Wall clock time and date at job start Sat Apr 11 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47234 * 2 1 4 4 C 1.42898 * 114.00123 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47529 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.47140 * 64.99685 * 5 4 3 7 7 N 1.41595 * 114.00007 * 180.02562 * 6 5 4 8 8 C 1.34784 * 119.99861 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00093 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99865 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.47110 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47116 * 179.97438 * 11 10 8 13 13 C 1.39862 * 126.04094 * 269.68901 * 12 11 10 14 14 C 1.50702 * 125.90180 * 0.02562 * 13 12 11 15 15 N 1.30842 * 108.19992 * 179.81747 * 13 12 11 16 16 N 1.40084 * 108.20663 * 0.44091 * 15 13 12 17 17 C 1.46495 * 126.04013 * 179.73793 * 16 15 13 18 18 C 1.50699 * 109.47131 * 269.98016 * 17 16 15 19 19 H 1.08002 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00208 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00055 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99907 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46872 * 89.99940 * 22 20 18 24 24 H 1.48495 * 109.47211 * 210.00060 * 22 20 18 25 25 H 1.48505 * 109.47239 * 330.00326 * 22 20 18 26 26 C 1.34950 * 107.92381 * 359.71898 * 16 15 13 27 27 C 1.50694 * 126.12576 * 179.97438 * 26 16 15 28 28 H 1.09004 * 109.47253 * 300.00029 * 1 2 3 29 29 H 1.09007 * 109.46799 * 59.99469 * 1 2 3 30 30 H 1.09000 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46773 * 240.00198 * 2 1 3 32 32 H 1.09003 * 109.46978 * 120.00040 * 2 1 3 33 33 H 1.08997 * 109.47217 * 60.00187 * 4 3 2 34 34 H 1.09006 * 109.46698 * 300.00132 * 4 3 2 35 35 H 1.09002 * 109.46850 * 305.00236 * 5 4 3 36 36 H 1.08992 * 109.47628 * 184.99761 * 5 4 3 37 37 H 0.96998 * 120.00561 * 359.97438 * 7 6 5 38 38 H 1.09000 * 109.47543 * 59.99570 * 10 8 7 39 39 H 1.09008 * 109.47338 * 300.00084 * 10 8 7 40 40 H 1.09000 * 109.46884 * 60.00335 * 11 10 8 41 41 H 1.09000 * 109.46955 * 299.99651 * 11 10 8 42 42 H 1.08998 * 109.47393 * 89.99256 * 14 13 12 43 43 H 1.09001 * 109.46747 * 209.99996 * 14 13 12 44 44 H 1.08998 * 109.46776 * 329.99757 * 14 13 12 45 45 H 1.09001 * 109.47188 * 29.97306 * 17 16 15 46 46 H 1.08997 * 109.47530 * 149.97532 * 17 16 15 47 47 H 0.96999 * 119.99548 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.47170 * 270.02464 * 27 26 16 49 49 H 1.09004 * 109.47112 * 30.02444 * 27 26 16 50 50 H 1.09003 * 109.46820 * 150.02019 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9383 0.0012 6 8 3.3977 3.5450 1.2222 7 7 3.7155 4.9211 1.3238 8 6 3.3681 5.6133 2.4269 9 8 2.7828 5.0577 3.3322 10 6 3.7059 7.0780 2.5348 11 6 3.2036 7.6199 3.8746 12 6 3.5419 9.0845 3.9827 13 6 4.7143 9.6203 4.5254 14 6 5.8610 8.8320 5.1041 15 7 4.6456 10.9241 4.4398 16 7 3.4210 11.2599 3.8483 17 6 2.9403 12.6159 3.5722 18 6 2.1676 13.1268 4.7609 19 1 2.0464 12.5034 5.6345 20 6 1.6154 14.3899 4.7332 21 7 0.9407 14.8355 5.7705 22 14 1.8257 15.4682 3.2225 23 1 0.7024 15.2267 2.2817 24 1 1.8315 16.8961 3.6304 25 1 3.1104 15.1391 2.5543 26 6 2.7624 10.1136 3.5773 27 6 1.4024 10.0001 2.9383 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8340 0.9765 -0.8891 34 1 3.8332 0.9766 0.8909 35 1 3.3500 3.4416 -0.8407 36 1 4.9083 3.0254 -0.0879 37 1 4.1840 5.3655 0.6000 38 1 3.2272 7.6223 1.7207 39 1 4.7864 7.2073 2.4722 40 1 3.6820 7.0757 4.6889 41 1 2.1230 7.4907 3.9366 42 1 6.5815 8.6080 4.3175 43 1 6.3461 9.4168 5.8856 44 1 5.4845 7.9009 5.5278 45 1 3.7904 13.2713 3.3827 46 1 2.2914 12.6002 2.6965 47 1 0.5520 15.7239 5.7508 48 1 0.6354 10.0059 3.7127 49 1 1.2457 10.8431 2.2653 50 1 1.3425 9.0691 2.3744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184795153.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:57 Heat of formation + Delta-G solvation = -20.799947 kcal Electronic energy + Delta-G solvation = -28661.550328 eV Core-core repulsion = 24499.571683 eV Total energy + Delta-G solvation = -4161.978644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.71226 -39.58489 -38.68278 -37.21237 -34.46472 -33.44759 -32.99518 -32.49642 -31.71925 -30.39734 -29.37008 -29.07225 -26.75990 -26.10019 -23.81781 -23.23802 -23.20077 -21.95475 -20.57961 -18.91250 -18.71050 -18.53158 -17.41375 -17.13568 -17.05470 -16.45334 -15.91860 -15.58059 -15.13636 -14.99216 -14.80779 -14.47676 -14.04135 -13.79414 -13.62293 -13.28696 -13.20429 -12.95051 -12.89461 -12.78927 -12.56691 -12.38928 -12.25365 -12.12849 -11.97798 -11.91353 -11.79903 -11.65964 -11.52766 -11.35256 -11.26971 -11.01537 -10.79388 -10.70663 -10.21867 -10.10187 -9.96999 -9.69889 -9.66893 -9.07450 -8.79288 -8.24859 -7.54024 -6.26923 -4.30138 1.65698 2.59886 2.67898 3.12644 3.14146 3.20693 3.21532 3.30181 3.47954 4.11185 4.20431 4.36057 4.57279 4.58499 4.62696 4.72032 4.86014 4.89086 4.93558 4.99732 5.11945 5.14399 5.17032 5.26336 5.30904 5.32788 5.50533 5.57465 5.65220 5.74202 5.76948 5.90438 5.91573 5.94258 5.99789 6.20785 6.29058 6.34780 6.42452 6.50231 6.58921 6.70902 6.78426 6.92425 7.11502 7.28097 7.41204 7.84386 8.18278 8.30464 8.58153 8.78632 9.28112 10.85620 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.001814 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.272155 B =15433.460801 C =16206.636291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.382 6.382 4 C 0.070 3.930 5 C 0.034 3.966 6 O -0.139 6.139 7 N -0.606 5.606 8 C 0.523 3.477 9 O -0.518 6.518 10 C -0.120 4.120 11 C -0.012 4.012 12 C -0.267 4.267 13 C 0.055 3.945 14 C -0.066 4.066 15 N -0.294 5.294 16 N -0.324 5.324 17 C 0.230 3.770 18 C -0.541 4.541 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.886 5.886 22 Si 0.873 3.127 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.264 1.264 26 C 0.098 3.902 27 C -0.088 4.088 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.405 0.595 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.043 0.957 47 H 0.269 0.731 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.366 -26.436 -16.292 31.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.301 6.301 4 C -0.008 4.008 5 C -0.044 4.044 6 O -0.143 6.143 7 N -0.309 5.309 8 C 0.311 3.689 9 O -0.391 6.391 10 C -0.160 4.160 11 C -0.051 4.051 12 C -0.279 4.279 13 C -0.109 4.109 14 C -0.124 4.124 15 N -0.117 5.117 16 N -0.103 5.103 17 C 0.111 3.889 18 C -0.579 4.579 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.522 5.522 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.188 1.188 26 C -0.033 4.033 27 C -0.147 4.147 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.245 0.755 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.100 0.900 49 H 0.088 0.912 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.142 -25.328 -15.173 30.157 hybrid contribution 0.106 -0.053 -1.532 1.536 sum 6.247 -25.380 -16.704 31.020 Atomic orbital electron populations 1.21749 0.93488 1.02293 1.03468 1.22485 0.95959 0.83441 1.00014 1.87995 1.20040 1.26684 1.95418 1.22408 0.82785 0.94052 1.01544 1.23006 0.99468 0.93370 0.88540 1.90674 1.80043 1.06514 1.37091 1.47853 1.62446 0.98858 1.21771 1.21292 0.78581 0.88723 0.80266 1.90736 1.39939 1.70299 1.38106 1.21732 1.03885 0.88221 1.02180 1.19429 1.01379 0.90140 0.94143 1.19311 0.97564 0.94550 1.16448 1.21980 0.96618 0.91601 1.00740 1.20051 0.94048 0.98246 1.00104 1.77289 1.01944 1.13795 1.18684 1.48786 1.11756 1.06673 1.43118 1.19964 0.95611 0.75468 0.97865 1.21165 1.33751 1.01606 1.01391 0.90137 1.24812 0.94273 0.97143 0.96296 1.69874 1.34236 1.18611 1.29524 0.86904 0.79305 0.80677 0.83255 1.19653 1.20467 1.18845 1.20788 0.95713 0.86636 1.00152 1.20388 0.91403 1.02344 1.00522 0.91511 0.91840 0.91030 0.93443 0.93199 0.90961 0.91953 0.91187 0.90592 0.75542 0.88572 0.88472 0.90832 0.90951 0.91514 0.91432 0.91029 0.93286 0.93948 0.92112 0.90007 0.91166 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.38 6.66 37.16 0.25 0.63 16 3 O -0.38 -3.61 10.31 -40.08 -0.41 -4.02 16 4 C 0.07 0.46 6.32 37.16 0.23 0.69 16 5 C 0.03 0.23 6.61 37.16 0.25 0.47 16 6 O -0.14 -1.62 11.07 -34.83 -0.39 -2.01 16 7 N -0.61 -6.00 6.39 31.22 0.20 -5.80 16 8 C 0.52 6.56 7.97 -10.98 -0.09 6.48 16 9 O -0.52 -8.97 16.39 -12.63 -0.21 -9.18 16 10 C -0.12 -1.27 5.68 -27.89 -0.16 -1.43 16 11 C -0.01 -0.17 4.41 -27.88 -0.12 -0.29 16 12 C -0.27 -4.59 5.35 -105.05 -0.56 -5.15 16 13 C 0.06 1.02 7.22 -82.41 -0.59 0.42 16 14 C -0.07 -0.90 10.26 36.01 0.37 -0.53 16 15 N -0.29 -6.54 12.58 33.67 0.42 -6.12 16 16 N -0.32 -7.29 3.60 -58.32 -0.21 -7.50 16 17 C 0.23 5.49 5.07 -5.20 -0.03 5.46 16 18 C -0.54 -15.17 9.94 -34.44 -0.34 -15.52 16 19 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 21 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 22 Si 0.87 20.10 27.47 -169.99 -4.67 15.43 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 26 C 0.10 1.88 6.93 -82.26 -0.57 1.31 16 27 C -0.09 -1.39 9.72 36.00 0.35 -1.04 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.41 2.33 8.54 -40.82 -0.35 1.98 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.07 1.04 7.20 -51.93 -0.37 0.66 16 41 H 0.07 1.06 7.73 -51.93 -0.40 0.66 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.86 7.25 -51.93 -0.38 0.48 16 45 H 0.05 1.19 7.20 -51.93 -0.37 0.81 16 46 H 0.04 0.93 6.48 -51.93 -0.34 0.59 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 49 H 0.07 1.08 7.08 -51.93 -0.37 0.71 16 50 H 0.07 0.91 7.77 -51.93 -0.40 0.51 16 LS Contribution 420.02 15.07 6.33 6.33 Total: -1.00 -37.49 420.02 -7.38 -44.87 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.49 Total: 0.55 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -0.73 Total: -6.95 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 1.19 Total: -45.02 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -1.01 Total: -15.21 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -37.49 -7.38 -44.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184795153.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.073 kcal (2) G-P(sol) polarization free energy of solvation -37.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds