Wall clock time and date at job start Sat Apr 11 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46493 * 119.99811 * 270.00105 * 3 2 1 5 5 C 1.50698 * 109.47208 * 89.99882 * 4 3 2 6 6 H 1.08002 * 120.00208 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99967 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99955 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00095 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47055 * 89.99943 * 9 7 5 11 11 H 1.48498 * 109.47435 * 210.00418 * 9 7 5 12 12 H 1.48505 * 109.47003 * 330.00249 * 9 7 5 13 13 C 1.34778 * 120.00058 * 89.99676 * 3 2 1 14 14 O 1.21273 * 120.00182 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00009 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47197 * 179.97438 * 15 13 3 17 17 C 1.47623 * 110.99902 * 266.16213 * 16 15 13 18 18 C 1.52745 * 87.73772 * 221.88089 * 17 16 15 19 19 C 1.47626 * 111.00130 * 170.00441 * 16 15 13 20 20 C 1.53666 * 115.20270 * 140.80145 * 18 17 16 21 21 C 1.55488 * 101.97604 * 111.17982 * 20 18 17 22 22 H 1.08997 * 111.10444 * 151.44188 * 21 20 18 23 23 N 1.46500 * 111.13973 * 275.53523 * 21 20 18 24 24 C 1.34776 * 120.00009 * 198.13015 * 23 21 20 25 25 C 1.50698 * 120.00148 * 180.02562 * 24 23 21 26 26 O 1.21284 * 119.99525 * 0.02562 * 24 23 21 27 27 C 1.55008 * 101.04253 * 33.49589 * 21 20 18 28 28 O 1.42411 * 116.07066 * 269.18832 * 18 17 16 29 29 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 33 33 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 34 34 H 1.09007 * 109.47237 * 209.99803 * 4 3 2 35 35 H 1.08995 * 109.47637 * 329.99646 * 4 3 2 36 36 H 0.96996 * 120.00006 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47328 * 300.00634 * 15 13 3 38 38 H 1.09009 * 109.47181 * 59.99924 * 15 13 3 39 39 H 1.08995 * 113.51042 * 336.59447 * 17 16 15 40 40 H 1.09004 * 113.50480 * 107.16647 * 17 16 15 41 41 H 1.09005 * 113.50367 * 252.84321 * 19 16 15 42 42 H 1.08996 * 113.50585 * 23.33388 * 19 16 15 43 43 H 1.08999 * 110.93037 * 229.35060 * 20 18 17 44 44 H 1.09003 * 110.93031 * 353.00835 * 20 18 17 45 45 H 0.97002 * 120.00188 * 18.13889 * 23 21 20 46 46 H 1.09001 * 109.47362 * 90.00058 * 25 24 23 47 47 H 1.08998 * 109.46983 * 210.00483 * 25 24 23 48 48 H 1.09001 * 109.46973 * 329.99850 * 25 24 23 49 49 H 1.08996 * 110.30242 * 205.04062 * 27 21 20 50 50 H 1.09004 * 110.38821 * 82.93394 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0067 2.7822 -1.7037 6 1 0.1156 2.7247 -1.0962 7 6 0.9950 3.5048 -2.8780 8 7 -0.1011 4.1243 -3.2580 9 14 2.5358 3.6037 -3.9293 10 1 2.5403 2.4863 -4.9075 11 1 2.5568 4.8983 -4.6564 12 1 3.7355 3.5049 -3.0596 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3061 2.4723 16 7 2.3109 2.2059 3.5889 17 6 3.6987 2.0054 4.0504 18 6 3.1743 2.1126 5.4810 19 6 1.8565 1.6370 4.8731 20 6 3.8177 1.1463 6.4878 21 6 4.6312 2.1159 7.3909 22 1 4.7352 1.7179 8.4003 23 7 5.9417 2.4091 6.8054 24 6 6.9254 2.9159 7.5747 25 6 8.2733 3.2180 6.9723 26 8 6.7258 3.1289 8.7519 27 6 3.7202 3.3699 7.3764 28 8 3.1672 3.4186 6.0488 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.0645 2.7985 -1.1384 35 1 2.5506 1.3452 -2.0283 36 1 -0.1093 4.6329 -4.0838 37 1 0.9444 1.0114 2.5302 38 1 2.6228 0.4187 2.5299 39 1 4.1000 1.0217 3.8070 40 1 4.3710 2.8170 3.7718 41 1 0.9812 2.1390 5.2855 42 1 1.7512 0.5523 4.8550 43 1 3.0564 0.6224 7.0657 44 1 4.4763 0.4395 5.9830 45 1 6.1015 2.2385 5.8639 46 1 8.2842 4.2430 6.6015 47 1 9.0458 3.0982 7.7318 48 1 8.4649 2.5313 6.1478 49 1 4.3076 4.2665 7.5745 50 1 2.9241 3.2695 8.1142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001447397950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:33 Heat of formation + Delta-G solvation = -59.690161 kcal Electronic energy + Delta-G solvation = -30369.968997 eV Core-core repulsion = 26206.303946 eV Total energy + Delta-G solvation = -4163.665051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45679 -39.90674 -38.98394 -37.57000 -35.28208 -34.80087 -32.68216 -31.87535 -30.96854 -30.14644 -29.27715 -28.02927 -26.65162 -26.26839 -23.67342 -22.75783 -22.40369 -21.56535 -20.99112 -19.81039 -18.43658 -17.39840 -17.28670 -16.93723 -16.58186 -16.38491 -15.94203 -15.57829 -15.48842 -15.32462 -14.75443 -14.55480 -14.02612 -14.00020 -13.83897 -13.46459 -13.24704 -13.18153 -12.99923 -12.80255 -12.73832 -12.52237 -12.46593 -12.14695 -12.09272 -11.96647 -11.67861 -11.48282 -11.43620 -11.22142 -10.99284 -10.84733 -10.67130 -10.38603 -10.28485 -10.08488 -9.86151 -9.45424 -9.37947 -9.14076 -8.63140 -8.55836 -7.68376 -6.05120 -4.02973 2.22863 2.73894 3.23226 3.27880 3.36500 3.38487 3.40750 3.67737 3.84604 4.05513 4.19088 4.25328 4.42376 4.43452 4.52240 4.81652 4.83124 4.87456 4.99790 5.02226 5.07742 5.16600 5.20154 5.21664 5.24816 5.27428 5.29931 5.36093 5.44822 5.47395 5.52652 5.64981 5.67768 5.75437 5.78501 6.01392 6.07804 6.23537 6.29600 6.63958 6.77534 6.82272 6.91738 7.03111 7.06353 7.40355 7.65206 7.79723 8.29681 8.51443 8.98622 9.07603 9.55524 11.08275 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.002432 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.166256 B =11508.043407 C =12308.576409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.113 3.887 3 N -0.599 5.599 4 C 0.217 3.783 5 C -0.524 4.524 6 H 0.076 0.924 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.511 3.489 14 O -0.517 6.517 15 C 0.000 4.000 16 N -0.432 5.432 17 C -0.004 4.004 18 C 0.083 3.917 19 C -0.009 4.009 20 C -0.146 4.146 21 C 0.110 3.890 22 H 0.109 0.891 23 N -0.719 5.719 24 C 0.514 3.486 25 C -0.174 4.174 26 O -0.548 6.548 27 C 0.037 3.963 28 O -0.331 6.331 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.023 0.977 36 H 0.264 0.736 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.404 0.596 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.569 -12.711 20.734 26.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.011 4.011 3 N -0.332 5.332 4 C 0.097 3.903 5 C -0.562 4.562 6 H 0.094 0.906 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.296 3.704 14 O -0.391 6.391 15 C -0.132 4.132 16 N -0.153 5.153 17 C -0.133 4.133 18 C 0.042 3.958 19 C -0.138 4.138 20 C -0.184 4.184 21 C 0.005 3.995 22 H 0.126 0.874 23 N -0.372 5.372 24 C 0.301 3.699 25 C -0.233 4.233 26 O -0.425 6.425 27 C -0.040 4.040 28 O -0.249 6.249 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.239 0.761 46 H 0.115 0.885 47 H 0.112 0.888 48 H 0.100 0.900 49 H 0.108 0.892 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.261 -10.971 21.050 26.273 hybrid contribution 0.794 -1.044 -1.061 1.688 sum 12.056 -12.015 19.989 26.254 Atomic orbital electron populations 1.22245 0.96011 1.00865 1.03869 1.21384 0.94876 0.83438 1.01403 1.47984 1.64929 1.13285 1.07037 1.19638 0.98211 0.92552 0.79919 1.21357 0.97337 1.30602 1.06929 0.90556 1.24870 0.95923 0.94877 0.97454 1.69894 1.27190 1.33099 1.23505 0.86877 0.84449 0.77809 0.80771 1.20233 1.21014 1.18909 1.20015 0.79015 0.86924 0.84455 1.90684 1.44717 1.16992 1.86735 1.22738 1.03093 0.94704 0.92688 1.68932 1.05643 1.40721 1.00034 1.24340 0.94332 1.01853 0.92765 1.22564 0.96452 0.83994 0.92819 1.24276 0.99141 0.99021 0.91387 1.23302 0.99866 0.97780 0.97459 1.22560 0.83000 0.95221 0.98730 0.87356 1.46017 1.11672 1.65924 1.13553 1.20878 0.86409 0.76035 0.86556 1.21897 0.94044 1.04401 1.03007 1.90730 1.83151 1.52216 1.16452 1.23962 0.95845 0.98924 0.85300 1.88500 1.82677 1.25550 1.28195 0.92860 0.90121 0.93221 0.92220 0.90796 0.94281 0.95889 0.92642 0.88237 0.91622 0.90523 0.88634 0.88634 0.90334 0.88183 0.88900 0.76055 0.88516 0.88783 0.90040 0.89161 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.11 1.69 5.98 -4.04 -0.02 1.66 16 3 N -0.60 -12.09 2.46 -175.07 -0.43 -12.52 16 4 C 0.22 5.29 4.27 -5.20 -0.02 5.27 16 5 C -0.52 -14.99 9.48 -34.44 -0.33 -15.32 16 6 H 0.08 2.39 7.67 -52.49 -0.40 1.99 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 9 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 13 C 0.51 10.41 7.74 -10.98 -0.09 10.33 16 14 O -0.52 -13.14 16.01 5.56 0.09 -13.05 16 15 C 0.00 -0.01 3.85 -4.98 -0.02 -0.03 16 16 N -0.43 -6.32 5.82 -246.10 -1.43 -7.75 16 17 C 0.00 -0.04 7.20 -7.16 -0.05 -0.09 16 18 C 0.08 0.80 1.73 -90.55 -0.16 0.64 16 19 C -0.01 -0.09 7.21 -7.17 -0.05 -0.15 16 20 C -0.15 -0.87 5.97 -25.06 -0.15 -1.02 16 21 C 0.11 0.81 3.37 -65.55 -0.22 0.59 16 22 H 0.11 0.81 7.74 -51.93 -0.40 0.40 16 23 N -0.72 -5.10 5.24 -51.51 -0.27 -5.37 16 24 C 0.51 4.40 7.94 -10.99 -0.09 4.32 16 25 C -0.17 -0.89 10.30 36.00 0.37 -0.52 16 26 O -0.55 -6.93 16.85 5.55 0.09 -6.84 16 27 C 0.04 0.35 7.49 38.22 0.29 0.64 16 28 O -0.33 -4.09 11.17 -35.23 -0.39 -4.48 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.53 7.26 -51.93 -0.38 1.16 16 31 H 0.05 0.75 7.22 -51.93 -0.38 0.38 16 32 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 33 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 34 H 0.04 1.04 6.48 -51.93 -0.34 0.70 16 35 H 0.02 0.52 7.32 -51.93 -0.38 0.14 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.10 1.32 7.13 -51.93 -0.37 0.95 16 38 H 0.07 0.72 6.56 -51.92 -0.34 0.38 16 39 H 0.08 0.66 7.22 -51.93 -0.37 0.28 16 40 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.08 0.59 7.89 -51.93 -0.41 0.18 16 43 H 0.10 0.45 8.12 -51.93 -0.42 0.03 16 44 H 0.09 0.41 7.81 -51.93 -0.41 0.01 16 45 H 0.40 2.22 8.62 -40.82 -0.35 1.87 16 46 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -39.12 402.79 -8.66 -47.78 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -8.24 Total: 0.20 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -0.25 Total: 6.09 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -1.36 Total: -52.74 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.21 Total: -24.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -39.12 -8.66 -47.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447397950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.908 kcal (2) G-P(sol) polarization free energy of solvation -39.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds