Wall clock time and date at job start Sat Apr 11 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47063 * 2 1 4 4 C 1.46896 * 111.00025 * 59.18888 * 3 2 1 5 5 C 1.53000 * 109.47051 * 66.04493 * 4 3 2 6 6 C 1.53004 * 109.46953 * 180.02562 * 5 4 3 7 7 N 1.46503 * 109.47045 * 180.02562 * 6 5 4 8 8 C 1.34771 * 120.00106 * 179.97438 * 7 6 5 9 9 O 1.21740 * 119.99829 * 359.97438 * 8 7 6 10 10 C 1.41803 * 120.00197 * 179.97438 * 8 7 6 11 11 C 1.33456 * 118.78734 * 179.97438 * 10 8 7 12 12 O 1.34347 * 123.08031 * 180.41055 * 11 10 8 13 13 C 1.45352 * 117.48001 * 343.68045 * 12 11 10 14 14 C 1.53485 * 108.30213 * 47.45093 * 13 12 11 15 15 C 1.50413 * 118.78549 * 359.97438 * 10 8 7 16 16 C 1.46897 * 111.00088 * 295.23279 * 3 2 1 17 17 C 1.50698 * 109.47226 * 288.23906 * 16 3 2 18 18 O 1.21288 * 120.00243 * 354.29939 * 17 16 3 19 19 N 1.34783 * 119.99790 * 174.30077 * 17 16 3 20 20 C 1.37098 * 119.99726 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00340 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99949 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99975 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99925 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47161 * 89.99979 * 24 22 20 26 26 H 1.48502 * 109.46563 * 210.00224 * 24 22 20 27 27 H 1.48499 * 109.46861 * 329.99709 * 24 22 20 28 28 H 1.08998 * 109.46962 * 299.99319 * 1 2 3 29 29 H 1.08997 * 109.46945 * 59.99136 * 1 2 3 30 30 H 1.08998 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47560 * 240.00235 * 2 1 3 32 32 H 1.09001 * 109.47585 * 119.99848 * 2 1 3 33 33 H 1.09000 * 109.47313 * 306.04826 * 4 3 2 34 34 H 1.08995 * 109.47393 * 186.04408 * 4 3 2 35 35 H 1.09002 * 109.47280 * 60.00137 * 5 4 3 36 36 H 1.08996 * 109.47466 * 300.00106 * 5 4 3 37 37 H 1.08992 * 109.47270 * 60.00351 * 6 5 4 38 38 H 1.09004 * 109.47213 * 299.99627 * 6 5 4 39 39 H 0.97002 * 119.99901 * 359.97438 * 7 6 5 40 40 H 1.07999 * 118.46090 * 0.44082 * 11 10 8 41 41 H 1.08999 * 109.70669 * 167.16811 * 13 12 11 42 42 H 1.09000 * 109.70330 * 287.73613 * 13 12 11 43 43 H 1.08997 * 109.70513 * 57.01334 * 14 13 12 44 44 H 1.08997 * 109.70649 * 177.63073 * 14 13 12 45 45 H 1.09003 * 109.45732 * 282.35720 * 15 10 8 46 46 H 1.09004 * 109.45583 * 42.31990 * 15 10 8 47 47 H 1.09003 * 109.47256 * 48.23624 * 16 3 2 48 48 H 1.08999 * 109.47362 * 168.23792 * 16 3 2 49 49 H 0.96994 * 119.99991 * 0.02562 * 19 17 16 50 50 H 0.96995 * 119.99759 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5328 2.1155 1.1778 5 6 2.1477 1.5120 2.4422 6 6 1.6401 2.2725 3.6691 7 7 2.2293 1.6950 4.8797 8 6 1.9241 2.2077 6.0882 9 8 1.1592 3.1509 6.1737 10 6 2.4940 1.6484 7.2601 11 6 2.1754 2.1753 8.4441 12 8 2.6704 1.7192 9.6068 13 6 3.2891 0.4039 9.6024 14 6 4.2520 0.3282 8.4096 15 6 3.4352 0.4832 7.1228 16 6 1.6439 2.0762 -1.2405 17 6 2.4639 1.5370 -2.3842 18 8 3.3514 0.7384 -2.1705 19 7 2.2109 1.9421 -3.6445 20 6 2.9565 1.4512 -4.6850 21 1 3.7468 0.7400 -4.4947 22 6 2.6954 1.8684 -5.9844 23 7 1.7342 2.7340 -6.2160 24 14 3.7118 1.1999 -7.4021 25 1 3.0718 -0.0302 -7.9331 26 1 3.7919 2.2204 -8.4780 27 1 5.0798 0.8785 -6.9219 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.4468 2.0388 1.2297 34 1 1.8197 3.1641 1.0992 35 1 3.2338 1.5887 2.3904 36 1 1.8609 0.4634 2.5209 37 1 0.5542 2.1953 3.7207 38 1 1.9267 3.3212 3.5907 39 1 2.8391 0.9437 4.8115 40 1 1.4871 3.0072 8.4689 41 1 3.8409 0.2542 10.5304 42 1 2.5209 -0.3632 9.5040 43 1 4.9854 1.1315 8.4778 44 1 4.7608 -0.6357 8.4087 45 1 2.8625 -0.4271 6.9451 46 1 4.1091 0.6577 6.2840 47 1 0.5856 1.9107 -1.4425 48 1 1.8303 3.1447 -1.1320 49 1 1.5014 2.5811 -3.8154 50 1 1.5522 3.0255 -7.1230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479839714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:39 Heat of formation + Delta-G solvation = -122.024857 kcal Electronic energy + Delta-G solvation = -28790.272499 eV Core-core repulsion = 24623.904413 eV Total energy + Delta-G solvation = -4166.368086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.64018 -40.52294 -40.10890 -38.66397 -36.35827 -35.83153 -35.19460 -33.25741 -32.89269 -32.28026 -31.28782 -28.62686 -26.82667 -26.64001 -25.81692 -24.86273 -23.38817 -22.29236 -21.41228 -20.59635 -19.78565 -19.74232 -18.88080 -17.79287 -17.56084 -17.25468 -16.89185 -16.81456 -16.49640 -16.44670 -16.08624 -15.83807 -15.67419 -15.13232 -15.08867 -14.85827 -14.66801 -14.41534 -14.32703 -13.97809 -13.64051 -13.62358 -13.42958 -13.14548 -13.00593 -12.92128 -12.70863 -12.68885 -12.39749 -12.29740 -12.16366 -12.11323 -11.94321 -11.79575 -11.61772 -11.50596 -11.32480 -10.94532 -10.27890 -10.13662 -9.97635 -9.47933 -9.08854 -8.44390 -5.92891 0.36405 1.38702 1.41942 1.54783 2.09721 2.14353 2.28686 2.33752 2.44693 2.85714 3.22526 3.46996 3.72036 3.75634 3.94388 3.96381 4.00309 4.15029 4.20375 4.23041 4.29212 4.30944 4.34458 4.42819 4.48783 4.55432 4.58790 4.60464 4.62155 4.69375 4.74543 4.77691 4.94420 5.02207 5.08544 5.10084 5.18809 5.20877 5.22551 5.24143 5.40140 5.42975 5.50041 5.92816 6.13014 6.20071 6.27843 6.60983 6.63928 7.15920 7.27756 7.60312 8.16642 8.73087 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028246 B = 0.001573 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.039801 B =17794.438722 C =18121.737138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.052 3.948 3 N -0.530 5.530 4 C 0.054 3.946 5 C -0.112 4.112 6 C 0.128 3.872 7 N -0.718 5.718 8 C 0.565 3.435 9 O -0.606 6.606 10 C -0.328 4.328 11 C 0.164 3.836 12 O -0.321 6.321 13 C 0.044 3.956 14 C -0.153 4.153 15 C -0.075 4.075 16 C 0.053 3.947 17 C 0.444 3.556 18 O -0.614 6.614 19 N -0.578 5.578 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.412 0.588 40 H 0.170 0.830 41 H 0.131 0.869 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.105 0.895 49 H 0.395 0.605 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 -5.163 30.187 30.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.076 4.076 3 N -0.253 5.253 4 C -0.074 4.074 5 C -0.150 4.150 6 C 0.004 3.996 7 N -0.370 5.370 8 C 0.358 3.642 9 O -0.491 6.491 10 C -0.333 4.333 11 C 0.096 3.904 12 O -0.231 6.231 13 C -0.029 4.029 14 C -0.191 4.191 15 C -0.112 4.112 16 C -0.078 4.078 17 C 0.231 3.769 18 O -0.500 6.500 19 N -0.216 5.216 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.250 0.750 40 H 0.187 0.813 41 H 0.149 0.851 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.130 0.870 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.088 0.912 48 H 0.123 0.877 49 H 0.228 0.772 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.121 -4.906 30.420 30.813 hybrid contribution -0.560 -0.127 -1.559 1.662 sum -0.681 -5.033 28.861 29.304 Atomic orbital electron populations 1.22377 0.97122 1.03033 1.01961 1.22126 0.93354 0.89690 1.02430 1.61702 1.60329 1.02540 1.00743 1.22112 0.98334 0.98139 0.88804 1.21604 1.01663 1.00233 0.91523 1.21168 0.97942 0.97383 0.83149 1.45825 1.49098 1.36564 1.05508 1.16982 0.80449 0.82261 0.84493 1.90790 1.39473 1.30897 1.87922 1.20091 1.11627 1.08594 0.92982 1.22930 0.89275 0.94177 0.84050 1.86274 1.70338 1.36393 1.30137 1.23902 0.96568 0.80891 1.01553 1.22197 0.98070 1.05095 0.93714 1.20350 0.96290 0.95124 0.99426 1.21772 0.97499 0.99572 0.88963 1.20818 0.86958 0.84914 0.84214 1.90473 1.36147 1.38653 1.84698 1.41954 1.33121 1.41142 1.05340 1.19654 1.15224 1.24729 0.86508 0.90360 1.26019 0.98125 0.96674 1.00516 1.69675 1.31363 1.32303 1.22960 0.84938 0.78210 0.78067 0.77178 1.19660 1.19626 1.19818 0.90653 0.93720 0.91167 0.93480 0.89184 0.92854 0.90303 0.90777 0.90248 0.91890 0.92327 0.75044 0.81276 0.85071 0.89742 0.90995 0.86993 0.89512 0.89691 0.91216 0.87658 0.77174 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.44 9.27 71.98 0.67 -3.78 16 2 C 0.05 1.52 5.52 86.30 0.48 2.00 16 3 N -0.53 -16.30 4.31 -900.82 -3.88 -20.18 16 4 C 0.05 1.20 4.69 86.30 0.41 1.60 16 5 C -0.11 -2.04 5.25 30.60 0.16 -1.88 16 6 C 0.13 2.38 5.67 86.38 0.49 2.87 16 7 N -0.72 -12.35 5.47 -471.98 -2.58 -14.93 16 8 C 0.57 12.20 7.53 85.12 0.64 12.84 16 9 O -0.61 -17.95 15.92 -4.48 -0.07 -18.02 16 10 C -0.33 -5.22 5.70 -20.16 -0.11 -5.33 16 11 C 0.16 2.62 10.47 66.74 0.70 3.32 16 12 O -0.32 -4.28 10.48 -76.16 -0.80 -5.08 16 13 C 0.04 0.27 7.15 72.14 0.52 0.79 16 14 C -0.15 -0.88 6.23 30.83 0.19 -0.69 16 15 C -0.07 -0.67 5.08 29.83 0.15 -0.52 16 16 C 0.05 1.84 5.34 85.56 0.46 2.30 16 17 C 0.44 21.27 7.36 87.66 0.65 21.91 16 18 O -0.61 -34.08 14.70 -3.06 -0.04 -34.12 16 19 N -0.58 -29.97 5.29 -306.98 -1.62 -31.60 16 20 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 23 N -0.92 -50.19 13.05 21.66 0.28 -49.91 16 24 Si 0.99 43.28 29.55 68.60 2.03 45.30 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 H 0.07 1.48 6.26 -2.39 -0.01 1.47 16 29 H 0.04 1.19 6.29 -2.39 -0.02 1.17 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.80 6.54 -2.39 -0.02 1.79 16 32 H 0.09 2.23 6.51 -2.39 -0.02 2.22 16 33 H 0.05 1.06 5.98 -2.39 -0.01 1.05 16 34 H 0.08 1.71 7.86 -2.39 -0.02 1.69 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.31 6.57 -2.39 -0.02 1.30 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.41 4.98 6.58 -92.71 -0.61 4.37 16 40 H 0.17 2.92 7.21 -2.91 -0.02 2.90 16 41 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.08 0.68 7.15 -2.38 -0.02 0.66 16 47 H 0.07 2.20 5.97 -2.39 -0.01 2.18 16 48 H 0.11 3.27 7.81 -2.39 -0.02 3.25 16 49 H 0.39 19.53 7.90 -92.71 -0.73 18.79 16 50 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -75.62 397.90 -0.39 -76.01 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -0.37 Total: 35.55 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 6.67 Total: 16.97 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -7.80 Total: -116.62 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -0.91 Total: -57.22 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -75.62 -0.39 -76.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479839714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.014 kcal (2) G-P(sol) polarization free energy of solvation -75.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds