Wall clock time and date at job start Sat Apr 11 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 120.00254 * 2 1 4 4 N 1.34784 * 120.00129 * 180.02562 * 2 1 3 5 5 C 1.46491 * 119.99976 * 180.27786 * 4 2 1 6 6 H 1.09007 * 109.47404 * 34.71901 * 5 4 2 7 7 C 1.53007 * 109.47318 * 274.72370 * 5 4 2 8 8 C 1.50704 * 109.47473 * 154.72283 * 5 4 2 9 9 O 1.21278 * 119.99544 * 9.92317 * 8 5 4 10 10 N 1.34771 * 119.99962 * 189.92249 * 8 5 4 11 11 C 1.46933 * 120.64831 * 3.05284 * 10 8 5 12 12 C 1.53620 * 108.53839 * 126.29309 * 11 10 8 13 13 C 1.52991 * 109.27668 * 54.80772 * 12 11 10 14 14 C 1.52989 * 109.63346 * 298.66032 * 13 12 11 15 15 C 1.46938 * 120.63880 * 183.32610 * 10 8 5 16 16 C 1.53259 * 109.36212 * 178.71585 * 13 12 11 17 17 N 1.47162 * 108.40675 * 187.91598 * 16 13 12 18 18 C 1.36940 * 120.98351 * 230.49511 * 17 16 13 19 19 H 1.07997 * 119.99811 * 153.83617 * 18 17 16 20 20 C 1.38810 * 120.00029 * 333.83145 * 18 17 16 21 21 N 1.31624 * 119.99893 * 344.04397 * 20 18 17 22 22 Si 1.86800 * 120.00012 * 164.04731 * 20 18 17 23 23 H 1.48492 * 109.47114 * 60.00150 * 22 20 18 24 24 H 1.48498 * 109.46989 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47022 * 299.99963 * 22 20 18 26 26 C 1.47148 * 118.02652 * 50.47069 * 17 16 13 27 27 C 1.53297 * 108.37765 * 309.40892 * 26 17 16 28 28 O 1.42898 * 109.54726 * 58.91516 * 13 12 11 29 29 H 1.09004 * 109.47053 * 269.99939 * 1 2 3 30 30 H 1.08989 * 109.47160 * 30.00095 * 1 2 3 31 31 H 1.09005 * 109.46696 * 150.00430 * 1 2 3 32 32 H 0.96993 * 119.99989 * 359.97438 * 4 2 1 33 33 H 1.08996 * 109.47566 * 173.55752 * 7 5 4 34 34 H 1.09005 * 109.46689 * 293.55710 * 7 5 4 35 35 H 1.08999 * 109.46710 * 53.55323 * 7 5 4 36 36 H 1.08999 * 109.58558 * 246.12954 * 11 10 8 37 37 H 1.09000 * 109.58198 * 6.55090 * 11 10 8 38 38 H 1.09000 * 109.62675 * 294.80760 * 12 11 10 39 39 H 1.09000 * 109.42846 * 174.68822 * 12 11 10 40 40 H 1.09005 * 109.48774 * 301.24038 * 14 13 12 41 41 H 1.08999 * 109.51131 * 181.18657 * 14 13 12 42 42 H 1.09005 * 109.58761 * 353.44355 * 15 10 8 43 43 H 1.09005 * 109.58267 * 113.72258 * 15 10 8 44 44 H 1.08995 * 109.67305 * 307.64113 * 16 13 12 45 45 H 1.08995 * 109.67527 * 68.18517 * 16 13 12 46 46 H 0.97005 * 119.99537 * 179.97438 * 21 20 18 47 47 H 1.09010 * 109.68157 * 69.13187 * 26 17 16 48 48 H 1.09005 * 109.68417 * 189.68295 * 26 17 16 49 49 H 1.08998 * 109.51370 * 172.27764 * 27 26 17 50 50 H 1.08998 * 109.51087 * 292.42765 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6458 -1.1672 0.0056 6 1 4.0068 -0.3242 0.5949 7 6 4.1619 -1.0443 -1.4295 8 6 4.1458 -2.4537 0.6107 9 8 3.3715 -3.3605 0.8326 10 7 5.4531 -2.5965 0.9053 11 6 6.3920 -1.4842 0.7047 12 6 7.1437 -1.2361 2.0212 13 6 7.8016 -2.5387 2.4804 14 6 6.7259 -3.5974 2.7310 15 6 5.9683 -3.8696 1.4277 16 6 8.5788 -2.2859 3.7769 17 7 9.3552 -3.4945 4.0964 18 6 9.2977 -4.0605 5.3420 19 1 9.4967 -5.1148 5.4658 20 6 8.9839 -3.2792 6.4456 21 7 9.0493 -1.9672 6.3631 22 14 8.4688 -4.0898 8.0478 23 1 9.5625 -4.9703 8.5311 24 1 8.1903 -3.0439 9.0645 25 1 7.2447 -4.8995 7.8217 26 6 10.1947 -4.0770 3.0375 27 6 9.3369 -4.2449 1.7782 28 8 8.7020 -3.0011 1.4718 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 1.6960 -2.0072 -0.0005 33 1 5.2457 -0.9292 -1.4173 34 1 3.8982 -1.9421 -1.9886 35 1 3.7094 -0.1741 -1.9050 36 1 7.1015 -1.7422 -0.0815 37 1 5.8407 -0.5873 0.4223 38 1 6.4439 -0.8936 2.7835 39 1 7.9103 -0.4774 1.8635 40 1 6.0295 -3.2362 3.4878 41 1 7.1950 -4.5179 3.0782 42 1 5.1374 -4.5476 1.6228 43 1 6.6422 -4.3181 0.6977 44 1 9.2540 -1.4412 3.6412 45 1 7.8816 -2.0727 4.5871 46 1 8.8296 -1.4212 7.1342 47 1 11.0321 -3.4121 2.8255 48 1 10.5693 -5.0489 3.3589 49 1 9.9703 -4.5456 0.9436 50 1 8.5781 -5.0074 1.9535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485007687.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:28 Heat of formation + Delta-G solvation = -85.786304 kcal Electronic energy + Delta-G solvation = -31776.512330 eV Core-core repulsion = 27611.715666 eV Total energy + Delta-G solvation = -4164.796664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.82032 -39.73387 -38.81833 -36.25810 -35.19947 -34.42220 -32.63703 -31.85447 -31.25686 -30.71330 -29.06707 -28.28936 -26.66592 -24.90178 -23.46239 -23.39421 -22.65865 -21.09124 -20.60856 -19.59506 -18.68560 -17.73276 -16.97193 -16.79583 -16.35054 -15.73627 -15.54419 -15.31708 -15.17957 -14.68984 -14.48196 -14.33897 -13.97342 -13.81892 -13.64120 -13.56298 -13.43428 -13.04637 -12.84938 -12.76507 -12.57012 -12.46742 -12.30664 -12.03146 -11.88915 -11.79164 -11.54465 -11.06578 -10.99739 -10.89607 -10.72355 -10.61140 -10.29679 -10.23711 -10.15727 -9.98901 -9.83607 -9.45694 -9.36394 -9.05926 -8.57007 -8.50943 -6.74832 -5.86056 -3.29726 2.35416 2.50172 2.66756 3.21531 3.33166 3.39683 3.40129 4.20891 4.29806 4.42611 4.57143 4.80931 4.82091 4.94464 4.95652 5.05759 5.12676 5.26279 5.31082 5.34415 5.38840 5.43988 5.48223 5.52924 5.58159 5.59017 5.74473 5.81010 5.86988 5.90452 5.93720 6.06568 6.13329 6.16829 6.19651 6.34859 6.44740 6.50137 6.66383 6.74728 6.81926 7.07571 7.27019 7.36296 7.47503 7.68390 7.91455 7.96067 8.03317 8.31826 9.09805 9.72701 10.29536 11.21470 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014957 B = 0.003131 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.568291 B = 8940.171965 C = 9781.942658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.714 5.714 5 C 0.122 3.878 6 H 0.113 0.887 7 C -0.159 4.159 8 C 0.512 3.488 9 O -0.547 6.547 10 N -0.596 5.596 11 C 0.106 3.894 12 C -0.117 4.117 13 C 0.095 3.905 14 C -0.145 4.145 15 C 0.117 3.883 16 C 0.158 3.842 17 N -0.593 5.593 18 C -0.253 4.253 19 H 0.067 0.933 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.903 3.097 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.110 3.890 27 C 0.046 3.954 28 O -0.382 6.382 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.410 0.590 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.026 0.974 45 H 0.094 0.906 46 H 0.255 0.745 47 H 0.025 0.975 48 H 0.060 0.940 49 H 0.079 0.921 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.350 0.974 -15.498 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.368 5.368 5 C 0.014 3.986 6 H 0.131 0.869 7 C -0.218 4.218 8 C 0.299 3.701 9 O -0.426 6.426 10 N -0.328 5.328 11 C -0.016 4.016 12 C -0.155 4.155 13 C 0.055 3.945 14 C -0.184 4.184 15 C -0.005 4.005 16 C 0.032 3.968 17 N -0.316 5.316 18 C -0.383 4.383 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C -0.017 4.017 27 C -0.032 4.032 28 O -0.302 6.302 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.247 0.753 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.113 0.887 46 H 0.065 0.935 47 H 0.042 0.958 48 H 0.078 0.922 49 H 0.097 0.903 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.298 1.453 -15.380 19.139 hybrid contribution -0.284 -0.921 1.279 1.602 sum -11.582 0.532 -14.101 18.256 Atomic orbital electron populations 1.21865 0.91274 1.04884 1.05017 1.20847 0.90743 0.83166 0.75218 1.90732 1.70744 1.31345 1.49732 1.45908 1.05860 1.09766 1.75313 1.20776 0.82013 0.97256 0.98580 0.86933 1.22166 1.02266 1.03186 0.94151 1.20476 0.82337 0.88990 0.78290 1.90658 1.54822 1.42512 1.54580 1.48068 1.06957 1.14664 1.63121 1.22000 0.92102 0.88570 0.98941 1.21925 0.99519 0.97403 0.96695 1.22150 0.89130 0.92216 0.91036 1.22314 0.97936 1.01924 0.96191 1.21653 0.98301 0.84604 0.95932 1.21382 0.94317 0.88464 0.92646 1.44045 1.48566 1.30458 1.08580 1.19128 1.43923 0.92056 0.83156 0.91513 1.25027 1.01589 0.95353 0.97570 1.69999 1.51434 1.03149 1.30185 0.86361 0.78834 0.78370 0.83172 1.20865 1.21551 1.20964 1.21587 0.92948 0.97813 0.89324 1.23011 0.95802 0.86174 0.98194 1.87762 1.59681 1.38825 1.43883 0.88658 0.88778 0.90066 0.75253 0.90424 0.91837 0.90834 0.90018 0.89975 0.90261 0.89822 0.91135 0.89132 0.89572 0.91240 0.95564 0.88746 0.93470 0.95756 0.92174 0.90297 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.30 36.01 0.37 -0.73 16 2 C 0.51 5.49 7.91 -10.98 -0.09 5.40 16 3 O -0.55 -7.99 16.76 5.55 0.09 -7.90 16 4 N -0.71 -7.42 5.00 -54.93 -0.27 -7.69 16 5 C 0.12 1.38 2.13 -69.08 -0.15 1.23 16 6 H 0.11 1.36 6.44 -51.92 -0.33 1.02 16 7 C -0.16 -1.49 9.17 37.16 0.34 -1.15 16 8 C 0.51 6.95 7.04 -10.99 -0.08 6.87 16 9 O -0.55 -8.77 15.24 5.56 0.08 -8.69 16 10 N -0.60 -8.04 2.97 -172.49 -0.51 -8.56 16 11 C 0.11 1.29 5.01 -3.48 -0.02 1.27 16 12 C -0.12 -1.73 5.12 -26.41 -0.14 -1.86 16 13 C 0.10 1.69 0.68 -90.50 -0.06 1.63 16 14 C -0.15 -2.51 4.33 -26.64 -0.12 -2.62 16 15 C 0.12 1.73 6.20 -3.71 -0.02 1.71 16 16 C 0.16 3.58 4.10 -3.55 -0.01 3.56 16 17 N -0.59 -14.17 2.55 -171.84 -0.44 -14.61 16 18 C -0.25 -6.67 9.66 -15.06 -0.15 -6.82 16 19 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.09 4.97 -17.43 -0.09 0.00 16 21 N -0.90 -25.45 11.07 55.49 0.61 -24.84 16 22 Si 0.90 21.27 29.58 -169.99 -5.03 16.24 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.11 2.20 6.73 -3.53 -0.02 2.18 16 27 C 0.05 0.77 6.60 37.31 0.25 1.02 16 28 O -0.38 -6.65 9.00 -35.23 -0.32 -6.96 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.56 8.14 -51.94 -0.42 0.14 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.41 3.87 7.72 -40.82 -0.32 3.55 16 33 H 0.08 0.65 6.23 -51.93 -0.32 0.33 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.97 7.82 -51.93 -0.41 0.56 16 37 H 0.08 0.83 4.91 -51.93 -0.26 0.57 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.09 1.71 6.16 -51.93 -0.32 1.39 16 42 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 43 H 0.07 0.99 7.83 -51.93 -0.41 0.59 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 2.40 6.10 -51.93 -0.32 2.09 16 46 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 48 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 49 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 50 H 0.05 0.76 6.29 -51.93 -0.33 0.43 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -32.24 383.63 -7.95 -40.19 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.98 Total: 5.34 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 0.02 Total: 11.69 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.61 Total: -55.69 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.14 Total: -23.55 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.24 -7.95 -40.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485007687.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.598 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds