Wall clock time and date at job start Sat Apr 11 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.46901 * 2 1 4 4 C 1.46768 * 124.35132 * 269.95232 * 3 2 1 5 5 C 1.54481 * 105.47437 * 197.04441 * 4 3 2 6 6 H 1.08994 * 111.00286 * 92.71540 * 5 4 3 7 7 C 1.50697 * 110.96703 * 216.46574 * 5 4 3 8 8 O 1.21285 * 120.00369 * 18.07316 * 7 5 4 9 9 N 1.34774 * 120.00176 * 198.07378 * 7 5 4 10 10 C 1.46927 * 120.63246 * 174.90901 * 9 7 5 11 11 C 1.53190 * 108.77555 * 233.63147 * 10 9 7 12 12 C 1.53040 * 109.31660 * 305.36523 * 11 10 9 13 13 C 1.53047 * 109.53599 * 61.36406 * 12 11 10 14 14 C 1.53001 * 109.52294 * 178.66661 * 13 12 11 15 15 O 1.42901 * 109.47162 * 299.92042 * 14 13 12 16 16 N 1.46509 * 109.49375 * 58.58748 * 13 12 11 17 17 C 1.36931 * 120.00017 * 60.16490 * 16 13 12 18 18 H 1.08002 * 120.00189 * 359.97438 * 17 16 13 19 19 C 1.38812 * 120.00096 * 180.27101 * 17 16 13 20 20 N 1.31614 * 120.00372 * 179.72054 * 19 17 16 21 21 Si 1.86802 * 119.99582 * 359.72667 * 19 17 16 22 22 H 1.48499 * 109.47212 * 89.99853 * 21 19 17 23 23 H 1.48505 * 109.46759 * 209.99756 * 21 19 17 24 24 H 1.48500 * 109.47156 * 329.99342 * 21 19 17 25 25 C 1.46926 * 120.63028 * 354.93558 * 9 7 5 26 26 C 1.54629 * 101.76215 * 334.58005 * 5 4 3 27 27 C 1.34419 * 124.35107 * 89.97923 * 3 2 1 28 28 O 1.21281 * 124.93818 * 359.60631 * 27 3 2 29 29 H 1.08996 * 109.47172 * 59.99751 * 1 2 3 30 30 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46515 * 299.99948 * 1 2 3 32 32 H 1.09001 * 109.46864 * 240.00405 * 2 1 3 33 33 H 1.08996 * 109.47172 * 120.00249 * 2 1 3 34 34 H 1.08995 * 110.24544 * 78.03760 * 4 3 2 35 35 H 1.09002 * 110.24341 * 316.03852 * 4 3 2 36 36 H 1.09001 * 109.58833 * 353.42233 * 10 9 7 37 37 H 1.09002 * 109.58279 * 113.70710 * 10 9 7 38 38 H 1.09004 * 109.49735 * 65.31849 * 11 10 9 39 39 H 1.09001 * 109.49938 * 185.41588 * 11 10 9 40 40 H 1.08998 * 109.46008 * 301.34825 * 12 11 10 41 41 H 1.08999 * 109.46110 * 181.38484 * 12 11 10 42 42 H 1.09000 * 109.46972 * 59.92318 * 14 13 12 43 43 H 1.08998 * 109.46951 * 179.97438 * 14 13 12 44 44 H 0.96697 * 113.99814 * 180.02562 * 15 14 13 45 45 H 0.97000 * 119.99536 * 240.15939 * 16 13 12 46 46 H 0.97001 * 120.00139 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.58438 * 6.57948 * 25 9 7 48 48 H 1.08999 * 109.70486 * 246.22848 * 25 9 7 49 49 H 1.09002 * 110.48775 * 143.47780 * 26 5 4 50 50 H 1.09000 * 110.48826 * 265.98756 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2953 2.1617 -1.2117 5 6 3.1756 3.3436 -0.7484 6 1 4.2343 3.1030 -0.8439 7 6 2.8394 4.5983 -1.5125 8 8 1.7869 4.6811 -2.1095 9 7 3.7082 5.6284 -1.5324 10 6 3.4463 6.8127 -2.3615 11 6 4.6628 7.0662 -3.2574 12 6 5.9181 7.1725 -2.3884 13 6 6.1355 5.8553 -1.6400 14 6 7.4087 5.9503 -0.7970 15 8 8.5273 6.2011 -1.6502 16 7 6.2684 4.7609 -2.6049 17 6 7.2777 4.7826 -3.5300 18 1 7.9756 5.6066 -3.5486 19 6 7.4002 3.7485 -4.4479 20 7 8.3670 3.7720 -5.3406 21 14 6.1928 2.3235 -4.4160 22 1 5.0369 2.6344 -5.2949 23 1 6.8669 1.0926 -4.9017 24 1 5.7148 2.1106 -3.0263 25 6 4.9356 5.5881 -0.7258 26 6 2.7697 3.4753 0.7378 27 6 2.2708 2.0964 1.1098 28 8 2.1210 1.6945 2.2442 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.3651 2.5306 -1.6435 35 1 2.8336 1.5525 -1.9379 36 1 2.5665 6.6379 -2.9808 37 1 3.2758 7.6773 -1.7201 38 1 4.7756 6.2405 -3.9600 39 1 4.5217 7.9964 -3.8079 40 1 5.7946 7.9824 -1.6695 41 1 6.7816 7.3774 -3.0212 42 1 7.3094 6.7647 -0.0793 43 1 7.5625 5.0120 -0.2640 44 1 9.3705 6.2731 -1.1823 45 1 5.6414 4.0210 -2.5883 46 1 8.4529 3.0491 -5.9817 47 1 5.0385 4.6053 -0.2658 48 1 4.8904 6.3519 0.0505 49 1 3.6327 3.7457 1.3464 50 1 1.9766 4.2141 0.8527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673675813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:26 Heat of formation + Delta-G solvation = -89.036357 kcal Electronic energy + Delta-G solvation = -32335.486744 eV Core-core repulsion = 28170.549147 eV Total energy + Delta-G solvation = -4164.937597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.13442 -39.83705 -38.19764 -36.46408 -35.78010 -34.21718 -33.91028 -32.24492 -31.66420 -29.84732 -29.41194 -27.92875 -25.79170 -25.40463 -24.00468 -23.33214 -22.91521 -21.31659 -19.67118 -19.39645 -18.43326 -17.97548 -17.67675 -16.92990 -16.46644 -16.09670 -15.80935 -15.33626 -15.04760 -14.91209 -14.28579 -14.20748 -14.11074 -13.90745 -13.71155 -13.69327 -13.49554 -13.22678 -13.03812 -12.75016 -12.57336 -12.44916 -12.33486 -12.22063 -11.99987 -11.72053 -11.55263 -11.35830 -11.27587 -11.00811 -10.90576 -10.49038 -10.44199 -10.37326 -10.13217 -10.08071 -9.66158 -9.55272 -9.05837 -8.90644 -8.89033 -8.51342 -7.28201 -5.68421 -3.04413 2.37825 2.48961 2.76592 2.99950 3.28797 3.36457 3.43748 3.99753 4.17815 4.38206 4.58712 4.64969 4.70417 4.77461 4.85268 4.93641 4.96026 5.14565 5.19413 5.26096 5.29782 5.34340 5.37914 5.44556 5.46397 5.53800 5.60617 5.61054 5.63791 5.68451 5.72058 5.73435 5.82690 5.93694 5.94597 5.98347 6.27537 6.28258 6.33177 6.47422 6.64269 6.90053 6.90198 6.98904 7.38893 7.97954 8.11032 8.13587 8.29289 8.52833 9.29950 9.97465 10.12662 11.49804 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011462 B = 0.004447 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.193694 B = 6294.471192 C = 7173.265010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.616 5.616 4 C 0.114 3.886 5 C -0.131 4.131 6 H 0.117 0.883 7 C 0.531 3.469 8 O -0.540 6.540 9 N -0.593 5.593 10 C 0.114 3.886 11 C -0.129 4.129 12 C -0.116 4.116 13 C 0.193 3.807 14 C 0.076 3.924 15 O -0.532 6.532 16 N -0.731 5.731 17 C -0.215 4.215 18 H 0.118 0.882 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.868 3.132 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.283 1.283 25 C 0.102 3.898 26 C -0.139 4.139 27 C 0.523 3.477 28 O -0.533 6.533 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.082 0.918 42 H 0.027 0.973 43 H 0.037 0.963 44 H 0.356 0.644 45 H 0.355 0.645 46 H 0.256 0.744 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.110 0.890 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.484 1.585 12.093 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.350 5.350 4 C -0.010 4.010 5 C -0.153 4.153 6 H 0.135 0.865 7 C 0.318 3.682 8 O -0.417 6.417 9 N -0.325 5.325 10 C -0.007 4.007 11 C -0.167 4.167 12 C -0.155 4.155 13 C 0.101 3.899 14 C -0.005 4.005 15 O -0.335 6.335 16 N -0.373 5.373 17 C -0.345 4.345 18 H 0.135 0.865 19 C -0.194 4.194 20 N -0.585 5.585 21 Si 0.699 3.301 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.210 1.210 25 C -0.021 4.021 26 C -0.179 4.179 27 C 0.310 3.690 28 O -0.410 6.410 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.201 0.799 45 H 0.188 0.812 46 H 0.066 0.934 47 H 0.103 0.897 48 H 0.097 0.903 49 H 0.129 0.871 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.434 1.362 11.742 16.446 hybrid contribution -0.174 -1.201 0.242 1.238 sum -11.609 0.160 11.983 16.685 Atomic orbital electron populations 1.22162 0.95650 1.02337 1.02632 1.21376 0.94507 0.80821 1.03335 1.48331 1.65582 1.13936 1.07192 1.22061 1.00587 0.91210 0.87097 1.22320 1.02998 0.94474 0.95524 0.86459 1.19895 0.83676 0.83808 0.80811 1.90678 1.24146 1.81453 1.45472 1.47875 1.21195 1.18248 1.45167 1.21695 0.99590 0.85978 0.93484 1.21816 0.93670 1.02615 0.98567 1.21829 0.98621 0.96237 0.98837 1.19929 0.90054 0.90388 0.89537 1.22596 0.88683 0.97204 0.92043 1.86906 1.16526 1.94851 1.35225 1.42753 1.35161 1.21797 1.37610 1.19397 1.03851 1.06682 1.04572 0.86509 1.24640 0.98087 0.98069 0.98594 1.69665 1.33599 1.33760 1.21428 0.86818 0.81907 0.84405 0.76956 1.21344 1.22012 1.20993 1.22020 0.83906 1.02875 0.93335 1.22304 1.04173 0.96832 0.94640 1.20704 0.76698 0.87190 0.84384 1.90718 1.54105 1.75191 1.20988 0.92182 0.91378 0.92256 0.90114 0.89885 0.88640 0.89679 0.89461 0.91910 0.89681 0.91753 0.93674 0.89965 0.95475 0.94505 0.79902 0.81203 0.93405 0.89682 0.90322 0.87125 0.87245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.24 37.16 0.38 -1.16 16 2 C 0.12 1.22 6.65 -4.04 -0.03 1.19 16 3 N -0.62 -7.42 2.93 -172.41 -0.51 -7.92 16 4 C 0.11 1.39 6.83 -3.12 -0.02 1.37 16 5 C -0.13 -1.62 2.48 -90.14 -0.22 -1.84 16 6 H 0.12 1.47 6.75 -51.93 -0.35 1.12 16 7 C 0.53 7.65 6.84 -10.99 -0.08 7.58 16 8 O -0.54 -9.17 15.00 5.55 0.08 -9.08 16 9 N -0.59 -8.10 2.87 -172.77 -0.50 -8.59 16 10 C 0.11 1.54 6.42 -3.71 -0.02 1.52 16 11 C -0.13 -1.98 5.93 -26.61 -0.16 -2.14 16 12 C -0.12 -1.82 4.39 -26.69 -0.12 -1.94 16 13 C 0.19 3.08 0.68 -131.69 -0.09 2.99 16 14 C 0.08 1.12 6.08 37.16 0.23 1.35 16 15 O -0.53 -9.32 9.96 -35.23 -0.35 -9.68 16 16 N -0.73 -15.09 4.02 -47.11 -0.19 -15.27 16 17 C -0.22 -5.54 8.77 -15.06 -0.13 -5.67 16 18 H 0.12 3.29 5.54 -52.49 -0.29 3.00 16 19 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 20 N -0.94 -28.65 13.97 55.49 0.78 -27.87 16 21 Si 0.87 21.29 27.73 -169.99 -4.71 16.58 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 25 C 0.10 1.26 5.01 -3.71 -0.02 1.24 16 26 C -0.14 -1.51 6.22 -26.74 -0.17 -1.68 16 27 C 0.52 6.97 8.02 -10.86 -0.09 6.89 16 28 O -0.53 -8.74 17.60 5.56 0.10 -8.64 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 34 H 0.10 1.23 6.85 -51.93 -0.36 0.87 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.26 7.04 -51.93 -0.37 0.90 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.65 7.53 -51.93 -0.39 1.25 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.57 6.84 -51.93 -0.35 1.21 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.36 4.62 9.12 45.56 0.42 5.04 16 45 H 0.35 7.43 5.51 -40.82 -0.23 7.20 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.08 0.97 5.24 -51.93 -0.27 0.70 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.11 1.00 7.90 -51.93 -0.41 0.59 16 50 H 0.11 1.13 7.89 -51.93 -0.41 0.72 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -34.65 386.87 -7.34 -41.98 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -7.24 Total: 13.05 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -0.63 Total: 9.62 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.42 Total: -59.66 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.17 Total: -27.40 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.58 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.65 -7.34 -41.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673675813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.052 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds