Wall clock time and date at job start Sat Apr 11 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47234 * 2 1 4 4 C 1.42898 * 114.00123 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47529 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.47140 * 64.99685 * 5 4 3 7 7 N 1.41595 * 114.00007 * 180.02562 * 6 5 4 8 8 C 1.34784 * 119.99861 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00093 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99865 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.47110 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47116 * 179.97438 * 11 10 8 13 13 C 1.39862 * 126.04094 * 269.68901 * 12 11 10 14 14 C 1.50702 * 125.90180 * 0.02562 * 13 12 11 15 15 N 1.30842 * 108.19992 * 179.81747 * 13 12 11 16 16 N 1.40084 * 108.20663 * 0.44091 * 15 13 12 17 17 C 1.46495 * 126.04013 * 179.73793 * 16 15 13 18 18 C 1.50699 * 109.47131 * 269.98016 * 17 16 15 19 19 H 1.08002 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00208 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00055 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99907 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46872 * 89.99940 * 22 20 18 24 24 H 1.48495 * 109.47211 * 210.00060 * 22 20 18 25 25 H 1.48505 * 109.47239 * 330.00326 * 22 20 18 26 26 C 1.34950 * 107.92381 * 359.71898 * 16 15 13 27 27 C 1.50694 * 126.12576 * 179.97438 * 26 16 15 28 28 H 1.09004 * 109.47253 * 300.00029 * 1 2 3 29 29 H 1.09007 * 109.46799 * 59.99469 * 1 2 3 30 30 H 1.09000 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46773 * 240.00198 * 2 1 3 32 32 H 1.09003 * 109.46978 * 120.00040 * 2 1 3 33 33 H 1.08997 * 109.47217 * 60.00187 * 4 3 2 34 34 H 1.09006 * 109.46698 * 300.00132 * 4 3 2 35 35 H 1.09002 * 109.46850 * 305.00236 * 5 4 3 36 36 H 1.08992 * 109.47628 * 184.99761 * 5 4 3 37 37 H 0.96998 * 120.00561 * 359.97438 * 7 6 5 38 38 H 1.09000 * 109.47543 * 59.99570 * 10 8 7 39 39 H 1.09008 * 109.47338 * 300.00084 * 10 8 7 40 40 H 1.09000 * 109.46884 * 60.00335 * 11 10 8 41 41 H 1.09000 * 109.46955 * 299.99651 * 11 10 8 42 42 H 1.08998 * 109.47393 * 89.99256 * 14 13 12 43 43 H 1.09001 * 109.46747 * 209.99996 * 14 13 12 44 44 H 1.08998 * 109.46776 * 329.99757 * 14 13 12 45 45 H 1.09001 * 109.47188 * 29.97306 * 17 16 15 46 46 H 1.08997 * 109.47530 * 149.97532 * 17 16 15 47 47 H 0.96999 * 119.99548 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.47170 * 270.02464 * 27 26 16 49 49 H 1.09004 * 109.47112 * 30.02444 * 27 26 16 50 50 H 1.09003 * 109.46820 * 150.02019 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9383 0.0012 6 8 3.3977 3.5450 1.2222 7 7 3.7155 4.9211 1.3238 8 6 3.3681 5.6133 2.4269 9 8 2.7828 5.0577 3.3322 10 6 3.7059 7.0780 2.5348 11 6 3.2036 7.6199 3.8746 12 6 3.5419 9.0845 3.9827 13 6 4.7143 9.6203 4.5254 14 6 5.8610 8.8320 5.1041 15 7 4.6456 10.9241 4.4398 16 7 3.4210 11.2599 3.8483 17 6 2.9403 12.6159 3.5722 18 6 2.1676 13.1268 4.7609 19 1 2.0464 12.5034 5.6345 20 6 1.6154 14.3899 4.7332 21 7 0.9407 14.8355 5.7705 22 14 1.8257 15.4682 3.2225 23 1 0.7024 15.2267 2.2817 24 1 1.8315 16.8961 3.6304 25 1 3.1104 15.1391 2.5543 26 6 2.7624 10.1136 3.5773 27 6 1.4024 10.0001 2.9383 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8340 0.9765 -0.8891 34 1 3.8332 0.9766 0.8909 35 1 3.3500 3.4416 -0.8407 36 1 4.9083 3.0254 -0.0879 37 1 4.1840 5.3655 0.6000 38 1 3.2272 7.6223 1.7207 39 1 4.7864 7.2073 2.4722 40 1 3.6820 7.0757 4.6889 41 1 2.1230 7.4907 3.9366 42 1 6.5815 8.6080 4.3175 43 1 6.3461 9.4168 5.8856 44 1 5.4845 7.9009 5.5278 45 1 3.7904 13.2713 3.3827 46 1 2.2914 12.6002 2.6965 47 1 0.5520 15.7239 5.7508 48 1 0.6354 10.0059 3.7127 49 1 1.2457 10.8431 2.2653 50 1 1.3425 9.0691 2.3744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184795153.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:56 Heat of formation + Delta-G solvation = -47.143541 kcal Electronic energy + Delta-G solvation = -28662.692672 eV Core-core repulsion = 24499.571683 eV Total energy + Delta-G solvation = -4163.120988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17406 -40.52881 -39.28789 -37.96599 -36.07605 -34.85268 -34.25109 -33.77785 -32.43328 -31.74797 -30.69296 -29.78665 -28.05325 -27.69984 -25.16219 -23.76217 -23.70564 -23.62474 -21.51216 -20.31585 -20.14877 -19.28052 -19.22789 -18.06346 -17.92358 -17.24385 -16.99381 -16.70307 -16.37244 -15.96791 -15.74258 -15.66111 -15.27837 -14.86216 -14.72510 -14.66059 -14.39135 -14.11191 -13.90552 -13.84849 -13.73342 -13.42781 -13.40278 -13.31046 -13.21686 -12.85301 -12.77819 -12.68541 -12.52832 -12.47477 -12.33225 -12.19710 -11.95400 -11.86942 -11.86529 -11.81251 -11.17197 -10.97468 -10.90359 -10.60499 -9.89520 -9.82118 -9.00957 -8.41781 -6.53005 0.89661 1.17104 1.32676 1.35709 1.46054 1.66825 1.92064 1.93869 2.25447 2.68763 2.90473 3.46495 3.73305 3.86520 3.92772 3.96018 4.12331 4.16859 4.21721 4.23114 4.27682 4.34345 4.42048 4.45530 4.47836 4.48911 4.59774 4.65067 4.65562 4.71247 4.78692 4.85256 4.86410 4.89846 4.92393 5.01320 5.06136 5.14862 5.23699 5.24763 5.32906 5.42827 5.52101 5.81036 5.93269 6.07649 6.22683 6.38374 6.42521 6.52043 7.07798 7.11672 7.34834 8.75127 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.001814 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.272155 B =15433.460801 C =16206.636291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 O -0.416 6.416 4 C 0.064 3.936 5 C 0.028 3.972 6 O -0.177 6.177 7 N -0.589 5.589 8 C 0.525 3.475 9 O -0.575 6.575 10 C -0.107 4.107 11 C -0.007 4.007 12 C -0.256 4.256 13 C 0.057 3.943 14 C -0.065 4.065 15 N -0.346 5.346 16 N -0.355 5.355 17 C 0.241 3.759 18 C -0.552 4.552 19 H 0.020 0.980 20 C 0.019 3.981 21 N -0.938 5.938 22 Si 0.953 3.047 23 H -0.249 1.249 24 H -0.278 1.278 25 H -0.245 1.245 26 C 0.082 3.918 27 C -0.087 4.087 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.426 0.574 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.045 0.955 46 H 0.069 0.931 47 H 0.273 0.727 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.844 -27.806 -19.892 35.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.336 6.336 4 C -0.013 4.013 5 C -0.049 4.049 6 O -0.181 6.181 7 N -0.293 5.293 8 C 0.315 3.685 9 O -0.453 6.453 10 C -0.147 4.147 11 C -0.046 4.046 12 C -0.268 4.268 13 C -0.108 4.108 14 C -0.123 4.123 15 N -0.170 5.170 16 N -0.134 5.134 17 C 0.121 3.879 18 C -0.590 4.590 19 H 0.038 0.962 20 C -0.180 4.180 21 N -0.577 5.577 22 Si 0.774 3.226 23 H -0.173 1.173 24 H -0.203 1.203 25 H -0.168 1.168 26 C -0.047 4.047 27 C -0.145 4.145 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.269 0.731 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.092 0.908 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.653 -26.737 -18.829 33.585 hybrid contribution -0.321 0.186 -0.330 0.496 sum 7.333 -26.550 -19.159 33.552 Atomic orbital electron populations 1.21785 0.93656 1.03300 1.02326 1.22640 0.95965 0.82719 1.01109 1.87952 1.21783 1.28223 1.95666 1.22649 0.81642 0.94177 1.02858 1.23328 1.01372 0.93167 0.86985 1.90660 1.80818 1.06966 1.39688 1.47616 1.61320 0.98678 1.21667 1.21528 0.77714 0.89280 0.80020 1.90722 1.42731 1.71540 1.40279 1.21615 1.05573 0.86931 1.00607 1.19385 1.00972 0.87904 0.96388 1.19648 0.96583 0.95744 1.14824 1.22795 0.98021 0.90829 0.99119 1.20238 0.93136 0.98080 1.00850 1.77218 1.02896 1.16063 1.20797 1.48665 1.12754 1.06750 1.45268 1.19660 0.95028 0.76696 0.96516 1.21278 1.34916 1.01527 1.01254 0.96176 1.25884 0.93306 0.98606 1.00240 1.70046 1.35668 1.19458 1.32494 0.85646 0.80726 0.77693 0.78558 1.17340 1.20349 1.16800 1.21470 0.96895 0.86139 1.00235 1.20502 0.89209 1.04466 1.00334 0.93403 0.92157 0.88995 0.91304 0.93030 0.87734 0.92377 0.90430 0.87533 0.73060 0.86402 0.85807 0.91005 0.91894 0.88434 0.91893 0.89182 0.93699 0.91361 0.91758 0.91295 0.90791 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.05 0.63 6.66 71.98 0.48 1.11 16 3 O -0.42 -7.47 10.31 -144.35 -1.49 -8.96 16 4 C 0.06 0.72 6.32 71.98 0.45 1.17 16 5 C 0.03 0.31 6.61 71.98 0.48 0.79 16 6 O -0.18 -3.84 11.07 -16.44 -0.18 -4.02 16 7 N -0.59 -10.19 6.39 -173.53 -1.11 -11.29 16 8 C 0.53 12.12 7.97 87.65 0.70 12.82 16 9 O -0.58 -19.67 16.39 14.36 0.24 -19.44 16 10 C -0.11 -1.93 5.68 29.85 0.17 -1.76 16 11 C -0.01 -0.19 4.41 29.85 0.13 -0.06 16 12 C -0.26 -8.52 5.35 -20.14 -0.11 -8.62 16 13 C 0.06 2.06 7.22 43.10 0.31 2.37 16 14 C -0.06 -1.63 10.26 71.24 0.73 -0.90 16 15 N -0.35 -15.60 12.58 -47.38 -0.60 -16.20 16 16 N -0.35 -16.11 3.60 -338.42 -1.22 -17.33 16 17 C 0.24 11.57 5.07 85.63 0.43 12.00 16 18 C -0.55 -32.23 9.94 25.60 0.25 -31.98 16 19 H 0.02 1.37 8.06 -2.91 -0.02 1.34 16 20 C 0.02 1.09 5.47 84.66 0.46 1.56 16 21 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 22 Si 0.95 41.22 27.47 68.60 1.88 43.11 16 23 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 26 C 0.08 3.10 6.93 41.40 0.29 3.38 16 27 C -0.09 -2.65 9.72 71.23 0.69 -1.95 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.43 3.40 8.54 -92.71 -0.79 2.60 16 38 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.07 1.92 7.20 -2.39 -0.02 1.90 16 41 H 0.06 1.78 7.73 -2.39 -0.02 1.76 16 42 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.09 1.94 7.25 -2.39 -0.02 1.93 16 45 H 0.05 2.16 7.20 -2.39 -0.02 2.14 16 46 H 0.07 2.88 6.48 -2.39 -0.02 2.87 16 47 H 0.27 15.53 8.31 -92.71 -0.77 14.75 16 48 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.07 2.17 7.08 -2.39 -0.02 2.15 16 50 H 0.11 2.46 7.77 -2.39 -0.02 2.44 16 Total: -1.00 -88.25 420.02 4.13 -84.12 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.09 Total: 18.84 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 6.22 Total: -11.18 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -2.62 Total: -102.48 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.43 Total: -32.41 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.88 Total: 43.11 kcal Total: -88.25 4.13 -84.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184795153.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.976 kcal (2) G-P(sol) polarization free energy of solvation -88.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds