.99539 * 359.97438 * 22 21 20 25 25 C 1.47134 * 117.86471 * 48.25424 * 21 20 18 26 26 C 1.53226 * 108.73217 * 307.69542 * 25 21 20 27 27 O 1.42381 * 114.29095 * 139.67460 * 18 17 16 28 28 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 29 29 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 30 30 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 32 32 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 33 33 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 34 34 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 35 35 H 0.96998 * 119.99775 * 179.97438 * 8 7 5 36 36 H 1.09009 * 109.46564 * 299.99895 * 15 13 3 37 37 H 1.09001 * 109.47030 * 59.99569 * 15 13 3 38 38 H 1.09003 * 113.49865 * 336.45404 * 17 16 15 39 39 H 1.08991 * 113.49785 * 106.98540 * 17 16 15 40 40 H 1.08997 * 113.49671 * 253.00975 * 19 16 15 41 41 H 1.09000 * 113.49857 * 23.48169 * 19 16 15 42 42 H 1.09000 * 109.74599 * 298.61156 * 20 18 17 43 43 H 1.09003 * 109.74528 * 59.27972 * 20 18 17 44 44 H 1.09000 * 109.47534 * 60.00072 * 23 22 21 45 45 H 1.09007 * 109.46938 * 179.97438 * 23 22 21 46 46 H 1.09003 * 109.47438 * 299.99603 * 23 22 21 47 47 H 1.09002 * 109.59845 * 67.46785 * 25 21 20 48 48 H 1.08999 * 109.59335 * 187.92161 * 25 21 20 49 49 H 1.08998 * 109.49295 * 174.17497 * 26 25 21 50 50 H 1.09000 * 109.49072 * 294.22561 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1491 2.3896 2.8780 8 7 5.3911 2.1825 3.2579 9 14 3.0128 3.4352 3.9293 10 1 2.3070 2.5689 4.9075 11 1 3.8103 4.4552 4.6563 12 1 2.0177 4.1124 3.0597 13 6 2.2483 2.0147 -1.1672 14 8 2.6530 3.1580 -1.1672 15 6 2.0026 1.3025 -2.4723 16 7 2.3254 2.2008 -3.5887 17 6 1.1221 2.9152 -4.0578 18 6 1.6064 2.6709 -5.4877 19 6 2.3272 1.4709 -4.8714 20 6 2.5454 3.7530 -6.0187 21 7 2.9486 3.3776 -7.3855 22 6 4.2425 3.4062 -7.7616 23 6 4.6277 3.0179 -9.1658 24 8 5.0966 3.7454 -6.9702 25 6 1.8933 2.9700 -8.3263 26 6 1.0514 1.8683 -7.6742 27 8 0.5737 2.3252 -6.4049 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 2.0955 3.1410 1.1384 34 1 1.5817 1.6877 2.0284 35 1 5.7171 2.5730 4.0838 36 1 2.6328 0.4146 -2.5259 37 1 0.9548 1.0085 -2.5342 38 1 0.1910 2.4005 -3.8204 39 1 1.1056 3.9686 -3.7785 40 1 3.3255 1.3081 -5.2774 41 1 1.7251 0.5624 -4.8553 42 1 2.0283 4.7123 -6.0378 43 1 3.4261 3.8221 -5.3802 44 1 4.1327 3.6811 -9.8751 45 1 5.7082 3.1028 -9.2828 46 1 4.3212 1.9892 -9.3554 47 1 1.2592 3.8259 -8.5576 48 1 2.3466 2.5901 -9.2418 49 1 0.2043 1.6293 -8.3171 50 1 1.6639 0.9776 -7.5336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001393653017.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:10 Heat of formation + Delta-G solvation = -82.918945 kcal Electronic energy + Delta-G solvation = -30810.918281 eV Core-core repulsion = 26646.245955 eV Total energy + Delta-G solvation = -4164.672326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.40458 -40.86799 -40.17523 -38.44300 -36.93322 -35.90315 -34.89446 -33.02127 -31.88900 -31.01592 -30.40707 -29.27649 -27.46744 -27.22065 -25.50718 -24.44186 -24.18837 -23.22026 -20.77730 -20.00480 -19.92092 -19.12668 -18.25318 -18.15027 -18.05844 -17.32790 -16.91865 -16.79875 -16.70456 -16.18109 -16.15417 -15.83886 -15.25637 -15.01987 -14.78169 -14.69103 -14.64432 -14.52198 -14.22331 -14.03745 -13.86398 -13.65418 -13.59265 -13.36738 -13.18778 -13.05718 -12.90221 -12.62672 -12.54996 -12.39440 -12.35644 -12.08532 -12.01568 -11.85068 -11.77607 -11.72718 -11.03437 -10.90843 -10.83958 -10.67413 -9.95350 -9.67979 -9.40519 -8.35847 -6.40909 1.28710 1.34358 1.45216 1.54972 1.79920 1.82174 2.15942 2.29607 2.45692 2.97258 3.00289 3.18883 3.41520 3.59244 3.66980 3.87770 3.94597 4.02221 4.06544 4.14083 4.21031 4.32265 4.33023 4.38281 4.40797 4.44179 4.50968 4.57457 4.61451 4.63080 4.69098 4.72924 4.75767 4.81666 4.90545 4.92603 4.99158 5.00622 5.07745 5.15377 5.28935 5.37867 5.45943 5.63844 5.79567 6.08735 6.23502 6.32441 6.60447 6.72958 7.09023 7.20376 7.47251 8.81618 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.002666 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.441166 B =10501.342607 C =11484.789575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.604 5.604 4 C 0.228 3.772 5 C -0.536 4.536 6 H 0.025 0.975 7 C 0.008 3.992 8 N -0.947 5.947 9 Si 0.950 3.050 10 H -0.248 1.248 11 H -0.282 1.282 12 H -0.257 1.257 13 C 0.499 3.501 14 O -0.579 6.579 15 C 0.020 3.980 16 N -0.480 5.480 17 C 0.022 3.978 18 C 0.094 3.906 19 C -0.010 4.010 20 C 0.114 3.886 21 N -0.617 5.617 22 C 0.500 3.500 23 C -0.162 4.162 24 O -0.603 6.603 25 C 0.068 3.932 26 C 0.038 3.962 27 O -0.366 6.366 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.016 0.984 34 H 0.048 0.952 35 H 0.268 0.732 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.085 0.915 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.134 0.866 49 H 0.142 0.858 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.009 -6.520 -29.521 34.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.336 5.336 4 C 0.105 3.895 5 C -0.575 4.575 6 H 0.043 0.957 7 C -0.189 4.189 8 N -0.588 5.588 9 Si 0.773 3.227 10 H -0.172 1.172 11 H -0.208 1.208 12 H -0.181 1.181 13 C 0.287 3.713 14 O -0.459 6.459 15 C -0.111 4.111 16 N -0.203 5.203 17 C -0.107 4.107 18 C 0.052 3.948 19 C -0.139 4.139 20 C -0.010 4.010 21 N -0.351 5.351 22 C 0.291 3.709 23 C -0.221 4.221 24 O -0.484 6.484 25 C -0.054 4.054 26 C -0.038 4.038 27 O -0.284 6.284 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.136 0.864 45 H 0.104 0.896 46 H 0.136 0.864 47 H 0.108 0.892 48 H 0.152 0.848 49 H 0.160 0.840 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.834 -5.372 -28.695 33.211 hybrid contribution 0.199 0.222 1.090 1.131 sum -15.635 -5.149 -27.605 32.140 Atomic orbital electron populations 1.22150 0.93699 1.03703 1.02131 1.21785 0.95800 0.81075 1.03848 1.48086 1.64513 1.15302 1.05681 1.19240 0.94541 0.92997 0.82677 1.21585 0.97245 1.32026 1.06613 0.95695 1.25903 0.96821 0.97170 0.99038 1.70065 1.17556 1.46656 1.24477 0.85674 0.79057 0.79068 0.78933 1.17157 1.20773 1.18093 1.21122 0.77217 0.86730 0.86239 1.90643 1.46665 1.20734 1.87810 1.22611 1.03620 0.96008 0.88896 1.68785 1.31633 1.18389 1.01527 1.23978 0.93922 1.01974 0.90843 1.22454 0.88847 0.94400 0.89098 1.24383 1.01750 0.97758 0.89973 1.21602 0.98359 0.96884 0.84140 1.48402 1.07286 1.67026 1.12342 1.21897 0.81055 0.75972 0.91971 1.21970 1.04578 1.05511 0.90028 1.90765 1.50619 1.50256 1.56772 1.22790 0.89627 0.99602 0.93337 1.23324 1.00671 0.95567 0.84236 1.87938 1.30469 1.85148 1.24823 0.93440 0.91985 0.88606 0.88813 0.91044 0.96596 0.93412 0.92271 0.86839 0.87265 0.87981 0.90112 0.90781 0.87679 0.90256 0.90711 0.86356 0.89634 0.86354 0.89230 0.84789 0.84037 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 10.24 71.98 0.74 -2.65 16 2 C 0.10 2.85 5.94 86.38 0.51 3.36 16 3 N -0.60 -25.28 2.46 -826.14 -2.03 -27.30 16 4 C 0.23 11.59 4.23 85.63 0.36 11.96 16 5 C -0.54 -33.02 9.94 25.60 0.25 -32.76 16 6 H 0.02 1.72 8.06 -2.91 -0.02 1.69 16 7 C 0.01 0.51 5.47 84.65 0.46 0.98 16 8 N -0.95 -62.20 13.96 21.45 0.30 -61.90 16 9 Si 0.95 46.18 27.47 68.60 1.88 48.06 16 10 H -0.25 -10.87 7.11 99.48 0.71 -10.17 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.26 -12.10 6.54 99.48 0.65 -11.45 16 13 C 0.50 21.32 7.74 87.66 0.68 22.00 16 14 O -0.58 -31.45 16.01 -3.04 -0.05 -31.50 16 15 C 0.02 0.58 3.84 85.56 0.33 0.90 16 16 N -0.48 -14.63 5.62 -933.18 -5.25 -19.88 16 17 C 0.02 0.55 7.14 83.68 0.60 1.14 16 18 C 0.09 1.97 1.35 -10.90 -0.01 1.96 16 19 C -0.01 -0.22 6.65 83.69 0.56 0.34 16 20 C 0.11 2.78 5.75 86.15 0.50 3.28 16 21 N -0.62 -11.08 3.03 -817.96 -2.48 -13.56 16 22 C 0.50 10.83 7.82 87.66 0.69 11.52 16 23 C -0.16 -1.47 8.69 71.23 0.62 -0.85 16 24 O -0.60 -21.17 16.58 -3.04 -0.05 -21.22 16 25 C 0.07 0.49 6.50 86.33 0.56 1.05 16 26 C 0.04 0.30 6.91 72.06 0.50 0.79 16 27 O -0.37 -5.84 10.54 -148.98 -1.57 -7.41 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.19 7.26 -2.38 -0.02 1.17 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 2.19 6.43 -2.39 -0.02 2.18 16 32 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 33 H 0.02 0.89 6.48 -2.39 -0.02 0.87 16 34 H 0.05 2.19 7.50 -2.38 -0.02 2.18 16 35 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 36 H 0.11 2.96 7.34 -2.38 -0.02 2.94 16 37 H 0.11 2.30 6.38 -2.39 -0.02 2.28 16 38 H 0.10 2.09 7.42 -2.39 -0.02 2.08 16 39 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 40 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 41 H 0.11 1.74 7.91 -2.39 -0.02 1.72 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.07 2.54 6.92 -2.39 -0.02 2.52 16 44 H 0.12 0.38 7.99 -2.39 -0.02 0.36 16 45 H 0.08 0.97 8.12 -2.38 -0.02 0.95 16 46 H 0.12 0.36 7.69 -2.39 -0.02 0.35 16 47 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.13 -0.03 6.03 -2.39 -0.01 -0.04 16 49 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 50 H 0.06 0.46 7.88 -2.39 -0.02 0.44 16 Total: -1.00 -96.45 397.33 -1.03 -97.48 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.87 Total: 14.23 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: 7.34 Total: 23.01 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -9.45 Total: -122.64 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -1.67 Total: -60.14 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.88 Total: 48.06 kcal Total: -96.45 -1.03 -97.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001393653017.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.561 kcal (2) G-P(sol) polarization free energy of solvation -96.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds