Wall clock time and date at job start Sat Apr 11 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46493 * 119.99811 * 270.00105 * 3 2 1 5 5 C 1.50698 * 109.47208 * 89.99882 * 4 3 2 6 6 H 1.08002 * 120.00208 * 359.97438 * 5 4 3 7 7 C 1.37886 * 119.99967 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99955 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00095 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47055 * 89.99943 * 9 7 5 11 11 H 1.48498 * 109.47435 * 210.00418 * 9 7 5 12 12 H 1.48505 * 109.47003 * 330.00249 * 9 7 5 13 13 C 1.34778 * 120.00058 * 89.99676 * 3 2 1 14 14 O 1.21273 * 120.00182 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00009 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47197 * 179.97438 * 15 13 3 17 17 C 1.47623 * 110.99902 * 266.16213 * 16 15 13 18 18 C 1.52745 * 87.73772 * 221.88089 * 17 16 15 19 19 C 1.47626 * 111.00130 * 170.00441 * 16 15 13 20 20 C 1.53666 * 115.20270 * 140.80145 * 18 17 16 21 21 C 1.55488 * 101.97604 * 111.17982 * 20 18 17 22 22 H 1.08997 * 111.10444 * 151.44188 * 21 20 18 23 23 N 1.46500 * 111.13973 * 275.53523 * 21 20 18 24 24 C 1.34776 * 120.00009 * 198.13015 * 23 21 20 25 25 C 1.50698 * 120.00148 * 180.02562 * 24 23 21 26 26 O 1.21284 * 119.99525 * 0.02562 * 24 23 21 27 27 C 1.55008 * 101.04253 * 33.49589 * 21 20 18 28 28 O 1.42411 * 116.07066 * 269.18832 * 18 17 16 29 29 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 33 33 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 34 34 H 1.09007 * 109.47237 * 209.99803 * 4 3 2 35 35 H 1.08995 * 109.47637 * 329.99646 * 4 3 2 36 36 H 0.96996 * 120.00006 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47328 * 300.00634 * 15 13 3 38 38 H 1.09009 * 109.47181 * 59.99924 * 15 13 3 39 39 H 1.08995 * 113.51042 * 336.59447 * 17 16 15 40 40 H 1.09004 * 113.50480 * 107.16647 * 17 16 15 41 41 H 1.09005 * 113.50367 * 252.84321 * 19 16 15 42 42 H 1.08996 * 113.50585 * 23.33388 * 19 16 15 43 43 H 1.08999 * 110.93037 * 229.35060 * 20 18 17 44 44 H 1.09003 * 110.93031 * 353.00835 * 20 18 17 45 45 H 0.97002 * 120.00188 * 18.13889 * 23 21 20 46 46 H 1.09001 * 109.47362 * 90.00058 * 25 24 23 47 47 H 1.08998 * 109.46983 * 210.00483 * 25 24 23 48 48 H 1.09001 * 109.46973 * 329.99850 * 25 24 23 49 49 H 1.08996 * 110.30242 * 205.04062 * 27 21 20 50 50 H 1.09004 * 110.38821 * 82.93394 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0067 2.7822 -1.7037 6 1 0.1156 2.7247 -1.0962 7 6 0.9950 3.5048 -2.8780 8 7 -0.1011 4.1243 -3.2580 9 14 2.5358 3.6037 -3.9293 10 1 2.5403 2.4863 -4.9075 11 1 2.5568 4.8983 -4.6564 12 1 3.7355 3.5049 -3.0596 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9923 1.3061 2.4723 16 7 2.3109 2.2059 3.5889 17 6 3.6987 2.0054 4.0504 18 6 3.1743 2.1126 5.4810 19 6 1.8565 1.6370 4.8731 20 6 3.8177 1.1463 6.4878 21 6 4.6312 2.1159 7.3909 22 1 4.7352 1.7179 8.4003 23 7 5.9417 2.4091 6.8054 24 6 6.9254 2.9159 7.5747 25 6 8.2733 3.2180 6.9723 26 8 6.7258 3.1289 8.7519 27 6 3.7202 3.3699 7.3764 28 8 3.1672 3.4186 6.0488 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.0645 2.7985 -1.1384 35 1 2.5506 1.3452 -2.0283 36 1 -0.1093 4.6329 -4.0838 37 1 0.9444 1.0114 2.5302 38 1 2.6228 0.4187 2.5299 39 1 4.1000 1.0217 3.8070 40 1 4.3710 2.8170 3.7718 41 1 0.9812 2.1390 5.2855 42 1 1.7512 0.5523 4.8550 43 1 3.0564 0.6224 7.0657 44 1 4.4763 0.4395 5.9830 45 1 6.1015 2.2385 5.8639 46 1 8.2842 4.2430 6.6015 47 1 9.0458 3.0982 7.7318 48 1 8.4649 2.5313 6.1478 49 1 4.3076 4.2665 7.5745 50 1 2.9241 3.2695 8.1142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001447397950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:32 Heat of formation + Delta-G solvation = -93.571415 kcal Electronic energy + Delta-G solvation = -30371.438199 eV Core-core repulsion = 26206.303946 eV Total energy + Delta-G solvation = -4165.134252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24366 -40.82177 -40.23718 -38.49099 -36.89668 -35.51423 -34.80342 -32.62451 -32.09169 -31.46490 -30.02980 -29.43811 -27.75274 -27.06039 -24.94450 -24.14104 -23.51144 -22.61668 -21.64111 -20.54523 -19.89063 -19.07543 -18.09215 -17.97237 -17.89793 -17.43704 -16.94035 -16.75279 -16.36599 -16.13913 -16.11516 -15.72949 -15.32829 -15.03547 -14.77754 -14.62131 -14.52413 -14.31854 -14.06392 -13.85000 -13.68023 -13.50841 -13.49622 -13.25508 -13.07037 -13.01770 -12.77923 -12.68211 -12.52461 -12.46014 -12.27591 -12.02325 -12.01378 -11.81941 -11.74179 -11.60468 -10.98431 -10.79715 -10.64127 -10.58053 -10.06153 -9.66717 -9.37234 -8.31500 -6.35095 1.30431 1.36087 1.46379 1.58532 1.86400 2.20735 2.27337 2.32371 2.58806 3.02254 3.17023 3.30629 3.45569 3.50969 3.72977 3.87906 3.95048 4.05267 4.13517 4.23769 4.32924 4.38434 4.42884 4.47782 4.49254 4.59809 4.63041 4.64028 4.65903 4.68185 4.75002 4.78326 4.85127 4.88084 4.91502 4.96315 4.97727 5.04775 5.10164 5.39048 5.45467 5.48751 5.53594 5.71522 5.95931 6.17096 6.29110 6.50489 6.66710 6.79669 7.19824 7.25463 7.54369 8.85619 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016369 B = 0.002432 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.166256 B =11508.043407 C =12308.576409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.605 5.605 4 C 0.225 3.775 5 C -0.526 4.526 6 H 0.029 0.971 7 C 0.006 3.994 8 N -0.949 5.949 9 Si 0.948 3.052 10 H -0.250 1.250 11 H -0.285 1.285 12 H -0.256 1.256 13 C 0.497 3.503 14 O -0.583 6.583 15 C 0.015 3.985 16 N -0.490 5.490 17 C -0.003 4.003 18 C 0.085 3.915 19 C -0.002 4.002 20 C -0.126 4.126 21 C 0.112 3.888 22 H 0.111 0.889 23 N -0.711 5.711 24 C 0.508 3.492 25 C -0.169 4.169 26 O -0.596 6.596 27 C 0.034 3.966 28 O -0.370 6.370 29 H 0.094 0.906 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.015 0.985 35 H 0.048 0.952 36 H 0.266 0.734 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.414 0.586 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.107 0.893 49 H 0.069 0.931 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.481 -16.843 21.325 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.016 4.016 3 N -0.337 5.337 4 C 0.102 3.898 5 C -0.565 4.565 6 H 0.048 0.952 7 C -0.192 4.192 8 N -0.590 5.590 9 Si 0.771 3.229 10 H -0.174 1.174 11 H -0.211 1.211 12 H -0.180 1.180 13 C 0.286 3.714 14 O -0.462 6.462 15 C -0.116 4.116 16 N -0.213 5.213 17 C -0.132 4.132 18 C 0.044 3.956 19 C -0.130 4.130 20 C -0.164 4.164 21 C 0.006 3.994 22 H 0.129 0.871 23 N -0.363 5.363 24 C 0.297 3.703 25 C -0.229 4.229 26 O -0.477 6.477 27 C -0.043 4.043 28 O -0.289 6.289 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.105 0.895 34 H 0.033 0.967 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.250 0.750 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.125 0.875 49 H 0.087 0.913 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.156 -15.178 21.634 29.521 hybrid contribution 0.073 0.298 -1.208 1.247 sum 13.229 -14.879 20.426 28.524 Atomic orbital electron populations 1.22172 0.96557 1.02606 1.01064 1.21793 0.94349 0.80777 1.04657 1.48124 1.64724 1.15200 1.05677 1.19287 0.94987 0.92751 0.82774 1.21589 0.97564 1.31012 1.06318 0.95238 1.25891 0.99668 0.94404 0.99200 1.70062 1.29915 1.34536 1.24454 0.85705 0.79699 0.78506 0.78991 1.17380 1.21128 1.18024 1.21273 0.77248 0.86501 0.86390 1.90644 1.47616 1.20095 1.87855 1.22663 1.04692 0.95174 0.89029 1.68847 1.08060 1.42687 1.01664 1.24438 0.92514 1.02589 0.93630 1.22607 0.96248 0.83839 0.92882 1.24357 0.98661 1.01133 0.88850 1.23299 1.00190 0.96774 0.96172 1.22562 0.82828 0.94546 0.99476 0.87118 1.46024 1.11385 1.65012 1.13916 1.21494 0.87644 0.75133 0.86046 1.21922 0.91970 1.05267 1.03700 1.90705 1.84088 1.54327 1.18551 1.24015 0.96480 0.99268 0.84552 1.88467 1.83002 1.27897 1.29508 0.88716 0.95266 0.93718 0.86886 0.89533 0.96731 0.93397 0.92474 0.87058 0.86837 0.86728 0.91900 0.90229 0.86104 0.85748 0.86204 0.74953 0.88091 0.88599 0.87471 0.91290 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.73 10.24 71.98 0.74 -4.00 16 2 C 0.11 2.81 5.98 86.38 0.52 3.32 16 3 N -0.60 -23.83 2.46 -826.18 -2.03 -25.86 16 4 C 0.22 10.98 4.27 85.63 0.37 11.34 16 5 C -0.53 -31.33 9.48 25.60 0.24 -31.09 16 6 H 0.03 1.97 7.67 -2.91 -0.02 1.95 16 7 C 0.01 0.33 5.47 84.66 0.46 0.80 16 8 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 9 Si 0.95 45.18 27.47 68.60 1.88 47.06 16 10 H -0.25 -10.78 7.11 99.48 0.71 -10.07 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 12 H -0.26 -11.77 6.54 99.48 0.65 -11.12 16 13 C 0.50 20.05 7.74 87.66 0.68 20.73 16 14 O -0.58 -30.71 16.01 -3.01 -0.05 -30.76 16 15 C 0.02 0.40 3.85 85.56 0.33 0.73 16 16 N -0.49 -13.55 5.82 -933.41 -5.43 -18.98 16 17 C 0.00 -0.06 7.20 83.75 0.60 0.54 16 18 C 0.08 1.44 1.73 -10.75 -0.02 1.42 16 19 C 0.00 -0.03 7.21 83.74 0.60 0.57 16 20 C -0.13 -0.98 5.97 31.67 0.19 -0.79 16 21 C 0.11 1.43 3.37 46.53 0.16 1.59 16 22 H 0.11 1.44 7.74 -2.39 -0.02 1.42 16 23 N -0.71 -8.94 5.24 -435.26 -2.28 -11.22 16 24 C 0.51 8.32 7.94 87.66 0.70 9.02 16 25 C -0.17 -1.50 10.30 71.24 0.73 -0.76 16 26 O -0.60 -15.18 16.85 -3.04 -0.05 -15.23 16 27 C 0.03 0.64 7.49 72.67 0.54 1.18 16 28 O -0.37 -9.13 11.17 -148.98 -1.66 -10.79 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.03 1.12 7.26 -2.39 -0.02 1.10 16 31 H 0.04 1.29 7.22 -2.38 -0.02 1.27 16 32 H 0.11 1.84 6.44 -2.39 -0.02 1.83 16 33 H 0.09 2.10 7.89 -2.39 -0.02 2.08 16 34 H 0.01 0.79 6.48 -2.38 -0.02 0.77 16 35 H 0.05 2.10 7.32 -2.39 -0.02 2.08 16 36 H 0.27 16.02 8.31 -92.71 -0.77 15.24 16 37 H 0.11 2.58 7.13 -2.39 -0.02 2.56 16 38 H 0.11 1.77 6.56 -2.38 -0.02 1.76 16 39 H 0.12 1.38 7.22 -2.39 -0.02 1.36 16 40 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.12 1.09 7.89 -2.39 -0.02 1.07 16 43 H 0.12 0.45 8.12 -2.39 -0.02 0.43 16 44 H 0.12 0.36 7.81 -2.39 -0.02 0.34 16 45 H 0.41 3.63 8.62 -92.71 -0.80 2.83 16 46 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -95.78 402.79 -2.39 -98.17 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.09 Total: 14.01 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 6.84 Total: 14.60 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -9.44 Total: -117.06 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -1.76 Total: -56.79 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -95.78 -2.39 -98.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447397950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.603 kcal (2) G-P(sol) polarization free energy of solvation -95.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds