Wall clock time and date at job start Sat Apr 11 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.46901 * 2 1 4 4 C 1.46768 * 124.35132 * 269.95232 * 3 2 1 5 5 C 1.54481 * 105.47437 * 197.04441 * 4 3 2 6 6 H 1.08994 * 111.00286 * 92.71540 * 5 4 3 7 7 C 1.50697 * 110.96703 * 216.46574 * 5 4 3 8 8 O 1.21285 * 120.00369 * 18.07316 * 7 5 4 9 9 N 1.34774 * 120.00176 * 198.07378 * 7 5 4 10 10 C 1.46927 * 120.63246 * 174.90901 * 9 7 5 11 11 C 1.53190 * 108.77555 * 233.63147 * 10 9 7 12 12 C 1.53040 * 109.31660 * 305.36523 * 11 10 9 13 13 C 1.53047 * 109.53599 * 61.36406 * 12 11 10 14 14 C 1.53001 * 109.52294 * 178.66661 * 13 12 11 15 15 O 1.42901 * 109.47162 * 299.92042 * 14 13 12 16 16 N 1.46509 * 109.49375 * 58.58748 * 13 12 11 17 17 C 1.36931 * 120.00017 * 60.16490 * 16 13 12 18 18 H 1.08002 * 120.00189 * 359.97438 * 17 16 13 19 19 C 1.38812 * 120.00096 * 180.27101 * 17 16 13 20 20 N 1.31614 * 120.00372 * 179.72054 * 19 17 16 21 21 Si 1.86802 * 119.99582 * 359.72667 * 19 17 16 22 22 H 1.48499 * 109.47212 * 89.99853 * 21 19 17 23 23 H 1.48505 * 109.46759 * 209.99756 * 21 19 17 24 24 H 1.48500 * 109.47156 * 329.99342 * 21 19 17 25 25 C 1.46926 * 120.63028 * 354.93558 * 9 7 5 26 26 C 1.54629 * 101.76215 * 334.58005 * 5 4 3 27 27 C 1.34419 * 124.35107 * 89.97923 * 3 2 1 28 28 O 1.21281 * 124.93818 * 359.60631 * 27 3 2 29 29 H 1.08996 * 109.47172 * 59.99751 * 1 2 3 30 30 H 1.08999 * 109.47042 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46515 * 299.99948 * 1 2 3 32 32 H 1.09001 * 109.46864 * 240.00405 * 2 1 3 33 33 H 1.08996 * 109.47172 * 120.00249 * 2 1 3 34 34 H 1.08995 * 110.24544 * 78.03760 * 4 3 2 35 35 H 1.09002 * 110.24341 * 316.03852 * 4 3 2 36 36 H 1.09001 * 109.58833 * 353.42233 * 10 9 7 37 37 H 1.09002 * 109.58279 * 113.70710 * 10 9 7 38 38 H 1.09004 * 109.49735 * 65.31849 * 11 10 9 39 39 H 1.09001 * 109.49938 * 185.41588 * 11 10 9 40 40 H 1.08998 * 109.46008 * 301.34825 * 12 11 10 41 41 H 1.08999 * 109.46110 * 181.38484 * 12 11 10 42 42 H 1.09000 * 109.46972 * 59.92318 * 14 13 12 43 43 H 1.08998 * 109.46951 * 179.97438 * 14 13 12 44 44 H 0.96697 * 113.99814 * 180.02562 * 15 14 13 45 45 H 0.97000 * 119.99536 * 240.15939 * 16 13 12 46 46 H 0.97001 * 120.00139 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.58438 * 6.57948 * 25 9 7 48 48 H 1.08999 * 109.70486 * 246.22848 * 25 9 7 49 49 H 1.09002 * 110.48775 * 143.47780 * 26 5 4 50 50 H 1.09000 * 110.48826 * 265.98756 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2953 2.1617 -1.2117 5 6 3.1756 3.3436 -0.7484 6 1 4.2343 3.1030 -0.8439 7 6 2.8394 4.5983 -1.5125 8 8 1.7869 4.6811 -2.1095 9 7 3.7082 5.6284 -1.5324 10 6 3.4463 6.8127 -2.3615 11 6 4.6628 7.0662 -3.2574 12 6 5.9181 7.1725 -2.3884 13 6 6.1355 5.8553 -1.6400 14 6 7.4087 5.9503 -0.7970 15 8 8.5273 6.2011 -1.6502 16 7 6.2684 4.7609 -2.6049 17 6 7.2777 4.7826 -3.5300 18 1 7.9756 5.6066 -3.5486 19 6 7.4002 3.7485 -4.4479 20 7 8.3670 3.7720 -5.3406 21 14 6.1928 2.3235 -4.4160 22 1 5.0369 2.6344 -5.2949 23 1 6.8669 1.0926 -4.9017 24 1 5.7148 2.1106 -3.0263 25 6 4.9356 5.5881 -0.7258 26 6 2.7697 3.4753 0.7378 27 6 2.2708 2.0964 1.1098 28 8 2.1210 1.6945 2.2442 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.3651 2.5306 -1.6435 35 1 2.8336 1.5525 -1.9379 36 1 2.5665 6.6379 -2.9808 37 1 3.2758 7.6773 -1.7201 38 1 4.7756 6.2405 -3.9600 39 1 4.5217 7.9964 -3.8079 40 1 5.7946 7.9824 -1.6695 41 1 6.7816 7.3774 -3.0212 42 1 7.3094 6.7647 -0.0793 43 1 7.5625 5.0120 -0.2640 44 1 9.3705 6.2731 -1.1823 45 1 5.6414 4.0210 -2.5883 46 1 8.4529 3.0491 -5.9817 47 1 5.0385 4.6053 -0.2658 48 1 4.8904 6.3519 0.0505 49 1 3.6327 3.7457 1.3464 50 1 1.9766 4.2141 0.8527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673675813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:25 Heat of formation + Delta-G solvation = -115.706981 kcal Electronic energy + Delta-G solvation = -32336.643269 eV Core-core repulsion = 28170.549147 eV Total energy + Delta-G solvation = -4166.094122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.15831 -40.92975 -39.43548 -37.52595 -36.99772 -35.50873 -35.10748 -33.69788 -33.09981 -31.08916 -30.70252 -28.87622 -26.91331 -26.50719 -25.24880 -24.91803 -23.85523 -22.44878 -20.72130 -20.49299 -19.85739 -19.55523 -18.77296 -17.98903 -17.71855 -17.15922 -16.82762 -16.54140 -16.34821 -16.09454 -15.89315 -15.44281 -15.16544 -15.03329 -14.77477 -14.69047 -14.57688 -14.46555 -14.28297 -14.17320 -13.81574 -13.73213 -13.31109 -13.22744 -12.97146 -12.95790 -12.76532 -12.60970 -12.55222 -12.38831 -12.07983 -12.06198 -11.77702 -11.74498 -11.57123 -11.28229 -11.18230 -10.79119 -10.73837 -10.45436 -9.85669 -9.61750 -9.15120 -7.81546 -5.12127 1.30469 1.35870 1.38964 1.44983 1.45636 1.81029 2.02057 2.58356 3.02881 3.24454 3.37888 3.45085 3.58723 3.65300 3.76954 3.87990 4.05162 4.09551 4.11755 4.18798 4.25466 4.38750 4.42077 4.45084 4.45425 4.52298 4.55105 4.64585 4.68720 4.72337 4.74373 4.80064 4.82246 4.87635 4.88684 5.01588 5.07686 5.20129 5.25766 5.44489 5.50123 5.58390 5.67844 5.96575 6.15840 6.32608 6.47502 6.99927 7.03788 7.17984 7.35689 8.02332 8.17040 9.40553 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011462 B = 0.004447 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.193694 B = 6294.471192 C = 7173.265010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.113 3.887 3 N -0.615 5.615 4 C 0.113 3.887 5 C -0.127 4.127 6 H 0.121 0.879 7 C 0.529 3.471 8 O -0.570 6.570 9 N -0.594 5.594 10 C 0.120 3.880 11 C -0.124 4.124 12 C -0.110 4.110 13 C 0.179 3.821 14 C 0.073 3.927 15 O -0.571 6.571 16 N -0.733 5.733 17 C -0.166 4.166 18 H 0.090 0.910 19 C -0.079 4.079 20 N -0.994 5.994 21 Si 0.924 3.076 22 H -0.297 1.297 23 H -0.310 1.310 24 H -0.245 1.245 25 C 0.105 3.895 26 C -0.127 4.127 27 C 0.515 3.485 28 O -0.570 6.570 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.374 0.626 45 H 0.355 0.645 46 H 0.246 0.754 47 H 0.101 0.899 48 H 0.124 0.876 49 H 0.136 0.864 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.857 2.360 15.117 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.348 5.348 4 C -0.010 4.010 5 C -0.148 4.148 6 H 0.139 0.861 7 C 0.317 3.683 8 O -0.450 6.450 9 N -0.325 5.325 10 C -0.002 4.002 11 C -0.163 4.163 12 C -0.149 4.149 13 C 0.088 3.912 14 C -0.007 4.007 15 O -0.376 6.376 16 N -0.375 5.375 17 C -0.298 4.298 18 H 0.107 0.893 19 C -0.268 4.268 20 N -0.648 5.648 21 Si 0.755 3.245 22 H -0.225 1.225 23 H -0.238 1.238 24 H -0.169 1.169 25 C -0.018 4.018 26 C -0.167 4.167 27 C 0.304 3.696 28 O -0.449 6.449 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.222 0.778 45 H 0.188 0.812 46 H 0.055 0.945 47 H 0.119 0.881 48 H 0.142 0.858 49 H 0.154 0.846 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.834 2.168 14.841 19.740 hybrid contribution 0.262 -1.281 -0.673 1.470 sum -12.572 0.887 14.168 18.963 Atomic orbital electron populations 1.22103 0.94933 1.03409 1.01662 1.21582 0.95140 0.80115 1.03995 1.48473 1.64905 1.14504 1.06888 1.22037 1.00373 0.91418 0.87149 1.22275 1.03004 0.93351 0.96216 0.86095 1.20199 0.83348 0.84265 0.80495 1.90673 1.25583 1.81968 1.46805 1.47974 1.21433 1.18043 1.45047 1.21656 0.97637 0.87234 0.93653 1.21729 0.94887 1.01386 0.98264 1.21742 0.96799 0.97428 0.98962 1.20401 0.92744 0.88613 0.89399 1.22643 0.86988 0.99202 0.91849 1.86829 1.18303 1.95063 1.37448 1.42775 1.33685 1.23366 1.37695 1.19318 1.02849 1.04114 1.03490 0.89290 1.25275 1.00462 1.01458 0.99585 1.69853 1.36749 1.34768 1.23445 0.85844 0.79273 0.80823 0.78584 1.22517 1.23759 1.16949 1.22192 0.81228 1.05479 0.92878 1.22309 1.05348 0.95418 0.93631 1.21124 0.76300 0.88138 0.84011 1.90701 1.55861 1.76095 1.22293 0.92298 0.89362 0.93928 0.88323 0.90336 0.89423 0.89298 0.90826 0.88350 0.94515 0.90460 0.89818 0.94171 0.91098 0.94046 0.77813 0.81226 0.94533 0.88135 0.85813 0.84563 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 10.24 71.98 0.74 -1.98 16 2 C 0.11 2.07 6.65 86.38 0.57 2.65 16 3 N -0.61 -13.56 2.93 -817.98 -2.40 -15.96 16 4 C 0.11 2.52 6.83 86.83 0.59 3.11 16 5 C -0.13 -2.70 2.48 -10.48 -0.03 -2.73 16 6 H 0.12 2.53 6.75 -2.39 -0.02 2.51 16 7 C 0.53 13.67 6.84 87.66 0.60 14.27 16 8 O -0.57 -18.33 15.00 -3.04 -0.05 -18.37 16 9 N -0.59 -13.95 2.87 -818.91 -2.35 -16.29 16 10 C 0.12 2.85 6.42 86.36 0.55 3.41 16 11 C -0.12 -3.63 5.93 30.67 0.18 -3.45 16 12 C -0.11 -3.18 4.39 30.62 0.13 -3.04 16 13 C 0.18 5.09 0.68 3.68 0.00 5.09 16 14 C 0.07 1.89 6.08 71.98 0.44 2.32 16 15 O -0.57 -19.19 9.96 -148.98 -1.48 -20.67 16 16 N -0.73 -29.08 4.02 -302.97 -1.22 -30.30 16 17 C -0.17 -8.64 8.77 84.03 0.74 -7.90 16 18 H 0.09 5.16 5.54 -2.91 -0.02 5.15 16 19 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 20 N -0.99 -63.66 13.97 21.65 0.30 -63.36 16 21 Si 0.92 44.68 27.73 68.60 1.90 46.59 16 22 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 23 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 24 H -0.25 -10.06 6.52 99.48 0.65 -9.41 16 25 C 0.10 2.04 5.01 86.36 0.43 2.47 16 26 C -0.13 -2.29 6.22 30.59 0.19 -2.10 16 27 C 0.52 12.60 8.02 87.90 0.71 13.31 16 28 O -0.57 -17.83 17.60 -3.03 -0.05 -17.89 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.53 7.93 -2.39 -0.02 1.51 16 34 H 0.09 2.12 6.85 -2.39 -0.02 2.11 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 1.99 7.04 -2.39 -0.02 1.98 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.42 7.53 -2.38 -0.02 1.40 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.51 6.84 -2.39 -0.02 1.49 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.37 9.19 9.12 -74.06 -0.68 8.51 16 45 H 0.35 14.03 5.51 -92.71 -0.51 13.52 16 46 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 47 H 0.10 1.71 5.24 -2.39 -0.01 1.70 16 48 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.14 1.77 7.90 -2.39 -0.02 1.76 16 50 H 0.12 1.99 7.89 -2.39 -0.02 1.97 16 Total: -1.00 -80.48 386.87 0.70 -79.78 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -0.28 Total: 35.12 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 6.32 Total: 21.36 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -5.66 Total: -125.92 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -1.58 Total: -56.93 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.90 Total: 46.59 kcal Total: -80.48 0.70 -79.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673675813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.930 kcal (2) G-P(sol) polarization free energy of solvation -80.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds