Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 O 1.42906 * 109.46752 * 239.99582 * 2 1 3 5 5 C 1.42899 * 113.99771 * 90.00267 * 4 2 1 6 6 C 1.52996 * 109.46966 * 179.97438 * 5 4 2 7 7 C 1.52999 * 117.50005 * 243.61897 * 6 5 4 8 8 C 1.53006 * 60.00205 * 252.51223 * 7 6 5 9 9 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 10 10 O 1.21279 * 120.00449 * 114.99935 * 9 2 1 11 11 N 1.34776 * 119.99626 * 294.99517 * 9 2 1 12 12 C 1.46498 * 120.00551 * 0.02562 * 11 9 2 13 13 C 1.46508 * 120.00166 * 179.97438 * 11 9 2 14 14 C 1.53932 * 113.73581 * 218.76923 * 13 11 9 15 15 N 1.48192 * 86.09899 * 221.95877 * 14 13 11 16 16 C 1.46898 * 111.07288 * 137.52301 * 15 14 13 17 17 C 1.50700 * 109.47183 * 70.56340 * 16 15 14 18 18 O 1.21296 * 119.99962 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00372 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00301 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00169 * 359.97438 * 20 19 17 22 22 C 1.38959 * 120.00117 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99802 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00170 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47076 * 59.99719 * 24 22 20 26 26 H 1.48493 * 109.47050 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46765 * 299.99928 * 24 22 20 28 28 C 1.47960 * 90.80030 * 24.60022 * 15 14 13 29 29 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 32 32 H 1.09001 * 109.46938 * 299.99659 * 5 4 2 33 33 H 1.08999 * 109.47317 * 59.99592 * 5 4 2 34 34 H 1.08997 * 115.55053 * 29.33632 * 6 5 4 35 35 H 1.08997 * 117.49793 * 0.02562 * 7 6 5 36 36 H 1.09003 * 117.49736 * 145.02500 * 7 6 5 37 37 H 1.08999 * 117.49883 * 252.50910 * 8 7 6 38 38 H 1.09001 * 117.49630 * 107.48754 * 8 7 6 39 39 H 1.09001 * 109.47347 * 89.99260 * 12 11 9 40 40 H 1.08991 * 109.47839 * 210.00156 * 12 11 9 41 41 H 1.09006 * 109.46929 * 330.00353 * 12 11 9 42 42 H 1.09003 * 112.93385 * 350.33937 * 13 11 9 43 43 H 1.08997 * 113.76060 * 336.24167 * 14 13 11 44 44 H 1.08998 * 113.75804 * 107.60814 * 14 13 11 45 45 H 1.08995 * 109.47093 * 190.56643 * 16 15 14 46 46 H 1.09004 * 109.46741 * 310.56978 * 16 15 14 47 47 H 0.97006 * 119.99792 * 0.02562 * 19 17 16 48 48 H 0.96992 * 120.00147 * 180.02562 * 23 22 20 49 49 H 1.09002 * 113.75933 * 221.08525 * 28 15 14 50 50 H 1.09000 * 113.75738 * 89.72095 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.2001 0.1828 -2.2941 6 6 2.7090 -0.6408 -3.4788 7 6 4.1059 -0.3200 -4.0141 8 6 2.8678 0.0760 -4.8212 9 6 2.0324 -0.7104 1.2304 10 8 2.6530 -1.7467 1.1215 11 7 1.7920 -0.1941 2.4519 12 6 1.0419 1.0574 2.5837 13 6 2.2799 -0.8850 3.6483 14 6 1.2945 -0.8479 4.8303 15 7 2.4807 -0.5878 5.6796 16 6 2.1977 0.4521 6.6779 17 6 1.2490 -0.0918 7.7148 18 8 0.8483 -1.2336 7.6307 19 7 0.8456 0.6904 8.7355 20 6 -0.0170 0.1954 9.6791 21 1 -0.3737 -0.8212 9.6042 22 6 -0.4325 1.0018 10.7318 23 7 0.0020 2.2387 10.8231 24 14 -1.6073 0.3271 12.0178 25 1 -0.9888 -0.8456 12.6866 26 1 -1.8930 1.3782 13.0271 27 1 -2.8736 -0.0877 11.3623 28 6 3.2122 -0.0268 4.5223 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2538 0.6545 -2.5589 33 1 2.9319 0.9512 -2.0451 34 1 2.3887 -1.6825 -3.4994 35 1 4.6625 0.4775 -3.5220 36 1 4.7051 -1.1508 -4.3869 37 1 2.6525 -0.4942 -5.7249 38 1 2.6098 1.1343 -4.8603 39 1 -0.0220 0.8361 2.6682 40 1 1.3746 1.5883 3.4755 41 1 1.2150 1.6789 1.7050 42 1 2.6714 -1.8795 3.4344 43 1 0.5919 -0.0156 4.7904 44 1 0.8115 -1.8045 5.0296 45 1 3.1271 0.7559 7.1595 46 1 1.7444 1.3133 6.1869 47 1 1.1657 1.6036 8.8025 48 1 -0.2876 2.8014 11.5580 49 1 4.2586 -0.3287 4.4760 50 1 3.0716 1.0462 4.3922 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483855302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = -39.250757 kcal Electronic energy + Delta-G solvation = -29381.411140 eV Core-core repulsion = 25218.632408 eV Total energy + Delta-G solvation = -4162.778732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90159 -39.59271 -38.46331 -37.67702 -36.79321 -35.25818 -33.91496 -31.93216 -31.27795 -29.78344 -27.61841 -27.23292 -26.09276 -25.72459 -24.53016 -23.10821 -22.80997 -21.23924 -20.32116 -19.31174 -19.04120 -17.98821 -17.76982 -16.98076 -16.68899 -16.26652 -16.07659 -15.73133 -15.52367 -15.08797 -14.72243 -14.58534 -14.31598 -13.97715 -13.95330 -13.81364 -13.33994 -13.17172 -13.02562 -12.82129 -12.69321 -12.53319 -12.21349 -12.06949 -12.02992 -11.94362 -11.76297 -11.53108 -11.41699 -11.09619 -10.99766 -10.89819 -10.72435 -10.61427 -10.45863 -10.23387 -10.11180 -9.63807 -9.51918 -8.81891 -8.72109 -8.27688 -7.99031 -6.44222 -3.85063 2.36841 2.42667 3.18368 3.19316 3.24311 3.28853 3.49395 3.86155 3.99775 4.14324 4.22256 4.34180 4.41972 4.45686 4.49948 4.59686 4.64331 4.74626 4.82093 4.85349 4.94905 4.98385 5.10118 5.15456 5.17179 5.19140 5.20280 5.28835 5.30882 5.40365 5.43144 5.46164 5.63356 5.66595 5.71956 5.75005 5.77253 5.77554 5.94708 6.14446 6.22522 6.29803 6.55510 6.73149 7.09021 7.18508 7.52722 7.97988 8.02851 8.58585 9.15402 9.51037 10.02857 10.73402 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031440 B = 0.001744 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.372935 B =16051.151233 C =16279.551813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 H 0.085 0.915 4 O -0.354 6.354 5 C 0.091 3.909 6 C -0.153 4.153 7 C -0.176 4.176 8 C -0.174 4.174 9 C 0.516 3.484 10 O -0.515 6.515 11 N -0.604 5.604 12 C 0.068 3.932 13 C 0.114 3.886 14 C 0.014 3.986 15 N -0.449 5.449 16 C 0.014 3.986 17 C 0.442 3.558 18 O -0.578 6.578 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.013 4.013 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.129 0.871 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.094 0.906 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.960 4.562 -27.163 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.012 3.988 3 H 0.102 0.898 4 O -0.272 6.272 5 C 0.015 3.985 6 C -0.171 4.171 7 C -0.213 4.213 8 C -0.211 4.211 9 C 0.303 3.697 10 O -0.389 6.389 11 N -0.339 5.339 12 C -0.074 4.074 13 C 0.011 3.989 14 C -0.116 4.116 15 N -0.171 5.171 16 C -0.118 4.118 17 C 0.227 3.773 18 O -0.461 6.461 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.143 4.143 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.147 0.853 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.113 0.887 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.307 2.653 -26.736 27.210 hybrid contribution -0.828 1.584 0.526 1.863 sum 3.479 4.238 -26.209 26.777 Atomic orbital electron populations 1.22391 0.93368 1.04305 1.03570 1.21874 0.95282 0.96010 0.85607 0.89751 1.88052 1.86459 1.33948 1.18713 1.22116 0.99202 0.91945 0.85279 1.22104 1.00587 1.01162 0.93248 1.23076 0.90838 1.03640 1.03774 1.22984 1.02545 1.01071 0.94487 1.20382 0.79780 0.85512 0.84040 1.90726 1.39212 1.22989 1.85965 1.47852 1.55708 1.24730 1.05622 1.21986 0.96637 0.85618 1.03209 1.23273 0.95487 0.98051 0.82103 1.24294 0.93869 1.03781 0.89629 1.68402 1.11228 1.32008 1.05489 1.22439 1.00445 0.93462 0.95457 1.19666 0.85847 0.87254 0.84486 1.90534 1.59962 1.18523 1.77108 1.41853 1.41820 1.14061 1.22300 1.19655 1.21339 0.99531 1.02411 0.87970 1.25256 0.98629 0.95314 0.98662 1.69600 1.44976 1.06836 1.32941 0.85915 0.80266 0.78270 0.79767 1.19864 1.20970 1.19926 1.24507 1.00504 0.98292 0.91020 0.91207 0.90897 0.90146 0.92651 0.93081 0.86640 0.88652 0.88486 0.88333 0.88677 0.91577 0.90571 0.90866 0.85279 0.91069 0.88081 0.88982 0.92973 0.77525 0.91822 0.88745 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 9.25 37.16 0.34 -0.96 16 2 C 0.07 0.68 2.32 -27.88 -0.06 0.62 16 3 H 0.08 0.56 6.78 -51.93 -0.35 0.21 16 4 O -0.35 -3.96 9.53 -55.09 -0.52 -4.48 16 5 C 0.09 0.70 6.03 37.16 0.22 0.93 16 6 C -0.15 -1.16 6.06 -90.62 -0.55 -1.71 16 7 C -0.18 -1.16 10.18 -26.73 -0.27 -1.43 16 8 C -0.17 -0.96 10.25 -26.72 -0.27 -1.23 16 9 C 0.52 6.52 7.10 -10.99 -0.08 6.44 16 10 O -0.52 -8.81 15.98 -14.30 -0.23 -9.04 16 11 N -0.60 -6.65 3.09 -175.28 -0.54 -7.19 16 12 C 0.07 0.51 7.51 59.85 0.45 0.96 16 13 C 0.11 1.51 4.39 -69.63 -0.31 1.20 16 14 C 0.01 0.21 6.22 -2.63 -0.02 0.19 16 15 N -0.45 -7.41 5.95 -239.70 -1.43 -8.84 16 16 C 0.01 0.24 5.31 -4.98 -0.03 0.22 16 17 C 0.44 10.31 7.59 -10.99 -0.08 10.23 16 18 O -0.58 -15.56 15.13 5.54 0.08 -15.48 16 19 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 23 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 24 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C -0.01 -0.17 7.49 -2.76 -0.02 -0.19 16 29 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.48 5.12 -51.93 -0.27 0.21 16 32 H 0.06 0.33 7.87 -51.93 -0.41 -0.07 16 33 H 0.05 0.35 7.82 -51.93 -0.41 -0.06 16 34 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 0.58 8.03 -51.93 -0.42 0.17 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.46 7.02 -51.93 -0.36 0.09 16 40 H 0.08 0.57 6.35 -51.93 -0.33 0.24 16 41 H 0.07 0.37 6.07 -51.93 -0.32 0.05 16 42 H 0.13 1.94 7.22 -51.93 -0.37 1.57 16 43 H 0.07 1.02 6.48 -51.93 -0.34 0.68 16 44 H 0.10 1.77 8.10 -51.93 -0.42 1.35 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 46 H 0.05 0.78 7.70 -51.93 -0.40 0.38 16 47 H 0.39 9.31 7.90 -40.82 -0.32 8.98 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 49 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.07 0.75 6.49 -51.93 -0.34 0.42 16 LS Contribution 403.04 15.07 6.07 6.07 Total: -1.00 -34.67 403.04 -9.76 -44.43 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.93 Total: 8.90 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -0.91 Total: 7.37 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -1.30 Total: -53.65 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.67 Total: -29.01 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.67 -9.76 -44.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483855302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.178 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds