Wall clock time and date at job start Sat Apr 11 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47063 * 2 1 4 4 C 1.46896 * 111.00025 * 59.18888 * 3 2 1 5 5 C 1.53000 * 109.47051 * 66.04493 * 4 3 2 6 6 C 1.53004 * 109.46953 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.47045 * 180.02562 * 6 5 4 8 8 C 1.34771 * 120.00106 * 179.97438 * 7 6 5 9 9 O 1.21740 * 119.99829 * 359.97438 * 8 7 6 10 10 C 1.41803 * 120.00197 * 179.97438 * 8 7 6 11 11 C 1.33456 * 118.78734 * 179.97438 * 10 8 7 12 12 O 1.34347 * 123.08031 * 180.41055 * 11 10 8 13 13 C 1.45352 * 117.48001 * 343.68045 * 12 11 10 14 14 C 1.53485 * 108.30213 * 47.45093 * 13 12 11 15 15 C 1.50413 * 118.78549 * 359.97438 * 10 8 7 16 16 C 1.46897 * 111.00088 * 295.23279 * 3 2 1 17 17 C 1.50698 * 109.47226 * 288.23906 * 16 3 2 18 18 O 1.21288 * 120.00243 * 354.29939 * 17 16 3 19 19 N 1.34783 * 119.99790 * 174.30077 * 17 16 3 20 20 C 1.37098 * 119.99726 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00340 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99949 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99975 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99925 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47161 * 89.99979 * 24 22 20 26 26 H 1.48502 * 109.46563 * 210.00224 * 24 22 20 27 27 H 1.48499 * 109.46861 * 329.99709 * 24 22 20 28 28 H 1.08998 * 109.46962 * 299.99319 * 1 2 3 29 29 H 1.08997 * 109.46945 * 59.99136 * 1 2 3 30 30 H 1.08998 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47560 * 240.00235 * 2 1 3 32 32 H 1.09001 * 109.47585 * 119.99848 * 2 1 3 33 33 H 1.09000 * 109.47313 * 306.04826 * 4 3 2 34 34 H 1.08995 * 109.47393 * 186.04408 * 4 3 2 35 35 H 1.09002 * 109.47280 * 60.00137 * 5 4 3 36 36 H 1.08996 * 109.47466 * 300.00106 * 5 4 3 37 37 H 1.08992 * 109.47270 * 60.00351 * 6 5 4 38 38 H 1.09004 * 109.47213 * 299.99627 * 6 5 4 39 39 H 0.97002 * 119.99901 * 359.97438 * 7 6 5 40 40 H 1.07999 * 118.46090 * 0.44082 * 11 10 8 41 41 H 1.08999 * 109.70669 * 167.16811 * 13 12 11 42 42 H 1.09000 * 109.70330 * 287.73613 * 13 12 11 43 43 H 1.08997 * 109.70513 * 57.01334 * 14 13 12 44 44 H 1.08997 * 109.70649 * 177.63073 * 14 13 12 45 45 H 1.09003 * 109.45732 * 282.35720 * 15 10 8 46 46 H 1.09004 * 109.45583 * 42.31990 * 15 10 8 47 47 H 1.09003 * 109.47256 * 48.23624 * 16 3 2 48 48 H 1.08999 * 109.47362 * 168.23792 * 16 3 2 49 49 H 0.96994 * 119.99991 * 0.02562 * 19 17 16 50 50 H 0.96995 * 119.99759 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5328 2.1155 1.1778 5 6 2.1477 1.5120 2.4422 6 6 1.6401 2.2725 3.6691 7 7 2.2293 1.6950 4.8797 8 6 1.9241 2.2077 6.0882 9 8 1.1592 3.1509 6.1737 10 6 2.4940 1.6484 7.2601 11 6 2.1754 2.1753 8.4441 12 8 2.6704 1.7192 9.6068 13 6 3.2891 0.4039 9.6024 14 6 4.2520 0.3282 8.4096 15 6 3.4352 0.4832 7.1228 16 6 1.6439 2.0762 -1.2405 17 6 2.4639 1.5370 -2.3842 18 8 3.3514 0.7384 -2.1705 19 7 2.2109 1.9421 -3.6445 20 6 2.9565 1.4512 -4.6850 21 1 3.7468 0.7400 -4.4947 22 6 2.6954 1.8684 -5.9844 23 7 1.7342 2.7340 -6.2160 24 14 3.7118 1.1999 -7.4021 25 1 3.0718 -0.0302 -7.9331 26 1 3.7919 2.2204 -8.4780 27 1 5.0798 0.8785 -6.9219 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.4468 2.0388 1.2297 34 1 1.8197 3.1641 1.0992 35 1 3.2338 1.5887 2.3904 36 1 1.8609 0.4634 2.5209 37 1 0.5542 2.1953 3.7207 38 1 1.9267 3.3212 3.5907 39 1 2.8391 0.9437 4.8115 40 1 1.4871 3.0072 8.4689 41 1 3.8409 0.2542 10.5304 42 1 2.5209 -0.3632 9.5040 43 1 4.9854 1.1315 8.4778 44 1 4.7608 -0.6357 8.4087 45 1 2.8625 -0.4271 6.9451 46 1 4.1091 0.6577 6.2840 47 1 0.5856 1.9107 -1.4425 48 1 1.8303 3.1447 -1.1320 49 1 1.5014 2.5811 -3.8154 50 1 1.5522 3.0255 -7.1230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479839714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:40 Heat of formation + Delta-G solvation = -96.240825 kcal Electronic energy + Delta-G solvation = -28789.154419 eV Core-core repulsion = 24623.904413 eV Total energy + Delta-G solvation = -4165.250006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.00995 -39.47078 -38.87956 -37.17399 -35.40080 -34.67507 -33.82138 -32.24400 -31.52275 -31.21011 -30.02482 -27.30218 -26.27930 -25.47649 -24.27039 -24.11248 -22.43053 -21.58344 -20.18582 -19.17468 -18.89901 -18.28140 -17.76946 -16.94555 -16.35317 -16.17043 -16.06196 -15.69463 -15.59982 -15.14328 -15.02136 -14.61007 -14.48670 -14.28209 -13.86091 -13.76598 -13.59592 -13.43003 -13.20601 -13.08513 -12.98387 -12.19056 -12.09467 -11.91629 -11.83167 -11.76999 -11.53573 -11.47818 -11.43314 -11.19373 -11.15202 -11.05447 -10.80808 -10.37824 -10.31798 -10.19020 -10.08689 -9.45006 -9.30184 -8.88745 -8.42243 -7.93150 -7.79613 -6.38749 -3.79378 1.03059 2.68643 3.10686 3.14346 3.19316 3.27682 3.33672 3.95704 4.00429 4.09027 4.16406 4.26405 4.32929 4.61395 4.69519 4.82458 4.84881 4.89780 5.03515 5.07109 5.10413 5.12327 5.26740 5.29309 5.32088 5.40760 5.49388 5.51646 5.55994 5.56741 5.62388 5.68181 5.75137 5.77547 5.91585 6.01535 6.05303 6.16391 6.27932 6.29664 6.35168 6.54345 6.73291 7.30191 7.33715 7.41979 7.57772 8.06619 8.09931 8.65957 9.21731 9.58774 10.11202 10.79150 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028246 B = 0.001573 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.039801 B =17794.438722 C =18121.737138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.050 3.950 3 N -0.511 5.511 4 C 0.054 3.946 5 C -0.127 4.127 6 C 0.121 3.879 7 N -0.727 5.727 8 C 0.571 3.429 9 O -0.562 6.562 10 C -0.319 4.319 11 C 0.160 3.840 12 O -0.311 6.311 13 C 0.052 3.948 14 C -0.157 4.157 15 C -0.075 4.075 16 C 0.041 3.959 17 C 0.446 3.554 18 O -0.576 6.576 19 N -0.567 5.567 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.400 0.600 40 H 0.180 0.820 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.053 0.947 48 H 0.087 0.913 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.697 -4.296 29.043 29.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.078 4.078 3 N -0.234 5.234 4 C -0.075 4.075 5 C -0.165 4.165 6 C -0.003 4.003 7 N -0.379 5.379 8 C 0.362 3.638 9 O -0.444 6.444 10 C -0.324 4.324 11 C 0.092 3.908 12 O -0.221 6.221 13 C -0.022 4.022 14 C -0.195 4.195 15 C -0.112 4.112 16 C -0.090 4.090 17 C 0.231 3.769 18 O -0.460 6.460 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.195 1.195 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.235 0.765 40 H 0.197 0.803 41 H 0.127 0.873 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.070 0.930 48 H 0.105 0.895 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.155 -4.021 29.263 29.539 hybrid contribution -0.566 -0.375 -1.305 1.472 sum -0.721 -4.397 27.958 28.311 Atomic orbital electron populations 1.22466 0.99084 1.02118 1.01715 1.22207 0.91773 0.90218 1.03600 1.61762 1.59188 1.01983 1.00448 1.22036 0.97410 0.98248 0.89813 1.21763 1.02215 0.99925 0.92579 1.21310 0.98125 0.97896 0.82971 1.45918 1.49333 1.36521 1.06144 1.16567 0.80973 0.82786 0.83476 1.90816 1.37360 1.28868 1.87307 1.20039 1.10790 1.07435 0.94107 1.23004 0.89663 0.94489 0.83604 1.86286 1.70396 1.34795 1.30652 1.23580 0.96130 0.82210 1.00314 1.22191 0.98481 1.04119 0.94693 1.20276 0.96531 0.96005 0.98367 1.21920 0.97926 0.98886 0.90279 1.19771 0.87395 0.86224 0.83518 1.90505 1.34353 1.37151 1.83989 1.41878 1.32970 1.40691 1.04911 1.19689 1.14454 1.23699 0.84897 0.87978 1.25245 0.97253 0.96752 0.98733 1.69612 1.30733 1.32005 1.22091 0.85872 0.80026 0.78259 0.80209 1.20490 1.20966 1.19455 0.92750 0.92314 0.92310 0.89125 0.91204 0.94263 0.90678 0.90255 0.91224 0.91611 0.91325 0.76505 0.80290 0.87254 0.90734 0.90214 0.89329 0.90644 0.90114 0.92960 0.89518 0.77568 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.52 9.27 37.16 0.34 -2.17 16 2 C 0.05 0.76 5.52 -3.82 -0.02 0.74 16 3 N -0.51 -8.16 4.31 -236.08 -1.02 -9.18 16 4 C 0.05 0.65 4.69 -3.83 -0.02 0.63 16 5 C -0.13 -1.28 5.25 -26.73 -0.14 -1.42 16 6 C 0.12 1.21 5.67 -4.04 -0.02 1.19 16 7 N -0.73 -6.72 5.47 -63.17 -0.35 -7.07 16 8 C 0.57 6.28 7.53 -14.90 -0.11 6.17 16 9 O -0.56 -8.20 15.92 5.15 0.08 -8.11 16 10 C -0.32 -2.66 5.70 -105.07 -0.60 -3.26 16 11 C 0.16 1.30 10.47 29.06 0.30 1.60 16 12 O -0.31 -2.24 10.48 -14.88 -0.16 -2.39 16 13 C 0.05 0.22 7.15 37.41 0.27 0.48 16 14 C -0.16 -0.64 6.23 -26.37 -0.16 -0.81 16 15 C -0.07 -0.41 5.08 -27.92 -0.14 -0.55 16 16 C 0.04 0.73 5.34 -4.98 -0.03 0.70 16 17 C 0.45 10.49 7.36 -10.98 -0.08 10.41 16 18 O -0.58 -15.52 14.70 5.55 0.08 -15.44 16 19 N -0.57 -14.40 5.29 -10.96 -0.06 -14.46 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 24 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.05 0.62 6.26 -51.93 -0.33 0.30 16 29 H 0.06 0.82 6.29 -51.93 -0.33 0.50 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.70 6.54 -51.93 -0.34 1.36 16 32 H 0.07 0.93 6.51 -51.93 -0.34 0.59 16 33 H 0.04 0.45 5.98 -51.93 -0.31 0.14 16 34 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.68 6.57 -51.93 -0.34 0.33 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.40 2.80 6.58 -40.82 -0.27 2.53 16 40 H 0.18 1.47 7.21 -52.49 -0.38 1.09 16 41 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.41 7.15 -51.93 -0.37 0.04 16 47 H 0.05 0.86 5.97 -51.93 -0.31 0.55 16 48 H 0.09 1.41 7.81 -51.93 -0.41 1.00 16 49 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -34.12 397.90 -8.13 -42.25 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -7.76 Total: 10.50 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.65 Total: 5.73 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.70 Total: -54.63 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: 0.01 Total: -25.95 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.12 -8.13 -42.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479839714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.991 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds